data_A1JAM # _chem_comp.id A1JAM _chem_comp.name "2-[3-[[6-[3-(methylamino)propylsulfanylmethyl]pyridin-2-yl]methylsulfanylmethyl]phenyl]ethanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H26 N2 O2 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-04-09 _chem_comp.pdbx_modified_date 2026-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 390.563 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JAM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9QBS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JAM C11 C1 C 0 1 Y N N N N N -2.715 47.976 6.878 -5.123 -3.087 -0.410 C11 A1JAM 1 A1JAM C12 C2 C 0 1 Y N N N N N -3.493 48.798 7.679 -4.033 -2.633 0.309 C12 A1JAM 2 A1JAM C13 C3 C 0 1 Y N N N Y N -3.038 49.208 8.923 -4.086 -1.407 0.946 C13 A1JAM 3 A1JAM C14 C4 C 0 1 N N N N Y N -3.874 50.096 9.812 -2.897 -0.913 1.729 C14 A1JAM 4 A1JAM C16 C5 C 0 1 Y N N N Y N -1.788 48.775 9.346 -5.230 -0.635 0.864 C16 A1JAM 5 A1JAM C18 C6 C 0 1 N N N N Y N -3.722 52.588 8.613 -0.461 0.544 1.741 C18 A1JAM 6 A1JAM C19 C7 C 0 1 Y N N N Y N -5.158 53.030 8.642 0.544 1.361 0.970 C19 A1JAM 7 A1JAM C21 C8 C 0 1 Y N N N Y N -7.352 52.523 8.120 2.457 1.432 -0.311 C21 A1JAM 8 A1JAM C22 C9 C 0 1 Y N N N N N -7.794 53.731 8.643 2.374 2.807 -0.430 C22 A1JAM 9 A1JAM C23 C10 C 0 1 Y N N N N N -6.863 54.603 9.180 1.328 3.476 0.187 C23 A1JAM 10 A1JAM C24 C11 C 0 1 Y N N N N N -5.524 54.255 9.183 0.398 2.733 0.899 C24 A1JAM 11 A1JAM C25 C12 C 0 1 N N N N Y N -8.306 51.532 7.527 3.590 0.694 -0.977 C25 A1JAM 12 A1JAM CA C13 C 0 1 N N N N Y N 0.374 47.541 9.044 -7.567 -0.247 0.058 CA A1JAM 13 A1JAM C C14 C 0 1 N N N N Y Y 0.243 46.399 10.043 -7.475 0.662 -1.141 C A1JAM 14 A1JAM O O1 O 0 1 N N N N Y Y 0.438 45.244 9.642 -6.498 0.630 -1.850 O A1JAM 15 A1JAM CB C15 C 0 1 Y N N N Y N -0.994 47.953 8.557 -6.321 -1.089 0.146 CB A1JAM 16 A1JAM C10 C16 C 0 1 Y N N N N N -1.471 47.556 7.318 -6.267 -2.315 -0.491 C10 A1JAM 17 A1JAM CN C17 C 0 1 N N N N N N -11.356 50.158 12.773 10.790 -2.177 -0.717 CN A1JAM 18 A1JAM C3 C18 C 0 1 N N N N Y N -10.842 49.919 10.389 8.546 -1.272 -0.772 C3 A1JAM 19 A1JAM C4 C19 C 0 1 N N N N Y N -9.721 50.938 10.565 7.499 -0.509 0.042 C4 A1JAM 20 A1JAM C5 C20 C 0 1 N N N N Y N -8.347 50.465 10.115 6.233 -0.326 -0.798 C5 A1JAM 21 A1JAM N N N 0 1 N N N Y Y N -11.104 49.251 11.627 9.761 -1.447 0.035 N A1JAM 22 A1JAM N20 N2 N 0 1 Y N N N Y N -6.052 52.173 8.118 1.554 0.758 0.374 N20 A1JAM 23 A1JAM S15 S1 S 0 1 N N N N Y N -3.205 51.764 10.151 -1.809 0.043 0.637 S15 A1JAM 24 A1JAM S6 S2 S 0 1 N N N N Y N -8.261 49.929 8.385 4.992 0.578 0.168 S6 A1JAM 25 A1JAM H41 H1 H 0 1 N N N N N N -3.079 47.663 5.911 -5.080 -4.042 -0.911 H41 A1JAM 26 A1JAM H42 H2 H 0 1 N N N N N N -4.463 49.122 7.331 -3.139 -3.236 0.372 H42 A1JAM 27 A1JAM H43 H3 H 0 1 N N N N Y N -4.857 50.220 9.333 -3.240 -0.279 2.547 H43 A1JAM 28 A1JAM H44 H4 H 0 1 N N N N Y N -3.999 49.582 10.777 -2.349 -1.764 2.133 H44 A1JAM 29 A1JAM H45 H5 H 0 1 N N N N Y N -1.424 49.086 10.314 -5.272 0.322 1.362 H45 A1JAM 30 A1JAM H47 H6 H 0 1 N N N N Y N -3.587 51.887 7.776 0.026 -0.343 2.146 H47 A1JAM 31 A1JAM H46 H7 H 0 1 N N N N Y N -3.086 53.472 8.457 -0.864 1.142 2.559 H46 A1JAM 32 A1JAM H48 H8 H 0 1 N N N N N N -8.844 53.985 8.631 3.114 3.353 -0.996 H48 A1JAM 33 A1JAM H49 H9 H 0 1 N N N N N N -7.180 55.549 9.594 1.237 4.549 0.111 H49 A1JAM 34 A1JAM H50 H10 H 0 1 N N N N N N -4.781 54.921 9.597 -0.430 3.222 1.392 H50 A1JAM 35 A1JAM H52 H11 H 0 1 N N N N Y N -9.326 51.940 7.593 3.260 -0.308 -1.251 H52 A1JAM 36 A1JAM H51 H12 H 0 1 N N N N Y N -8.042 51.375 6.471 3.897 1.233 -1.874 H51 A1JAM 37 A1JAM HA H13 H 0 1 N N N N Y N 0.982 47.210 8.189 -7.666 0.353 0.962 HA A1JAM 38 A1JAM H39 H14 H 0 1 N N N N Y N 0.862 48.398 9.531 -8.437 -0.896 -0.045 H39 A1JAM 39 A1JAM H40 H16 H 0 1 N N N N N N -0.869 46.915 6.691 -7.119 -2.669 -1.052 H40 A1JAM 40 A1JAM HN1 H17 H 0 1 N N N N N N -11.547 49.562 13.678 10.410 -3.160 -0.994 HN1 A1JAM 41 A1JAM HN2 H18 H 0 1 N N N N N N -10.476 50.798 12.934 11.047 -1.620 -1.617 HN2 A1JAM 42 A1JAM HN3 H19 H 0 1 N N N N N N -12.232 50.787 12.557 11.679 -2.294 -0.096 HN3 A1JAM 43 A1JAM H32 H20 H 0 1 N N N N Y N -11.754 50.436 10.056 8.149 -2.248 -1.050 H32 A1JAM 44 A1JAM H33 H21 H 0 1 N N N N Y N -10.544 49.178 9.633 8.786 -0.707 -1.673 H33 A1JAM 45 A1JAM H34 H22 H 0 1 N N N N Y N -9.660 51.198 11.632 7.258 -1.073 0.943 H34 A1JAM 46 A1JAM H35 H23 H 0 1 N N N N Y N -9.981 51.835 9.984 7.895 0.468 0.320 H35 A1JAM 47 A1JAM H36 H24 H 0 1 N N N N Y N -8.050 49.618 10.751 6.474 0.238 -1.699 H36 A1JAM 48 A1JAM H37 H25 H 0 1 N N N N Y N -7.637 51.294 10.253 5.837 -1.303 -1.076 H37 A1JAM 49 A1JAM H2 H26 H 0 1 N Y N Y Y N -11.909 48.671 11.505 10.111 -0.559 0.359 H2 A1JAM 50 A1JAM OXT O2 O 0 1 N Y N N Y Y -0.108 46.692 11.301 -8.480 1.508 -1.421 OXT A1JAM 51 A1JAM HXT H27 H 0 1 N Y N N Y Y -0.177 45.890 11.806 -8.375 2.071 -2.199 HXT A1JAM 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JAM C11 C10 DOUB Y N 1 A1JAM C11 C12 SING Y N 2 A1JAM C10 CB SING Y N 3 A1JAM C25 C21 SING N N 4 A1JAM C25 S6 SING N N 5 A1JAM C12 C13 DOUB Y N 6 A1JAM N20 C21 DOUB Y N 7 A1JAM N20 C19 SING Y N 8 A1JAM C21 C22 SING Y N 9 A1JAM S6 C5 SING N N 10 A1JAM CB CA SING N N 11 A1JAM CB C16 DOUB Y N 12 A1JAM C18 C19 SING N N 13 A1JAM C18 S15 SING N N 14 A1JAM C19 C24 DOUB Y N 15 A1JAM C22 C23 DOUB Y N 16 A1JAM C13 C16 SING Y N 17 A1JAM C13 C14 SING N N 18 A1JAM CA C SING N N 19 A1JAM C23 C24 SING Y N 20 A1JAM O C DOUB N N 21 A1JAM C14 S15 SING N N 22 A1JAM C5 C4 SING N N 23 A1JAM C3 C4 SING N N 24 A1JAM C3 N SING N N 25 A1JAM N CN SING N N 26 A1JAM C11 H41 SING N N 27 A1JAM C12 H42 SING N N 28 A1JAM C14 H43 SING N N 29 A1JAM C14 H44 SING N N 30 A1JAM C16 H45 SING N N 31 A1JAM C18 H47 SING N N 32 A1JAM C18 H46 SING N N 33 A1JAM C22 H48 SING N N 34 A1JAM C23 H49 SING N N 35 A1JAM C24 H50 SING N N 36 A1JAM C25 H52 SING N N 37 A1JAM C25 H51 SING N N 38 A1JAM CA HA SING N N 39 A1JAM CA H39 SING N N 40 A1JAM C10 H40 SING N N 41 A1JAM CN HN1 SING N N 42 A1JAM CN HN2 SING N N 43 A1JAM CN HN3 SING N N 44 A1JAM C3 H32 SING N N 45 A1JAM C3 H33 SING N N 46 A1JAM C4 H34 SING N N 47 A1JAM C4 H35 SING N N 48 A1JAM C5 H36 SING N N 49 A1JAM C5 H37 SING N N 50 A1JAM N H2 SING N N 51 A1JAM C OXT SING N N 52 A1JAM OXT HXT SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JAM InChI InChI 1.06 "InChI=1S/C20H26N2O2S2/c1-21-9-4-10-25-14-18-7-3-8-19(22-18)15-26-13-17-6-2-5-16(11-17)12-20(23)24/h2-3,5-8,11,21H,4,9-10,12-15H2,1H3,(H,23,24)" A1JAM InChIKey InChI 1.06 RGFIPOHCCVLJIG-UHFFFAOYSA-N A1JAM SMILES_CANONICAL CACTVS 3.385 "CNCCCSCc1cccc(CSCc2cccc(CC(O)=O)c2)n1" A1JAM SMILES CACTVS 3.385 "CNCCCSCc1cccc(CSCc2cccc(CC(O)=O)c2)n1" A1JAM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNCCCSCc1cccc(n1)CSCc2cccc(c2)CC(=O)O" A1JAM SMILES "OpenEye OEToolkits" 2.0.7 "CNCCCSCc1cccc(n1)CSCc2cccc(c2)CC(=O)O" # _pdbx_chem_comp_identifier.comp_id A1JAM _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[3-[[6-[3-(methylamino)propylsulfanylmethyl]pyridin-2-yl]methylsulfanylmethyl]phenyl]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JAM "Create component" 2025-04-09 PDBE A1JAM "Modify atom id" 2026-03-12 PDBE A1JAM "Initial release" 2026-03-18 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1JAM _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #