data_A1JAP # _chem_comp.id A1JAP _chem_comp.name 2-Hydroxy-archaetidylinositol _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C46 H94 N O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2~{S})-2-azanyl-3-[oxidanyl-[(2~{S})-3-[(3~{R},7~{R},11~{R})-3,7,11,15-tetramethylhexadecoxy]-2-[(3~{R},7~{R},11~{R})-3,7,11,15-tetramethyl-3-oxidanyl-hexadecoxy]propoxy]phosphoryl]oxy-propanoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-04-09 _chem_comp.pdbx_modified_date 2025-12-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 836.214 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JAP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9QTS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JAP C3 C1 C 0 1 N N N N N N 215.520 203.478 227.986 -15.373 6.230 -0.617 C3 A1JAP 1 A1JAP C4 C2 C 0 1 N N N N N N 216.625 202.476 227.639 -14.729 5.185 0.296 C4 A1JAP 2 A1JAP C5 C3 C 0 1 N N N N N N 216.496 201.855 226.245 -13.519 4.569 -0.410 C5 A1JAP 3 A1JAP C2 C4 C 0 1 N N N N N N 214.661 203.109 229.170 -16.583 6.847 0.088 C2 A1JAP 4 A1JAP C1 C5 C 0 1 N N N N N N 213.870 204.303 229.675 -16.114 7.621 1.322 C1 A1JAP 5 A1JAP C10 C6 C 0 1 N N N N N N 221.188 202.623 225.786 -9.605 1.518 0.165 C10 A1JAP 6 A1JAP C11 C7 C 0 1 N N R N N N 221.402 204.010 225.210 -8.895 0.567 1.130 C11 A1JAP 7 A1JAP C12 C8 C 0 1 N N N N N N 221.359 205.087 226.289 -9.768 -0.668 1.364 C12 A1JAP 8 A1JAP C13 C9 C 0 1 N N N N N N 222.685 204.073 224.401 -7.555 0.138 0.530 C13 A1JAP 9 A1JAP C14 C10 C 0 1 N N N N N N 222.964 205.437 223.764 -6.790 -0.712 1.546 C14 A1JAP 10 A1JAP C15 C11 C 0 1 N N N N N N 224.290 205.504 223.003 -5.449 -1.142 0.946 C15 A1JAP 11 A1JAP C16 C12 C 0 1 N N R N N N 224.400 206.690 222.061 -4.684 -1.992 1.963 C16 A1JAP 12 A1JAP C17 C13 C 0 1 N N N N N N 224.577 207.996 222.827 -5.449 -3.293 2.217 C17 A1JAP 13 A1JAP C18 C14 C 0 1 N N N N N N 225.493 206.521 221.021 -3.294 -2.317 1.412 C18 A1JAP 14 A1JAP C19 C15 C 0 1 N N N N N N 225.285 205.390 220.042 -2.485 -3.060 2.477 C19 A1JAP 15 A1JAP C20 C16 C 0 1 N N N N N N 223.517 204.471 218.712 -0.346 -4.061 2.884 C20 A1JAP 16 A1JAP C21 C17 C 0 1 N N S N N N 222.101 204.796 218.287 1.011 -4.332 2.231 C21 A1JAP 17 A1JAP C22 C18 C 0 1 N N N N N N 221.692 204.089 217.017 0.802 -5.076 0.910 C22 A1JAP 18 A1JAP C23 C19 C 0 1 N N N N N N 220.733 204.747 212.949 -1.902 -3.771 -3.431 C23 A1JAP 19 A1JAP C24 C20 C 0 1 N N S N N N 221.329 203.578 212.191 -2.727 -2.527 -3.770 C24 A1JAP 20 A1JAP C25 C21 C 0 1 N N N N N N 220.286 202.486 211.915 -3.113 -2.562 -5.226 C25 A1JAP 21 A1JAP C26 C22 C 0 1 N N N N N N 221.136 205.108 220.498 3.100 -3.175 2.024 C26 A1JAP 22 A1JAP C27 C23 C 0 1 N N N N N N 220.189 204.435 221.462 3.701 -1.797 1.741 C27 A1JAP 23 A1JAP C28 C24 C 0 1 N N R N N N 218.715 204.744 221.160 5.228 -1.886 1.790 C28 A1JAP 24 A1JAP C29 C25 C 0 1 N N N N N N 218.348 206.222 221.363 5.828 -0.508 1.507 C29 A1JAP 25 A1JAP C30 C26 C 0 1 N N N N N N 218.769 206.875 222.677 7.352 -0.621 1.433 C30 A1JAP 26 A1JAP C31 C27 C 0 1 N N N N N N 218.516 208.386 222.708 7.953 0.757 1.150 C31 A1JAP 27 A1JAP C32 C28 C 0 1 N N R N N N 219.744 209.238 222.422 9.477 0.644 1.076 C32 A1JAP 28 A1JAP C33 C29 C 0 1 N N N N N N 220.219 209.060 220.984 10.026 0.236 2.445 C33 A1JAP 29 A1JAP C34 C30 C 0 1 N N N N N N 220.881 209.027 223.406 10.070 1.995 0.670 C34 A1JAP 30 A1JAP C35 C31 C 0 1 N N N N N N 220.448 209.014 224.874 11.581 1.851 0.474 C35 A1JAP 31 A1JAP C36 C32 C 0 1 N N N N N N 221.583 209.288 225.864 12.173 3.201 0.069 C36 A1JAP 32 A1JAP C37 C33 C 0 1 N N R N N N 221.204 209.060 227.313 13.684 3.057 -0.127 C37 A1JAP 33 A1JAP C38 C34 C 0 1 N N N N N N 220.291 210.163 227.837 14.341 2.713 1.211 C38 A1JAP 34 A1JAP C39 C35 C 0 1 N N N N N N 222.435 208.893 228.182 14.258 4.375 -0.652 C39 A1JAP 35 A1JAP C40 C36 C 0 1 N N N N N N 222.125 208.577 229.647 15.745 4.194 -0.966 C40 A1JAP 36 A1JAP C41 C37 C 0 1 N N N N N N 223.309 207.980 230.414 16.319 5.511 -1.491 C41 A1JAP 37 A1JAP C42 C38 C 0 1 N N N N N N 222.956 207.200 231.655 17.805 5.331 -1.805 C42 A1JAP 38 A1JAP C43 C39 C 0 1 N N N N N N 224.194 206.868 232.468 18.350 6.609 -2.446 C43 A1JAP 39 A1JAP C44 C40 C 0 1 N N N N N N 222.188 205.934 231.316 18.569 5.044 -0.510 C44 A1JAP 40 A1JAP C45 C41 C 0 1 N N N N N N 217.789 203.837 221.955 5.714 -2.881 0.735 C45 A1JAP 41 A1JAP C46 C42 C 0 1 N N N N N N 213.730 201.955 228.838 -17.300 7.800 -0.870 C46 A1JAP 42 A1JAP C6 C43 C 0 1 N N R N N N 217.663 200.968 225.851 -12.874 3.523 0.503 C6 A1JAP 43 A1JAP C7 C44 C 0 1 N N N N N N 217.213 199.850 224.918 -13.850 2.365 0.720 C7 A1JAP 44 A1JAP C8 C45 C 0 1 N N N N N N 218.830 201.738 225.256 -11.594 2.997 -0.149 C8 A1JAP 45 A1JAP C9 C46 C 0 1 N N N N N N 219.767 202.360 226.296 -10.885 2.045 0.817 C9 A1JAP 46 A1JAP N1 N1 N 0 1 N N N N N N 221.914 204.047 210.909 -3.940 -2.504 -2.942 N1 A1JAP 47 A1JAP O1 O1 O 0 1 N N N N N N 224.107 205.642 219.272 -1.187 -3.364 1.963 O1 A1JAP 48 A1JAP O2 O2 O 0 1 N N N N N N 220.317 204.416 216.712 -0.091 -4.332 0.080 O2 A1JAP 49 A1JAP O3 O3 O 0 1 N N N N N N 220.998 206.468 215.423 -1.391 -6.180 -1.265 O3 A1JAP 50 A1JAP O4 O4 O 0 1 N N N N N N 220.433 204.298 214.275 -1.438 -3.682 -2.082 O4 A1JAP 51 A1JAP O5 O5 O 0 1 N N N N N N 219.140 202.660 212.383 -2.227 -2.189 -6.164 O5 A1JAP 52 A1JAP O6 O6 O 0 1 N N N N N N 220.654 201.500 211.241 -4.219 -2.925 -5.549 O6 A1JAP 53 A1JAP O7 O7 O 0 1 N N N N N N 218.575 205.603 215.346 0.667 -5.067 -2.212 O7 A1JAP 54 A1JAP O8 O8 O 0 1 N N N N N N 221.169 204.355 219.287 1.674 -3.092 1.978 O8 A1JAP 55 A1JAP O9 O9 O 0 1 N N N N N N 218.510 204.450 219.770 5.637 -2.327 3.086 O9 A1JAP 56 A1JAP P1 P1 P 0 1 N N N N N N 220.033 205.340 215.429 -0.537 -4.821 -1.388 P1 A1JAP 57 A1JAP H6 H1 H 0 1 N N N N N N 214.864 203.577 227.109 -14.647 7.012 -0.844 H6 A1JAP 58 A1JAP H5 H2 H 0 1 N N N N N N 215.995 204.447 228.200 -15.696 5.755 -1.543 H5 A1JAP 59 A1JAP H7 H3 H 0 1 N N N N N N 217.593 202.996 227.696 -14.406 5.661 1.222 H7 A1JAP 60 A1JAP H8 H4 H 0 1 N N N N N N 216.600 201.665 228.381 -15.454 4.404 0.522 H8 A1JAP 61 A1JAP H9 H5 H 0 1 N N N N N N 215.578 201.249 226.220 -13.842 4.093 -1.336 H9 A1JAP 62 A1JAP H10 H6 H 0 1 N N N N N N 216.418 202.670 225.510 -12.793 5.350 -0.636 H10 A1JAP 63 A1JAP H4 H7 H 0 1 N N N N N N 215.327 202.780 229.981 -17.267 6.056 0.394 H4 A1JAP 64 A1JAP H2 H8 H 0 1 N N N N N N 213.256 203.999 230.536 -16.976 8.060 1.824 H2 A1JAP 65 A1JAP H3 H9 H 0 1 N N N N N N 214.564 205.099 229.982 -15.603 6.942 2.004 H3 A1JAP 66 A1JAP H1 H10 H 0 1 N N N N N N 213.217 204.676 228.872 -15.429 8.412 1.016 H1 A1JAP 67 A1JAP H19 H11 H 0 1 N N N N N N 221.885 202.488 226.626 -8.946 2.355 -0.071 H19 A1JAP 68 A1JAP H20 H12 H 0 1 N N N N N N 221.413 201.886 225.001 -9.857 0.985 -0.752 H20 A1JAP 69 A1JAP H21 H13 H 0 1 N N N N N N 220.570 204.209 224.519 -8.722 1.075 2.079 H21 A1JAP 70 A1JAP H24 H14 H 0 1 N N N N N N 221.518 206.074 225.829 -9.941 -1.175 0.415 H24 A1JAP 71 A1JAP H22 H15 H 0 1 N N N N N N 220.378 205.068 226.787 -9.262 -1.345 2.051 H22 A1JAP 72 A1JAP H23 H16 H 0 1 N N N N N N 222.150 204.896 227.029 -10.723 -0.362 1.791 H23 A1JAP 73 A1JAP H25 H17 H 0 1 N N N N N N 223.525 203.826 225.067 -7.731 -0.446 -0.373 H25 A1JAP 74 A1JAP H26 H18 H 0 1 N N N N N N 222.622 203.324 223.598 -6.968 1.022 0.282 H26 A1JAP 75 A1JAP H27 H19 H 0 1 N N N N N N 222.149 205.665 223.061 -6.613 -0.128 2.450 H27 A1JAP 76 A1JAP H28 H20 H 0 1 N N N N N N 222.983 206.195 224.561 -7.376 -1.597 1.795 H28 A1JAP 77 A1JAP H29 H21 H 0 1 N N N N N N 225.107 205.567 223.736 -5.626 -1.726 0.043 H29 A1JAP 78 A1JAP H30 H22 H 0 1 N N N N N N 224.398 204.582 222.413 -4.863 -0.257 0.698 H30 A1JAP 79 A1JAP H31 H23 H 0 1 N N N N N N 223.446 206.762 221.519 -4.585 -1.440 2.897 H31 A1JAP 80 A1JAP H34 H24 H 0 1 N N N N N N 224.653 208.832 222.116 -4.904 -3.898 2.941 H34 A1JAP 81 A1JAP H32 H25 H 0 1 N N N N N N 223.711 208.154 223.487 -6.439 -3.061 2.609 H32 A1JAP 82 A1JAP H33 H26 H 0 1 N N N N N N 225.494 207.945 223.432 -5.548 -3.845 1.283 H33 A1JAP 83 A1JAP H35 H27 H 0 1 N N N N N N 225.564 207.457 220.448 -3.392 -2.944 0.526 H35 A1JAP 84 A1JAP H36 H28 H 0 1 N N N N N N 226.441 206.342 221.550 -2.783 -1.391 1.148 H36 A1JAP 85 A1JAP H37 H29 H 0 1 N N N N N N 226.154 205.320 219.372 -2.388 -2.432 3.363 H37 A1JAP 86 A1JAP H38 H30 H 0 1 N N N N N N 225.169 204.445 220.592 -2.997 -3.986 2.742 H38 A1JAP 87 A1JAP H39 H31 H 0 1 N N N N N N 224.100 204.145 217.838 -0.813 -5.008 3.157 H39 A1JAP 88 A1JAP H40 H32 H 0 1 N N N N N N 223.503 203.668 219.464 -0.204 -3.455 3.778 H40 A1JAP 89 A1JAP H41 H33 H 0 1 N N N N N N 222.011 205.882 218.139 1.621 -4.941 2.898 H41 A1JAP 90 A1JAP H42 H34 H 0 1 N N N N N N 222.340 204.415 216.190 1.760 -5.191 0.402 H42 A1JAP 91 A1JAP H43 H35 H 0 1 N N N N N N 221.790 203.002 217.153 0.377 -6.060 1.111 H43 A1JAP 92 A1JAP H45 H36 H 0 1 N N N N N N 219.813 205.086 212.451 -2.523 -4.660 -3.544 H45 A1JAP 93 A1JAP H44 H37 H 0 1 N N N N N N 221.455 205.576 212.988 -1.048 -3.835 -4.105 H44 A1JAP 94 A1JAP H46 H38 H 0 1 N N N N N N 222.129 203.139 212.805 -2.135 -1.634 -3.572 H46 A1JAP 95 A1JAP H50 H39 H 0 1 N N N N N N 222.144 205.148 220.937 3.447 -3.884 1.272 H50 A1JAP 96 A1JAP H51 H40 H 0 1 N N N N N N 220.787 206.130 220.289 3.413 -3.512 3.013 H51 A1JAP 97 A1JAP H52 H41 H 0 1 N N N N N N 220.340 203.347 221.401 3.388 -1.460 0.753 H52 A1JAP 98 A1JAP H53 H42 H 0 1 N N N N N N 220.419 204.781 222.480 3.354 -1.088 2.493 H53 A1JAP 99 A1JAP H55 H43 H 0 1 N N N N N N 218.814 206.793 220.546 5.445 -0.132 0.558 H55 A1JAP 100 A1JAP H56 H44 H 0 1 N N N N N N 217.253 206.304 221.290 5.554 0.180 2.308 H56 A1JAP 101 A1JAP H57 H45 H 0 1 N N N N N N 218.202 206.409 223.496 7.735 -0.997 2.382 H57 A1JAP 102 A1JAP H58 H46 H 0 1 N N N N N N 219.844 206.697 222.827 7.627 -1.308 0.633 H58 A1JAP 103 A1JAP H59 H47 H 0 1 N N N N N N 217.751 208.622 221.953 7.570 1.133 0.201 H59 A1JAP 104 A1JAP H60 H48 H 0 1 N N N N N N 218.139 208.651 223.707 7.679 1.444 1.950 H60 A1JAP 105 A1JAP H61 H49 H 0 1 N N N N N N 219.430 210.287 222.522 9.750 -0.109 0.336 H61 A1JAP 106 A1JAP H63 H50 H 0 1 N N N N N N 221.106 209.687 220.810 9.603 -0.726 2.734 H63 A1JAP 107 A1JAP H64 H51 H 0 1 N N N N N N 220.477 208.005 220.811 11.111 0.156 2.392 H64 A1JAP 108 A1JAP H62 H52 H 0 1 N N N N N N 219.417 209.359 220.293 9.753 0.989 3.184 H62 A1JAP 109 A1JAP H65 H53 H 0 1 N N N N N N 221.359 208.062 223.179 9.613 2.327 -0.262 H65 A1JAP 110 A1JAP H66 H54 H 0 1 N N N N N N 221.611 209.839 223.269 9.873 2.727 1.453 H66 A1JAP 111 A1JAP H67 H55 H 0 1 N N N N N N 219.675 209.784 225.013 12.038 1.518 1.406 H67 A1JAP 112 A1JAP H68 H56 H 0 1 N N N N N N 220.024 208.025 225.100 11.777 1.118 -0.308 H68 A1JAP 113 A1JAP H69 H57 H 0 1 N N N N N N 222.425 208.624 225.618 11.716 3.534 -0.863 H69 A1JAP 114 A1JAP H70 H58 H 0 1 N N N N N N 221.897 210.336 225.749 11.977 3.934 0.851 H70 A1JAP 115 A1JAP H71 H59 H 0 1 N N N N N N 220.638 208.118 227.360 13.883 2.262 -0.845 H71 A1JAP 116 A1JAP H74 H60 H 0 1 N N N N N N 220.039 209.962 228.889 13.932 1.774 1.585 H74 A1JAP 117 A1JAP H72 H61 H 0 1 N N N N N N 220.806 211.132 227.762 15.417 2.610 1.072 H72 A1JAP 118 A1JAP H73 H62 H 0 1 N N N N N N 219.369 210.191 227.238 14.142 3.508 1.929 H73 A1JAP 119 A1JAP H75 H63 H 0 1 N N N N N N 223.039 208.071 227.771 13.728 4.666 -1.559 H75 A1JAP 120 A1JAP H76 H64 H 0 1 N N N N N N 223.014 209.828 228.145 14.138 5.151 0.104 H76 A1JAP 121 A1JAP H77 H65 H 0 1 N N N N N N 221.823 209.509 230.147 16.275 3.903 -0.059 H77 A1JAP 122 A1JAP H78 H66 H 0 1 N N N N N N 221.293 207.858 229.678 15.865 3.418 -1.722 H78 A1JAP 123 A1JAP H79 H67 H 0 1 N N N N N N 223.848 207.305 229.732 15.789 5.803 -2.398 H79 A1JAP 124 A1JAP H80 H68 H 0 1 N N N N N N 223.971 208.807 230.711 16.199 6.287 -0.735 H80 A1JAP 125 A1JAP H81 H69 H 0 1 N N N N N N 222.305 207.831 232.277 17.932 4.496 -2.494 H81 A1JAP 126 A1JAP H82 H70 H 0 1 N N N N N N 223.903 206.300 233.364 18.223 7.444 -1.757 H82 A1JAP 127 A1JAP H83 H71 H 0 1 N N N N N N 224.882 206.264 231.858 19.409 6.480 -2.670 H83 A1JAP 128 A1JAP H84 H72 H 0 1 N N N N N N 224.695 207.800 232.771 17.806 6.813 -3.369 H84 A1JAP 129 A1JAP H87 H73 H 0 1 N N N N N N 221.948 205.391 232.242 18.441 5.879 0.179 H87 A1JAP 130 A1JAP H85 H74 H 0 1 N N N N N N 221.257 206.199 230.794 18.180 4.134 -0.054 H85 A1JAP 131 A1JAP H86 H75 H 0 1 N N N N N N 222.804 205.295 230.666 19.628 4.916 -0.734 H86 A1JAP 132 A1JAP H89 H76 H 0 1 N N N N N N 216.743 204.082 221.718 5.402 -2.544 -0.253 H89 A1JAP 133 A1JAP H90 H77 H 0 1 N N N N N N 217.989 202.788 221.692 6.802 -2.945 0.770 H90 A1JAP 134 A1JAP H88 H78 H 0 1 N N N N N N 217.965 203.985 223.031 5.286 -3.863 0.937 H88 A1JAP 135 A1JAP H92 H79 H 0 1 N N N N N N 214.320 201.100 228.474 -17.634 7.249 -1.749 H92 A1JAP 136 A1JAP H93 H80 H 0 1 N N N N N N 213.175 201.660 229.741 -18.162 8.239 -0.368 H93 A1JAP 137 A1JAP H91 H81 H 0 1 N N N N N N 213.021 202.269 228.058 -16.616 8.591 -1.176 H91 A1JAP 138 A1JAP H11 H82 H 0 1 N N N N N N 218.029 200.490 226.771 -12.632 3.979 1.463 H11 A1JAP 139 A1JAP H13 H83 H 0 1 N N N N N N 218.078 199.225 224.650 -13.391 1.620 1.371 H13 A1JAP 140 A1JAP H14 H84 H 0 1 N N N N N N 216.457 199.232 225.424 -14.762 2.740 1.185 H14 A1JAP 141 A1JAP H12 H85 H 0 1 N N N N N N 216.779 200.286 224.006 -14.092 1.909 -0.240 H12 A1JAP 142 A1JAP H15 H86 H 0 1 N N N N N N 219.417 201.048 224.632 -11.846 2.463 -1.065 H15 A1JAP 143 A1JAP H16 H87 H 0 1 N N N N N N 218.426 202.546 224.628 -10.936 3.833 -0.384 H16 A1JAP 144 A1JAP H18 H88 H 0 1 N N N N N N 219.334 203.318 226.620 -11.543 1.209 1.053 H18 A1JAP 145 A1JAP H17 H89 H 0 1 N N N N N N 219.830 201.676 227.155 -10.633 2.579 1.733 H17 A1JAP 146 A1JAP H48 H90 H 0 1 N N N N N N 222.305 203.270 210.416 -4.507 -3.323 -3.107 H48 A1JAP 147 A1JAP H47 H92 H 0 1 N N N N N N 221.200 204.470 210.352 -3.709 -2.416 -1.964 H47 A1JAP 148 A1JAP H94 H93 H 0 1 N N N N N N 220.525 207.290 215.362 -2.196 -6.092 -0.737 H94 A1JAP 149 A1JAP H95 H94 H 0 1 N N N N N N 218.586 201.925 212.148 -2.521 -2.228 -7.084 H95 A1JAP 150 A1JAP H54 H95 H 0 1 N N N N N N 217.606 204.628 219.538 5.363 -1.743 3.806 H54 A1JAP 151 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JAP C1 C2 SING N N 1 A1JAP C2 C3 SING N N 2 A1JAP C3 C4 SING N N 3 A1JAP C4 C5 SING N N 4 A1JAP C5 C6 SING N N 5 A1JAP C6 C7 SING N N 6 A1JAP C6 C8 SING N N 7 A1JAP C8 C9 SING N N 8 A1JAP C9 C10 SING N N 9 A1JAP C10 C11 SING N N 10 A1JAP C11 C12 SING N N 11 A1JAP C11 C13 SING N N 12 A1JAP C13 C14 SING N N 13 A1JAP C14 C15 SING N N 14 A1JAP C15 C16 SING N N 15 A1JAP C16 C17 SING N N 16 A1JAP C16 C18 SING N N 17 A1JAP C18 C19 SING N N 18 A1JAP C19 O1 SING N N 19 A1JAP O1 C20 SING N N 20 A1JAP C20 C21 SING N N 21 A1JAP C21 C22 SING N N 22 A1JAP C22 O2 SING N N 23 A1JAP O2 P1 SING N N 24 A1JAP P1 O3 SING N N 25 A1JAP P1 O4 SING N N 26 A1JAP O4 C23 SING N N 27 A1JAP C23 C24 SING N N 28 A1JAP C24 N1 SING N N 29 A1JAP C24 C25 SING N N 30 A1JAP C25 O5 SING N N 31 A1JAP C25 O6 DOUB N N 32 A1JAP P1 O7 DOUB N N 33 A1JAP C21 O8 SING N N 34 A1JAP O8 C26 SING N N 35 A1JAP C26 C27 SING N N 36 A1JAP C27 C28 SING N N 37 A1JAP C28 O9 SING N N 38 A1JAP C28 C29 SING N N 39 A1JAP C29 C30 SING N N 40 A1JAP C30 C31 SING N N 41 A1JAP C31 C32 SING N N 42 A1JAP C32 C33 SING N N 43 A1JAP C32 C34 SING N N 44 A1JAP C34 C35 SING N N 45 A1JAP C35 C36 SING N N 46 A1JAP C36 C37 SING N N 47 A1JAP C37 C38 SING N N 48 A1JAP C37 C39 SING N N 49 A1JAP C39 C40 SING N N 50 A1JAP C40 C41 SING N N 51 A1JAP C41 C42 SING N N 52 A1JAP C42 C43 SING N N 53 A1JAP C42 C44 SING N N 54 A1JAP C28 C45 SING N N 55 A1JAP C2 C46 SING N N 56 A1JAP C3 H6 SING N N 57 A1JAP C3 H5 SING N N 58 A1JAP C4 H7 SING N N 59 A1JAP C4 H8 SING N N 60 A1JAP C5 H9 SING N N 61 A1JAP C5 H10 SING N N 62 A1JAP C2 H4 SING N N 63 A1JAP C1 H2 SING N N 64 A1JAP C1 H3 SING N N 65 A1JAP C1 H1 SING N N 66 A1JAP C10 H19 SING N N 67 A1JAP C10 H20 SING N N 68 A1JAP C11 H21 SING N N 69 A1JAP C12 H24 SING N N 70 A1JAP C12 H22 SING N N 71 A1JAP C12 H23 SING N N 72 A1JAP C13 H25 SING N N 73 A1JAP C13 H26 SING N N 74 A1JAP C14 H27 SING N N 75 A1JAP C14 H28 SING N N 76 A1JAP C15 H29 SING N N 77 A1JAP C15 H30 SING N N 78 A1JAP C16 H31 SING N N 79 A1JAP C17 H34 SING N N 80 A1JAP C17 H32 SING N N 81 A1JAP C17 H33 SING N N 82 A1JAP C18 H35 SING N N 83 A1JAP C18 H36 SING N N 84 A1JAP C19 H37 SING N N 85 A1JAP C19 H38 SING N N 86 A1JAP C20 H39 SING N N 87 A1JAP C20 H40 SING N N 88 A1JAP C21 H41 SING N N 89 A1JAP C22 H42 SING N N 90 A1JAP C22 H43 SING N N 91 A1JAP C23 H45 SING N N 92 A1JAP C23 H44 SING N N 93 A1JAP C24 H46 SING N N 94 A1JAP C26 H50 SING N N 95 A1JAP C26 H51 SING N N 96 A1JAP C27 H52 SING N N 97 A1JAP C27 H53 SING N N 98 A1JAP C29 H55 SING N N 99 A1JAP C29 H56 SING N N 100 A1JAP C30 H57 SING N N 101 A1JAP C30 H58 SING N N 102 A1JAP C31 H59 SING N N 103 A1JAP C31 H60 SING N N 104 A1JAP C32 H61 SING N N 105 A1JAP C33 H63 SING N N 106 A1JAP C33 H64 SING N N 107 A1JAP C33 H62 SING N N 108 A1JAP C34 H65 SING N N 109 A1JAP C34 H66 SING N N 110 A1JAP C35 H67 SING N N 111 A1JAP C35 H68 SING N N 112 A1JAP C36 H69 SING N N 113 A1JAP C36 H70 SING N N 114 A1JAP C37 H71 SING N N 115 A1JAP C38 H74 SING N N 116 A1JAP C38 H72 SING N N 117 A1JAP C38 H73 SING N N 118 A1JAP C39 H75 SING N N 119 A1JAP C39 H76 SING N N 120 A1JAP C40 H77 SING N N 121 A1JAP C40 H78 SING N N 122 A1JAP C41 H79 SING N N 123 A1JAP C41 H80 SING N N 124 A1JAP C42 H81 SING N N 125 A1JAP C43 H82 SING N N 126 A1JAP C43 H83 SING N N 127 A1JAP C43 H84 SING N N 128 A1JAP C44 H87 SING N N 129 A1JAP C44 H85 SING N N 130 A1JAP C44 H86 SING N N 131 A1JAP C45 H89 SING N N 132 A1JAP C45 H90 SING N N 133 A1JAP C45 H88 SING N N 134 A1JAP C46 H92 SING N N 135 A1JAP C46 H93 SING N N 136 A1JAP C46 H91 SING N N 137 A1JAP C6 H11 SING N N 138 A1JAP C7 H13 SING N N 139 A1JAP C7 H14 SING N N 140 A1JAP C7 H12 SING N N 141 A1JAP C8 H15 SING N N 142 A1JAP C8 H16 SING N N 143 A1JAP C9 H18 SING N N 144 A1JAP C9 H17 SING N N 145 A1JAP N1 H48 SING N N 146 A1JAP N1 H47 SING N N 147 A1JAP O3 H94 SING N N 148 A1JAP O5 H95 SING N N 149 A1JAP O9 H54 SING N N 150 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JAP InChI InChI 1.06 "InChI=1S/C46H94NO9P/c1-36(2)17-11-19-38(5)21-13-23-40(7)24-15-26-42(9)28-31-53-33-43(34-55-57(51,52)56-35-44(47)45(48)49)54-32-30-46(10,50)29-16-27-41(8)25-14-22-39(6)20-12-18-37(3)4/h36-44,50H,11-35,47H2,1-10H3,(H,48,49)(H,51,52)/t38-,39-,40-,41-,42-,43+,44+,46-/m1/s1" A1JAP InChIKey InChI 1.06 YALRQOMGANIIQK-QQLPJPLTSA-N A1JAP SMILES_CANONICAL CACTVS 3.385 "CC(C)CCC[C@@H](C)CCC[C@@H](C)CCC[C@@H](C)CCOC[C@@H](CO[P](O)(=O)OC[C@H](N)C(O)=O)OCC[C@](C)(O)CCC[C@H](C)CCC[C@H](C)CCCC(C)C" A1JAP SMILES CACTVS 3.385 "CC(C)CCC[CH](C)CCC[CH](C)CCC[CH](C)CCOC[CH](CO[P](O)(=O)OC[CH](N)C(O)=O)OCC[C](C)(O)CCC[CH](C)CCC[CH](C)CCCC(C)C" A1JAP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](CCC[C@H](C)CCCC(C)C)CCC[C@@H](C)CCOC[C@@H](COP(=O)(O)OC[C@@H](C(=O)O)N)OCC[C@@](C)(CCC[C@H](C)CCC[C@H](C)CCCC(C)C)O" A1JAP SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CCCC(C)CCCC(C)CCCC(C)CCOCC(COP(=O)(O)OCC(C(=O)O)N)OCCC(C)(CCCC(C)CCCC(C)CCCC(C)C)O" # _pdbx_chem_comp_identifier.comp_id A1JAP _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-3-[oxidanyl-[(2~{S})-3-[(3~{R},7~{R},11~{R})-3,7,11,15-tetramethylhexadecoxy]-2-[(3~{R},7~{R},11~{R})-3,7,11,15-tetramethyl-3-oxidanyl-hexadecoxy]propoxy]phosphoryl]oxy-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JAP "Create component" 2025-04-09 PDBE A1JAP "Modify name" 2025-05-13 PDBE A1JAP "Initial release" 2025-12-24 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1JAP _pdbx_chem_comp_synonyms.name "(2~{S})-2-azanyl-3-[oxidanyl-[(2~{S})-3-[(3~{R},7~{R},11~{R})-3,7,11,15-tetramethylhexadecoxy]-2-[(3~{R},7~{R},11~{R})-3,7,11,15-tetramethyl-3-oxidanyl-hexadecoxy]propoxy]phosphoryl]oxy-propanoic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #