data_A1JB4 # _chem_comp.id A1JB4 _chem_comp.name "5-[2-[4-[[3-chloranyl-4-(trifluoromethyloxy)phenyl]methylamino]butoxy]ethylamino]benzo[c][2,6]naphthyridine-8-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H27 Cl F3 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-05-07 _chem_comp.pdbx_modified_date 2025-10-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 561.983 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JB4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9QY7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JB4 C1 C1 C 0 1 Y N N N N N -5.216 -1.249 16.038 -10.062 1.340 -0.498 C1 A1JB4 1 A1JB4 N1 N1 N 0 1 Y N N N N N -5.151 2.170 14.844 -6.650 0.634 0.556 N1 A1JB4 2 A1JB4 C2 C2 C 0 1 Y N N N N N -5.438 -1.110 17.434 -10.490 0.061 -0.880 C2 A1JB4 3 A1JB4 N2 N2 N 0 1 Y N N N N N -5.992 4.193 19.547 -6.880 -4.235 -0.406 N2 A1JB4 4 A1JB4 C3 C3 C 0 1 Y N N N N N -5.594 0.153 18.006 -9.648 -1.006 -0.783 C3 A1JB4 5 A1JB4 N3 N3 N 0 1 N N N N N N -5.127 4.509 14.457 -4.514 -0.059 1.173 N3 A1JB4 6 A1JB4 C4 C4 C 0 1 Y N N N N N -5.522 1.292 17.171 -8.349 -0.834 -0.300 C4 A1JB4 7 A1JB4 N4 N4 N 0 1 N N N N N N 3.314 6.230 15.453 4.155 0.234 -0.292 N4 A1JB4 8 A1JB4 C5 C5 C 0 1 Y N N N N N -5.300 1.121 15.773 -7.898 0.449 0.090 C5 A1JB4 9 A1JB4 C6 C6 C 0 1 Y N N N N N -5.151 -0.161 15.211 -8.775 1.536 -0.016 C6 A1JB4 10 A1JB4 C7 C7 C 0 1 Y N N N N N -5.256 3.416 15.339 -5.776 -0.336 0.684 C7 A1JB4 11 A1JB4 C8 C8 C 0 1 Y N N N N N -5.509 3.725 16.770 -6.126 -1.707 0.314 C8 A1JB4 12 A1JB4 C9 C9 C 0 1 Y N N N N N -5.667 5.044 17.265 -5.236 -2.776 0.429 C9 A1JB4 13 A1JB4 C10 C10 C 0 1 Y N N N N N -5.904 5.225 18.639 -5.660 -4.023 0.056 C10 A1JB4 14 A1JB4 C11 C11 C 0 1 Y N N N N N -5.856 2.924 19.082 -7.766 -3.269 -0.540 C11 A1JB4 15 A1JB4 C12 C12 C 0 1 Y N N N N N -5.622 2.639 17.668 -7.425 -1.966 -0.185 C12 A1JB4 16 A1JB4 C13 C13 C 0 1 N N N N N N -4.712 4.354 13.061 -4.157 1.312 1.546 C13 A1JB4 17 A1JB4 C14 C14 C 0 1 N N N N N N -3.170 4.089 12.936 -2.714 1.343 2.053 C14 A1JB4 18 A1JB4 C15 C15 C 0 1 N N N N N N -1.056 4.764 13.558 -0.446 0.997 1.357 C15 A1JB4 19 A1JB4 C16 C16 C 0 1 N N N N N N -0.283 5.977 14.077 0.406 0.616 0.145 C16 A1JB4 20 A1JB4 C17 C17 C 0 1 N N N N N N 1.134 5.521 14.501 1.884 0.615 0.541 C17 A1JB4 21 A1JB4 C18 C18 C 0 1 N N N N N N 1.909 6.665 15.136 2.736 0.235 -0.672 C18 A1JB4 22 A1JB4 F2 F1 F 0 1 N N N N N N 8.638 4.552 19.592 12.444 0.967 0.430 F2 A1JB4 23 A1JB4 C26 C19 C 0 1 N N N N N N 9.347 5.669 19.341 11.126 1.135 -0.007 C26 A1JB4 24 A1JB4 F F2 F 0 1 N N N N N N 10.622 5.431 19.544 10.507 2.133 0.753 F A1JB4 25 A1JB4 F1 F3 F 0 1 N N N N N N 9.029 6.561 20.215 11.125 1.506 -1.355 F1 A1JB4 26 A1JB4 O2 O1 O 0 1 N N N N N N 9.187 6.193 18.042 10.412 -0.094 0.149 O2 A1JB4 27 A1JB4 C23 C20 C 0 1 Y N N N N N 7.907 6.463 17.597 9.108 -0.102 -0.231 C23 A1JB4 28 A1JB4 C22 C21 C 0 1 Y N N N N N 7.329 7.715 17.846 8.526 1.048 -0.744 C22 A1JB4 29 A1JB4 C21 C22 C 0 1 Y N N N N N 6.020 7.918 17.417 7.200 1.038 -1.130 C21 A1JB4 30 A1JB4 C24 C23 C 0 1 Y N N N N N 7.231 5.463 16.906 8.356 -1.263 -0.112 C24 A1JB4 31 A1JB4 CL CL1 CL 0 0 N N N N N N 8.074 4.072 16.466 9.080 -2.705 0.529 CL A1JB4 32 A1JB4 C25 C24 C 0 1 Y N N N N N 5.918 5.640 16.487 7.030 -1.270 -0.505 C25 A1JB4 33 A1JB4 C20 C25 C 0 1 Y N N N N N 5.310 6.891 16.774 6.451 -0.119 -1.006 C20 A1JB4 34 A1JB4 C19 C26 C 0 1 N N N N N N 3.858 7.134 16.496 5.006 -0.128 -1.433 C19 A1JB4 35 A1JB4 O1 O2 O 0 1 N N N N N N -2.424 5.158 13.420 -1.827 0.998 0.987 O1 A1JB4 36 A1JB4 C C27 C 0 1 N N N N N N -5.016 -2.591 15.429 -10.985 2.489 -0.615 C A1JB4 37 A1JB4 O O3 O 0 1 N N N N N N -5.324 -2.897 14.221 -10.618 3.599 -0.285 O A1JB4 38 A1JB4 N N5 N 0 1 N N N N N N -4.483 -3.492 16.267 -12.234 2.304 -1.088 N A1JB4 39 A1JB4 H1 H1 H 0 1 N N N N N N -5.486 -1.990 18.058 -11.494 -0.079 -1.254 H1 A1JB4 40 A1JB4 H2 H2 H 0 1 N N N N N N -5.767 0.259 19.067 -9.987 -1.988 -1.079 H2 A1JB4 41 A1JB4 H3 H3 H 0 1 N N N N N N -4.462 5.126 14.877 -3.864 -0.773 1.269 H3 A1JB4 42 A1JB4 H4 H4 H 0 1 N N N N N N 3.308 5.289 15.791 4.427 1.126 0.093 H4 A1JB4 43 A1JB4 H6 H6 H 0 1 N N N N N N -4.989 -0.283 14.150 -8.451 2.524 0.276 H6 A1JB4 44 A1JB4 H7 H7 H 0 1 N N N N N N -5.607 5.893 16.600 -4.235 -2.623 0.804 H7 A1JB4 45 A1JB4 H8 H8 H 0 1 N N N N N N -6.024 6.234 19.005 -4.979 -4.857 0.142 H8 A1JB4 46 A1JB4 H9 H9 H 0 1 N N N N N N -5.923 2.101 19.778 -8.752 -3.486 -0.921 H9 A1JB4 47 A1JB4 H10 H10 H 0 1 N N N N N N -4.961 5.274 12.512 -4.250 1.961 0.676 H10 A1JB4 48 A1JB4 H11 H11 H 0 1 N N N N N N -5.256 3.505 12.620 -4.826 1.660 2.333 H11 A1JB4 49 A1JB4 H12 H12 H 0 1 N N N N N N -2.915 3.187 13.512 -2.477 2.344 2.414 H12 A1JB4 50 A1JB4 H13 H13 H 0 1 N N N N N N -2.920 3.931 11.877 -2.599 0.627 2.867 H13 A1JB4 51 A1JB4 H14 H14 H 0 1 N N N N N N -0.974 3.932 14.273 -0.285 0.274 2.156 H14 A1JB4 52 A1JB4 H15 H15 H 0 1 N N N N N N -0.654 4.451 12.583 -0.162 1.991 1.703 H15 A1JB4 53 A1JB4 H16 H16 H 0 1 N N N N N N -0.206 6.734 13.282 0.122 -0.377 -0.201 H16 A1JB4 54 A1JB4 H17 H17 H 0 1 N N N N N N -0.808 6.407 14.943 0.244 1.339 -0.655 H17 A1JB4 55 A1JB4 H18 H18 H 0 1 N N N N N N 1.045 4.700 15.228 2.168 1.609 0.887 H18 A1JB4 56 A1JB4 H19 H19 H 0 1 N N N N N N 1.678 5.167 13.613 2.046 -0.108 1.340 H19 A1JB4 57 A1JB4 H20 H20 H 0 1 N N N N N N 1.941 7.514 14.437 2.575 0.958 -1.471 H20 A1JB4 58 A1JB4 H21 H21 H 0 1 N N N N N N 1.406 6.973 16.065 2.452 -0.759 -1.018 H21 A1JB4 59 A1JB4 H22 H22 H 0 1 N N N N N N 7.879 8.494 18.352 9.109 1.952 -0.840 H22 A1JB4 60 A1JB4 H23 H23 H 0 1 N N N N N N 5.546 8.875 17.580 6.747 1.933 -1.529 H23 A1JB4 61 A1JB4 H24 H24 H 0 1 N N N N N N 5.383 4.860 15.966 6.444 -2.171 -0.410 H24 A1JB4 62 A1JB4 H25 H25 H 0 1 N N N N N N 3.734 8.174 16.160 4.738 -1.125 -1.785 H25 A1JB4 63 A1JB4 H26 H26 H 0 1 N N N N N N 3.291 6.979 17.426 4.860 0.592 -2.238 H26 A1JB4 64 A1JB4 H27 H27 H 0 1 N N N N N N -4.317 -4.428 15.955 -12.527 1.418 -1.351 H27 A1JB4 65 A1JB4 H28 H28 H 0 1 N N N N N N -4.252 -3.228 17.204 -12.840 3.058 -1.165 H28 A1JB4 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JB4 C14 C13 SING N N 1 A1JB4 C14 O1 SING N N 2 A1JB4 C13 N3 SING N N 3 A1JB4 O1 C15 SING N N 4 A1JB4 C15 C16 SING N N 5 A1JB4 C16 C17 SING N N 6 A1JB4 O C DOUB N N 7 A1JB4 N3 C7 SING N N 8 A1JB4 C17 C18 SING N N 9 A1JB4 N1 C7 DOUB Y N 10 A1JB4 N1 C5 SING Y N 11 A1JB4 C18 N4 SING N N 12 A1JB4 C6 C5 DOUB Y N 13 A1JB4 C6 C1 SING Y N 14 A1JB4 C7 C8 SING Y N 15 A1JB4 C C1 SING N N 16 A1JB4 C N SING N N 17 A1JB4 N4 C19 SING N N 18 A1JB4 C5 C4 SING Y N 19 A1JB4 C1 C2 DOUB Y N 20 A1JB4 CL C24 SING N N 21 A1JB4 C25 C20 DOUB Y N 22 A1JB4 C25 C24 SING Y N 23 A1JB4 C19 C20 SING N N 24 A1JB4 C8 C9 DOUB Y N 25 A1JB4 C8 C12 SING Y N 26 A1JB4 C20 C21 SING Y N 27 A1JB4 C24 C23 DOUB Y N 28 A1JB4 C4 C12 SING Y N 29 A1JB4 C4 C3 DOUB Y N 30 A1JB4 C9 C10 SING Y N 31 A1JB4 C21 C22 DOUB Y N 32 A1JB4 C2 C3 SING Y N 33 A1JB4 C23 C22 SING Y N 34 A1JB4 C23 O2 SING N N 35 A1JB4 C12 C11 DOUB Y N 36 A1JB4 O2 C26 SING N N 37 A1JB4 C10 N2 DOUB Y N 38 A1JB4 C11 N2 SING Y N 39 A1JB4 C26 F SING N N 40 A1JB4 C26 F2 SING N N 41 A1JB4 C26 F1 SING N N 42 A1JB4 C2 H1 SING N N 43 A1JB4 C3 H2 SING N N 44 A1JB4 N3 H3 SING N N 45 A1JB4 N4 H4 SING N N 46 A1JB4 C6 H6 SING N N 47 A1JB4 C9 H7 SING N N 48 A1JB4 C10 H8 SING N N 49 A1JB4 C11 H9 SING N N 50 A1JB4 C13 H10 SING N N 51 A1JB4 C13 H11 SING N N 52 A1JB4 C14 H12 SING N N 53 A1JB4 C14 H13 SING N N 54 A1JB4 C15 H14 SING N N 55 A1JB4 C15 H15 SING N N 56 A1JB4 C16 H16 SING N N 57 A1JB4 C16 H17 SING N N 58 A1JB4 C17 H18 SING N N 59 A1JB4 C17 H19 SING N N 60 A1JB4 C18 H20 SING N N 61 A1JB4 C18 H21 SING N N 62 A1JB4 C22 H22 SING N N 63 A1JB4 C21 H23 SING N N 64 A1JB4 C25 H24 SING N N 65 A1JB4 C19 H25 SING N N 66 A1JB4 C19 H26 SING N N 67 A1JB4 N H27 SING N N 68 A1JB4 N H28 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JB4 InChI InChI 1.06 "InChI=1S/C27H27ClF3N5O3/c28-22-13-17(3-6-24(22)39-27(29,30)31)15-33-8-1-2-11-38-12-10-35-26-20-7-9-34-16-21(20)19-5-4-18(25(32)37)14-23(19)36-26/h3-7,9,13-14,16,33H,1-2,8,10-12,15H2,(H2,32,37)(H,35,36)" A1JB4 InChIKey InChI 1.06 KFSMADUCMQUOPB-UHFFFAOYSA-N A1JB4 SMILES_CANONICAL CACTVS 3.385 "NC(=O)c1ccc2c(c1)nc(NCCOCCCCNCc3ccc(OC(F)(F)F)c(Cl)c3)c4ccncc24" A1JB4 SMILES CACTVS 3.385 "NC(=O)c1ccc2c(c1)nc(NCCOCCCCNCc3ccc(OC(F)(F)F)c(Cl)c3)c4ccncc24" A1JB4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1CNCCCCOCCNc2c3ccncc3c4ccc(cc4n2)C(=O)N)Cl)OC(F)(F)F" A1JB4 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1CNCCCCOCCNc2c3ccncc3c4ccc(cc4n2)C(=O)N)Cl)OC(F)(F)F" # _pdbx_chem_comp_identifier.comp_id A1JB4 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-[2-[4-[[3-chloranyl-4-(trifluoromethyloxy)phenyl]methylamino]butoxy]ethylamino]benzo[c][2,6]naphthyridine-8-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JB4 "Create component" 2025-05-07 PDBE A1JB4 "Initial release" 2025-10-22 RCSB #