data_A1JBI # _chem_comp.id A1JBI _chem_comp.name "3-[(3-chloranyl-2-methoxy-phenyl)amino]-2-[3-[[(2~{S})-1,4-dioxan-2-yl]methoxy]pyridin-4-yl]-1,5,6,7-tetrahydropyrrolo[3,2-c]pyridin-4-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H25 Cl N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-04-28 _chem_comp.pdbx_modified_date 2025-10-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 484.932 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JBI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9QXN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JBI C1 C1 C 0 1 N N N N N N 26.680 4.058 52.489 -1.693 -3.496 0.903 C1 A1JBI 1 A1JBI C2 C2 C 0 1 N N N N N N 25.077 5.706 51.506 0.281 -4.860 1.472 C2 A1JBI 2 A1JBI C3 C3 C 0 1 N N N N N N 24.055 4.621 51.253 0.841 -4.682 0.060 C3 A1JBI 3 A1JBI C4 C4 C 0 1 Y N N N N N 24.357 3.484 52.157 0.373 -3.355 -0.482 C4 A1JBI 4 A1JBI C8 C5 C 0 1 Y N N N N N 28.285 0.014 54.636 -3.145 1.175 0.476 C8 A1JBI 5 A1JBI C9 C6 C 0 1 N N N N N N 29.687 1.901 55.005 -3.612 2.222 -1.608 C9 A1JBI 6 A1JBI C10 C7 C 0 1 Y N N N N N 29.005 -1.155 54.418 -3.247 2.002 1.584 C10 A1JBI 7 A1JBI C11 C8 C 0 1 Y N N N N N 28.532 -2.119 53.554 -2.372 1.848 2.644 C11 A1JBI 8 A1JBI C12 C9 C 0 1 Y N N N N N 27.336 -1.917 52.891 -1.394 0.872 2.603 C12 A1JBI 9 A1JBI C13 C10 C 0 1 Y N N N N N 26.599 -0.759 53.082 -1.286 0.043 1.502 C13 A1JBI 10 A1JBI C14 C11 C 0 1 Y N N N N N 24.113 1.616 53.349 0.128 -1.423 -1.563 C14 A1JBI 11 A1JBI C15 C12 C 0 1 Y N N N N N 23.404 0.490 53.984 0.421 -0.296 -2.468 C15 A1JBI 12 A1JBI C16 C13 C 0 1 Y N N N N N 23.961 -0.178 55.074 -0.227 -0.176 -3.704 C16 A1JBI 13 A1JBI C17 C14 C 0 1 Y N N N N N 23.235 -1.181 55.681 0.078 0.893 -4.519 C17 A1JBI 14 A1JBI C18 C15 C 0 1 Y N N N N N 21.453 -0.901 54.275 1.598 1.731 -2.994 C18 A1JBI 15 A1JBI C19 C16 C 0 1 Y N N N N N 22.104 0.119 53.603 1.356 0.693 -2.113 C19 A1JBI 16 A1JBI C20 C17 C 0 1 N N N N N N 20.109 0.998 52.592 2.943 1.674 -0.639 C20 A1JBI 17 A1JBI C21 C18 C 0 1 N N S N N N 19.785 2.025 51.541 3.574 1.434 0.734 C21 A1JBI 18 A1JBI C24 C19 C 0 1 N N N N N N 20.007 1.562 50.146 4.486 2.612 1.090 C24 A1JBI 19 A1JBI O1 O1 O 0 1 N N N N N N 27.821 3.799 52.872 -2.843 -3.153 1.101 O1 A1JBI 20 A1JBI N1 N1 N 0 1 N N N N N N 26.415 5.181 51.793 -1.135 -4.537 1.567 N1 A1JBI 21 A1JBI C5 C20 C 0 1 Y N N N N N 25.584 3.236 52.727 -0.838 -2.805 -0.073 C5 A1JBI 22 A1JBI C6 C21 C 0 1 Y N N N N N 25.461 2.066 53.481 -0.990 -1.548 -0.778 C6 A1JBI 23 A1JBI N2 N2 N 0 1 N N N N N N 26.419 1.436 54.238 -2.056 -0.650 -0.679 N2 A1JBI 24 A1JBI C7 C22 C 0 1 Y N N N N N 27.080 0.220 53.956 -2.164 0.187 0.436 C7 A1JBI 25 A1JBI O2 O2 O 0 1 N N N N N N 28.745 0.961 55.508 -4.005 1.324 -0.568 O2 A1JBI 26 A1JBI CL1 CL1 CL 0 0 N N N N N N 30.486 -1.385 55.294 -4.473 3.230 1.640 CL1 A1JBI 27 A1JBI N3 N3 N 0 1 Y N N N N N 23.479 2.526 52.535 0.935 -2.527 -1.363 N3 A1JBI 28 A1JBI N4 N4 N 0 1 Y N N N N N 22.004 -1.541 55.311 0.966 1.798 -4.151 N4 A1JBI 29 A1JBI O3 O3 O 0 1 N N N N N N 21.520 0.759 52.539 2.009 0.630 -0.923 O3 A1JBI 30 A1JBI O4 O4 O 0 1 N N N N N N 20.541 3.194 51.840 4.351 0.233 0.700 O4 A1JBI 31 A1JBI C22 C23 C 0 1 N N N N N N 20.306 4.229 50.896 5.023 -0.050 1.931 C22 A1JBI 32 A1JBI C23 C24 C 0 1 N N N N N N 20.583 3.746 49.516 5.935 1.128 2.287 C23 A1JBI 33 A1JBI O5 O5 O 0 1 N N N N N N 19.775 2.610 49.216 5.159 2.329 2.321 O5 A1JBI 34 A1JBI H1 H1 H 0 1 N N N N N N 25.136 6.346 50.613 0.426 -5.895 1.779 H1 A1JBI 35 A1JBI H2 H2 H 0 1 N N N N N N 24.745 6.306 52.366 0.835 -4.212 2.151 H2 A1JBI 36 A1JBI H3 H3 H 0 1 N N N N N N 23.045 5.004 51.460 1.930 -4.697 0.094 H3 A1JBI 37 A1JBI H4 H4 H 0 1 N N N N N N 24.114 4.290 50.206 0.482 -5.489 -0.579 H4 A1JBI 38 A1JBI H5 H5 H 0 1 N N N N N N 29.971 2.600 55.805 -4.385 2.248 -2.377 H5 A1JBI 39 A1JBI H6 H6 H 0 1 N N N N N N 30.581 1.369 54.649 -3.478 3.221 -1.195 H6 A1JBI 40 A1JBI H7 H7 H 0 1 N N N N N N 29.237 2.461 54.172 -2.675 1.881 -2.048 H7 A1JBI 41 A1JBI H8 H8 H 0 1 N N N N N N 29.093 -3.028 53.396 -2.453 2.493 3.507 H8 A1JBI 42 A1JBI H9 H9 H 0 1 N N N N N N 26.970 -2.674 52.213 -0.710 0.759 3.431 H9 A1JBI 43 A1JBI H10 H10 H 0 1 N N N N N N 25.664 -0.615 52.562 -0.521 -0.718 1.472 H10 A1JBI 44 A1JBI H11 H11 H 0 1 N N N N N N 24.944 0.086 55.436 -0.955 -0.911 -4.015 H11 A1JBI 45 A1JBI H12 H12 H 0 1 N N N N N N 23.690 -1.708 56.507 -0.418 0.992 -5.473 H12 A1JBI 46 A1JBI H13 H13 H 0 1 N N N N N N 20.464 -1.190 53.951 2.317 2.494 -2.734 H13 A1JBI 47 A1JBI H14 H14 H 0 1 N N N N N N 19.829 1.377 53.586 2.425 2.633 -0.638 H14 A1JBI 48 A1JBI H15 H15 H 0 1 N N N N N N 19.562 0.066 52.387 3.722 1.682 -1.401 H15 A1JBI 49 A1JBI H16 H16 H 0 1 N N N N N N 18.717 2.270 51.642 2.790 1.340 1.485 H16 A1JBI 50 A1JBI H17 H17 H 0 1 N N N N N N 19.319 0.731 49.930 5.221 2.756 0.298 H17 A1JBI 51 A1JBI H18 H18 H 0 1 N N N N N N 21.046 1.215 50.044 3.888 3.516 1.200 H18 A1JBI 52 A1JBI H19 H19 H 0 1 N N N N N N 27.196 5.699 51.443 -1.702 -5.089 2.128 H19 A1JBI 53 A1JBI H20 H20 H 0 1 N N N N N N 26.679 1.892 55.089 -2.721 -0.607 -1.384 H20 A1JBI 54 A1JBI H21 H21 H 0 1 N N N N N N 22.517 2.486 52.264 1.783 -2.681 -1.806 H21 A1JBI 55 A1JBI H22 H22 H 0 1 N N N N N N 20.965 5.081 51.121 4.288 -0.194 2.722 H22 A1JBI 56 A1JBI H23 H23 H 0 1 N N N N N N 19.256 4.550 50.964 5.621 -0.954 1.820 H23 A1JBI 57 A1JBI H24 H24 H 0 1 N N N N N N 21.644 3.468 49.435 6.385 0.957 3.265 H24 A1JBI 58 A1JBI H25 H25 H 0 1 N N N N N N 20.359 4.550 48.799 6.719 1.221 1.536 H25 A1JBI 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JBI O5 C23 SING N N 1 A1JBI O5 C24 SING N N 2 A1JBI C23 C22 SING N N 3 A1JBI C24 C21 SING N N 4 A1JBI C22 O4 SING N N 5 A1JBI C3 C2 SING N N 6 A1JBI C3 C4 SING N N 7 A1JBI C2 N1 SING N N 8 A1JBI C21 O4 SING N N 9 A1JBI C21 C20 SING N N 10 A1JBI N1 C1 SING N N 11 A1JBI C4 N3 SING Y N 12 A1JBI C4 C5 DOUB Y N 13 A1JBI C1 C5 SING N N 14 A1JBI C1 O1 DOUB N N 15 A1JBI N3 C14 SING Y N 16 A1JBI O3 C20 SING N N 17 A1JBI O3 C19 SING N N 18 A1JBI C5 C6 SING Y N 19 A1JBI C12 C13 DOUB Y N 20 A1JBI C12 C11 SING Y N 21 A1JBI C13 C7 SING Y N 22 A1JBI C14 C6 DOUB Y N 23 A1JBI C14 C15 SING N N 24 A1JBI C6 N2 SING N N 25 A1JBI C11 C10 DOUB Y N 26 A1JBI C19 C15 DOUB Y N 27 A1JBI C19 C18 SING Y N 28 A1JBI C7 N2 SING N N 29 A1JBI C7 C8 DOUB Y N 30 A1JBI C15 C16 SING Y N 31 A1JBI C18 N4 DOUB Y N 32 A1JBI C10 C8 SING Y N 33 A1JBI C10 CL1 SING N N 34 A1JBI C8 O2 SING N N 35 A1JBI C9 O2 SING N N 36 A1JBI C16 C17 DOUB Y N 37 A1JBI N4 C17 SING Y N 38 A1JBI C2 H1 SING N N 39 A1JBI C2 H2 SING N N 40 A1JBI C3 H3 SING N N 41 A1JBI C3 H4 SING N N 42 A1JBI C9 H5 SING N N 43 A1JBI C9 H6 SING N N 44 A1JBI C9 H7 SING N N 45 A1JBI C11 H8 SING N N 46 A1JBI C12 H9 SING N N 47 A1JBI C13 H10 SING N N 48 A1JBI C16 H11 SING N N 49 A1JBI C17 H12 SING N N 50 A1JBI C18 H13 SING N N 51 A1JBI C20 H14 SING N N 52 A1JBI C20 H15 SING N N 53 A1JBI C21 H16 SING N N 54 A1JBI C24 H17 SING N N 55 A1JBI C24 H18 SING N N 56 A1JBI N1 H19 SING N N 57 A1JBI N2 H20 SING N N 58 A1JBI N3 H21 SING N N 59 A1JBI C22 H22 SING N N 60 A1JBI C22 H23 SING N N 61 A1JBI C23 H24 SING N N 62 A1JBI C23 H25 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JBI InChI InChI 1.06 "InChI=1S/C24H25ClN4O5/c1-31-23-16(25)3-2-4-18(23)29-22-20-17(6-8-27-24(20)30)28-21(22)15-5-7-26-11-19(15)34-13-14-12-32-9-10-33-14/h2-5,7,11,14,28-29H,6,8-10,12-13H2,1H3,(H,27,30)/t14-/m0/s1" A1JBI InChIKey InChI 1.06 VYQVHWNNPKOJEA-AWEZNQCLSA-N A1JBI SMILES_CANONICAL CACTVS 3.385 "COc1c(Cl)cccc1Nc2c([nH]c3CCNC(=O)c23)c4ccncc4OC[C@@H]5COCCO5" A1JBI SMILES CACTVS 3.385 "COc1c(Cl)cccc1Nc2c([nH]c3CCNC(=O)c23)c4ccncc4OC[CH]5COCCO5" A1JBI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1c(cccc1Cl)Nc2c3c([nH]c2c4ccncc4OC[C@@H]5COCCO5)CCNC3=O" A1JBI SMILES "OpenEye OEToolkits" 2.0.7 "COc1c(cccc1Cl)Nc2c3c([nH]c2c4ccncc4OCC5COCCO5)CCNC3=O" # _pdbx_chem_comp_identifier.comp_id A1JBI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[(3-chloranyl-2-methoxy-phenyl)amino]-2-[3-[[(2~{S})-1,4-dioxan-2-yl]methoxy]pyridin-4-yl]-1,5,6,7-tetrahydropyrrolo[3,2-c]pyridin-4-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JBI "Create component" 2025-04-28 PDBE A1JBI "Initial release" 2025-10-15 RCSB #