data_A1JBJ # _chem_comp.id A1JBJ _chem_comp.name "1-[3-[1-methyl-4-(pyridin-3-ylmethylamino)pyrazolo[3,4-d]pyrimidin-6-yl]phenyl]-3-[3-(trifluoromethyl)phenyl]thiourea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H21 F3 N8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-04-28 _chem_comp.pdbx_modified_date 2025-09-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 534.559 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JBJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9R1P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JBJ C12 C1 C 0 1 N N N N N N -22.105 30.679 20.220 -1.253 -2.290 0.310 C12 A1JBJ 1 A1JBJ C01 C2 C 0 1 N N N N N N -28.972 32.647 18.631 -7.797 0.948 -0.620 C01 A1JBJ 2 A1JBJ C03 C3 C 0 1 Y N N N N N -26.787 31.492 18.900 -5.421 0.196 -0.251 C03 A1JBJ 3 A1JBJ C05 C4 C 0 1 Y N N N N N -25.602 29.854 17.700 -3.402 1.226 0.171 C05 A1JBJ 4 A1JBJ C07 C5 C 0 1 Y N N N N N -24.618 30.705 19.630 -3.383 -1.083 0.028 C07 A1JBJ 5 A1JBJ C08 C6 C 0 1 Y N N N N N -25.750 31.537 19.815 -4.772 -1.054 -0.214 C08 A1JBJ 6 A1JBJ C09 C7 C 0 1 Y N N N N N -26.144 32.516 20.789 -5.757 -2.038 -0.448 C09 A1JBJ 7 A1JBJ C13 C8 C 0 1 Y N N N N N -21.798 29.787 19.017 -0.752 -3.711 0.305 C13 A1JBJ 8 A1JBJ C14 C9 C 0 1 Y N N N N N -21.515 28.440 19.176 -0.722 -4.448 1.474 C14 A1JBJ 9 A1JBJ C16 C10 C 0 1 Y N N N N N -21.256 28.152 16.912 0.138 -6.281 0.376 C16 A1JBJ 10 A1JBJ C17 C11 C 0 1 Y N N N N N -21.528 29.488 16.671 0.132 -5.609 -0.832 C17 A1JBJ 11 A1JBJ C18 C12 C 0 1 Y N N N N N -21.804 30.330 17.740 -0.320 -4.299 -0.875 C18 A1JBJ 12 A1JBJ C19 C13 C 0 1 Y N N N N N -25.446 28.874 16.529 -2.643 2.481 0.388 C19 A1JBJ 13 A1JBJ C20 C14 C 0 1 Y N N N N N -25.563 27.524 16.796 -1.270 2.436 0.619 C20 A1JBJ 14 A1JBJ C21 C15 C 0 1 Y N N N N N -25.415 26.571 15.787 -0.567 3.614 0.821 C21 A1JBJ 15 A1JBJ C22 C16 C 0 1 Y N N N N N -25.147 26.970 14.501 -1.231 4.834 0.792 C22 A1JBJ 16 A1JBJ C23 C17 C 0 1 Y N N N N N -25.014 28.327 14.226 -2.594 4.878 0.562 C23 A1JBJ 17 A1JBJ C24 C18 C 0 1 Y N N N N N -25.156 29.279 15.234 -3.301 3.711 0.355 C24 A1JBJ 18 A1JBJ C26 C19 C 0 1 N N N N N N -26.564 24.200 15.781 1.591 2.729 0.350 C26 A1JBJ 19 A1JBJ C29 C20 C 0 1 Y N N N N N -28.010 25.350 13.865 3.731 1.822 -0.152 C29 A1JBJ 20 A1JBJ C30 C21 C 0 1 Y N N N N N -27.741 25.110 12.510 3.608 1.867 -1.534 C30 A1JBJ 21 A1JBJ C31 C22 C 0 1 Y N N N N N -28.068 26.030 11.528 4.433 1.092 -2.325 C31 A1JBJ 22 A1JBJ C32 C23 C 0 1 Y N N N N N -28.681 27.209 11.897 5.380 0.271 -1.742 C32 A1JBJ 23 A1JBJ C33 C24 C 0 1 Y N N N N N -28.957 27.452 13.227 5.506 0.223 -0.366 C33 A1JBJ 24 A1JBJ C34 C25 C 0 1 Y N N N N N -28.634 26.530 14.220 4.689 1.000 0.431 C34 A1JBJ 25 A1JBJ C35 C26 C 0 1 N N N N N N -29.638 28.766 13.551 6.540 -0.674 0.265 C35 A1JBJ 26 A1JBJ F36 F1 F 0 1 N N N N N N -30.542 29.045 12.573 7.243 -1.351 -0.737 F36 A1JBJ 27 A1JBJ F37 F2 F 0 1 N N N N N N -28.716 29.772 13.597 7.430 0.099 1.019 F37 A1JBJ 28 A1JBJ F38 F3 F 0 1 N N N N N N -30.272 28.668 14.753 5.906 -1.601 1.099 F38 A1JBJ 29 A1JBJ N02 N1 N 0 1 Y N N N N N -27.723 32.381 19.312 -6.738 -0.057 -0.498 N02 A1JBJ 30 A1JBJ N04 N2 N 0 1 Y N N N N N -26.668 30.628 17.850 -4.704 1.299 -0.052 N04 A1JBJ 31 A1JBJ N06 N3 N 0 1 Y N N N N N -24.608 29.891 18.579 -2.749 0.068 0.208 N06 A1JBJ 32 A1JBJ N10 N4 N 0 1 Y N N N N N -27.329 32.995 20.447 -6.904 -1.443 -0.613 N10 A1JBJ 33 A1JBJ N11 N5 N 0 1 N N N N N N -23.517 30.729 20.591 -2.697 -2.281 0.068 N11 A1JBJ 34 A1JBJ N15 N6 N 0 1 Y N N N N N -21.256 27.667 18.137 -0.285 -5.692 1.477 N15 A1JBJ 35 A1JBJ N25 N7 N 0 1 N N N N N N -25.570 25.187 16.221 0.812 3.574 1.054 N25 A1JBJ 36 A1JBJ N28 N8 N 0 1 N N N N N N -27.637 24.273 14.778 2.898 2.606 0.653 N28 A1JBJ 37 A1JBJ S27 S1 S 0 1 N N N N N N -26.454 22.798 16.537 0.919 1.812 -0.930 S27 A1JBJ 38 A1JBJ H121 H1 H 0 0 N N N N N N -21.775 31.701 19.983 -1.044 -1.835 1.279 H121 A1JBJ 39 A1JBJ H122 H2 H 0 0 N N N N N N -21.536 30.301 21.082 -0.749 -1.724 -0.473 H122 A1JBJ 40 A1JBJ H013 H3 H 0 0 N N N N N N -29.534 33.416 19.181 -7.883 1.260 -1.661 H013 A1JBJ 41 A1JBJ H012 H4 H 0 0 N N N N N N -28.765 33.004 17.611 -8.744 0.520 -0.290 H012 A1JBJ 42 A1JBJ H011 H5 H 0 0 N N N N N N -29.567 31.723 18.582 -7.553 1.811 -0.001 H011 A1JBJ 43 A1JBJ H091 H6 H 0 0 N N N N N N -25.570 32.811 21.655 -5.588 -3.104 -0.485 H091 A1JBJ 44 A1JBJ H141 H7 H 0 0 N N N N N N -21.506 28.014 20.168 -1.061 -3.999 2.396 H141 A1JBJ 45 A1JBJ H161 H8 H 0 0 N N N N N N -21.040 27.496 16.082 0.488 -7.301 0.417 H161 A1JBJ 46 A1JBJ H171 H9 H 0 0 N N N N N N -21.526 29.871 15.661 0.480 -6.097 -1.731 H171 A1JBJ 47 A1JBJ H181 H10 H 0 0 N N N N N N -22.017 31.377 17.582 -0.336 -3.750 -1.804 H181 A1JBJ 48 A1JBJ H201 H11 H 0 0 N N N N N N -25.773 27.200 17.805 -0.756 1.487 0.642 H201 A1JBJ 49 A1JBJ H221 H12 H 0 0 N N N N N N -25.041 26.239 13.713 -0.682 5.750 0.950 H221 A1JBJ 50 A1JBJ H231 H13 H 0 0 N N N N N N -24.798 28.647 13.218 -3.106 5.828 0.541 H231 A1JBJ 51 A1JBJ H241 H14 H 0 0 N N N N N N -25.041 30.329 15.008 -4.364 3.749 0.171 H241 A1JBJ 52 A1JBJ H301 H15 H 0 0 N N N N N N -27.266 24.183 12.225 2.867 2.507 -1.990 H301 A1JBJ 53 A1JBJ H311 H16 H 0 0 N N N N N N -27.847 25.828 10.490 4.337 1.126 -3.401 H311 A1JBJ 54 A1JBJ H321 H17 H 0 0 N N N N N N -28.944 27.940 11.147 6.024 -0.335 -2.363 H321 A1JBJ 55 A1JBJ H341 H18 H 0 0 N N N N N N -28.868 26.735 15.254 4.790 0.966 1.505 H341 A1JBJ 56 A1JBJ H111 H19 H 0 0 N N N N N N -23.630 31.575 21.111 -3.172 -3.116 -0.065 H111 A1JBJ 57 A1JBJ H251 H20 H 0 0 N N N N N N -24.915 24.870 16.907 1.208 4.154 1.724 H251 A1JBJ 58 A1JBJ H281 H21 H 0 0 N N N N N N -28.203 23.452 14.710 3.261 3.061 1.428 H281 A1JBJ 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JBJ N02 C01 SING N N 1 A1JBJ C03 N02 SING Y N 2 A1JBJ N04 C03 SING Y N 3 A1JBJ C05 N04 DOUB Y N 4 A1JBJ C07 N06 DOUB Y N 5 A1JBJ C09 C08 SING Y N 6 A1JBJ N10 C09 DOUB Y N 7 A1JBJ C08 C07 SING Y N 8 A1JBJ N11 C07 SING N N 9 A1JBJ C12 N11 SING N N 10 A1JBJ C13 C12 SING N N 11 A1JBJ C14 C13 DOUB Y N 12 A1JBJ N15 C14 SING Y N 13 A1JBJ C16 N15 DOUB Y N 14 A1JBJ C17 C16 SING Y N 15 A1JBJ C18 C17 DOUB Y N 16 A1JBJ N06 C05 SING Y N 17 A1JBJ C19 C05 SING N N 18 A1JBJ C20 C19 DOUB Y N 19 A1JBJ C21 C20 SING Y N 20 A1JBJ C23 C22 SING Y N 21 A1JBJ C24 C23 DOUB Y N 22 A1JBJ C22 C21 DOUB Y N 23 A1JBJ N25 C21 SING N N 24 A1JBJ C26 N25 SING N N 25 A1JBJ S27 C26 DOUB N N 26 A1JBJ N28 C26 SING N N 27 A1JBJ C29 N28 SING N N 28 A1JBJ C30 C29 DOUB Y N 29 A1JBJ C31 C30 SING Y N 30 A1JBJ C32 C31 DOUB Y N 31 A1JBJ C33 C32 SING Y N 32 A1JBJ C34 C33 DOUB Y N 33 A1JBJ C35 C33 SING N N 34 A1JBJ F36 C35 SING N N 35 A1JBJ F37 C35 SING N N 36 A1JBJ F38 C35 SING N N 37 A1JBJ N02 N10 SING Y N 38 A1JBJ C03 C08 DOUB Y N 39 A1JBJ C13 C18 SING Y N 40 A1JBJ C19 C24 SING Y N 41 A1JBJ C29 C34 SING Y N 42 A1JBJ C12 H121 SING N N 43 A1JBJ C12 H122 SING N N 44 A1JBJ C01 H013 SING N N 45 A1JBJ C01 H012 SING N N 46 A1JBJ C01 H011 SING N N 47 A1JBJ C09 H091 SING N N 48 A1JBJ C14 H141 SING N N 49 A1JBJ C16 H161 SING N N 50 A1JBJ C17 H171 SING N N 51 A1JBJ C18 H181 SING N N 52 A1JBJ C20 H201 SING N N 53 A1JBJ C22 H221 SING N N 54 A1JBJ C23 H231 SING N N 55 A1JBJ C24 H241 SING N N 56 A1JBJ C30 H301 SING N N 57 A1JBJ C31 H311 SING N N 58 A1JBJ C32 H321 SING N N 59 A1JBJ C34 H341 SING N N 60 A1JBJ N11 H111 SING N N 61 A1JBJ N25 H251 SING N N 62 A1JBJ N28 H281 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JBJ InChI InChI 1.06 "InChI=1S/C26H21F3N8S/c1-37-24-21(15-32-37)23(31-14-16-5-4-10-30-13-16)35-22(36-24)17-6-2-8-19(11-17)33-25(38)34-20-9-3-7-18(12-20)26(27,28)29/h2-13,15H,14H2,1H3,(H,31,35,36)(H2,33,34,38)" A1JBJ InChIKey InChI 1.06 UPEIYMKISINCQK-UHFFFAOYSA-N A1JBJ SMILES_CANONICAL CACTVS 3.385 "Cn1ncc2c(NCc3cccnc3)nc(nc12)c4cccc(NC(=S)Nc5cccc(c5)C(F)(F)F)c4" A1JBJ SMILES CACTVS 3.385 "Cn1ncc2c(NCc3cccnc3)nc(nc12)c4cccc(NC(=S)Nc5cccc(c5)C(F)(F)F)c4" A1JBJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1c2c(cn1)c(nc(n2)c3cccc(c3)NC(=S)Nc4cccc(c4)C(F)(F)F)NCc5cccnc5" A1JBJ SMILES "OpenEye OEToolkits" 2.0.7 "Cn1c2c(cn1)c(nc(n2)c3cccc(c3)NC(=S)Nc4cccc(c4)C(F)(F)F)NCc5cccnc5" # _pdbx_chem_comp_identifier.comp_id A1JBJ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[3-[1-methyl-4-(pyridin-3-ylmethylamino)pyrazolo[3,4-d]pyrimidin-6-yl]phenyl]-3-[3-(trifluoromethyl)phenyl]thiourea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JBJ "Create component" 2025-04-28 PDBE A1JBJ "Initial release" 2025-09-17 RCSB #