data_A1JBN # _chem_comp.id A1JBN _chem_comp.name "N-(beta-D-glucosyl)nicotinate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H16 N O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "1-[(2R,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]pyridin-1-ium-3-carboxylic acid; 1-beta-D-glucopyranosylpyridinium-3-carboxylate" _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2025-05-01 _chem_comp.pdbx_modified_date 2026-04-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 286.258 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JBN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list "BGC NIO" _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JBN C4 C4 C 0 1 N N R N N N ? ? ? -0.979 -1.317 0.401 C2 BGC 1 A1JBN C5 C5 C 0 1 N N S N N N ? ? ? -2.392 -1.600 -0.118 C3 BGC 2 A1JBN C6 C6 C 0 1 N N S N N N ? ? ? -3.278 -0.380 0.154 C4 BGC 3 A1JBN C2 C2 C 0 1 N N R N N N ? ? ? -2.653 0.852 -0.505 C5 BGC 4 A1JBN C1 C1 C 0 1 N N N N N N ? ? ? -3.500 2.086 -0.187 C6 BGC 5 A1JBN C3 C3 C 0 1 N N R N N N ? ? ? -0.443 -0.049 -0.268 C1 BGC 6 A1JBN O3 O2 O 0 1 N N N N N N ? ? ? -0.126 -2.421 0.088 O2 BGC 7 A1JBN O4 O3 O 0 1 N N N N N N ? ? ? -2.929 -2.741 0.555 O3 BGC 8 A1JBN O5 O4 O 0 1 N N N N N N ? ? ? -4.580 -0.604 -0.390 O4 BGC 9 A1JBN O2 O6 O 0 1 N N N N N N ? ? ? -1.329 1.040 -0.001 O5 BGC 10 A1JBN O1 O1 O 0 1 N N N N N N ? ? ? -2.984 3.214 -0.896 O6 BGC 11 A1JBN N1 N1 N 1 1 Y N N N N N ? ? ? 0.886 0.260 0.266 N NIO 12 A1JBN C11 C11 C 0 1 Y N N N N N ? ? ? 1.950 -0.074 -0.435 C1 NIO 13 A1JBN C10 C10 C 0 1 Y N N N N N ? ? ? 3.231 0.206 0.044 C2 NIO 14 A1JBN C9 C9 C 0 1 Y N N N N N ? ? ? 3.365 0.848 1.282 C3 NIO 15 A1JBN C8 C7 C 0 1 Y N N N N N ? ? ? 2.216 1.178 1.977 C4 NIO 16 A1JBN C7 C8 C 0 1 Y N N N N N ? ? ? 0.982 0.871 1.431 C5 NIO 17 A1JBN C12 C12 C 0 1 N N N N N N ? ? ? 4.425 -0.170 -0.741 C6 NIO 18 A1JBN O7 O7 O 0 1 N N N N N N ? ? ? 4.297 -0.727 -1.812 O1 NIO 19 A1JBN O6 O5 O 0 1 N N N N N N ? ? ? 5.656 0.105 -0.268 O2 NIO 20 A1JBN H6 H5 H 0 1 N N N N N N ? ? ? -1.009 -1.175 1.481 H2 BGC 21 A1JBN H8 H6 H 0 1 N N N N N N ? ? ? -2.355 -1.793 -1.190 H3 BGC 22 A1JBN H10 H7 H 0 1 N N N N N N ? ? ? -3.355 -0.219 1.230 H4 BGC 23 A1JBN H4 H3 H 0 1 N N N N N N ? ? ? -2.614 0.706 -1.584 H5 BGC 24 A1JBN H2 H2 H 0 1 N N N N N N ? ? ? -4.531 1.906 -0.491 H61 BGC 25 A1JBN H3 H1 H 0 1 N N N N N N ? ? ? -3.466 2.283 0.885 H62 BGC 26 A1JBN H5 H4 H 0 1 N N N N N N ? ? ? -0.375 -0.207 -1.344 H1 BGC 27 A1JBN H7 H10 H 0 1 N N N N N N ? ? ? -0.410 -3.259 0.477 HO2 BGC 28 A1JBN H9 H11 H 0 1 N N N N N N ? ? ? -3.824 -2.977 0.275 HO3 BGC 29 A1JBN H11 H12 H 0 1 N N N N N N ? ? ? -5.034 -1.374 -0.020 HO4 BGC 30 A1JBN H1 H9 H 0 1 N N N N N N ? ? ? -3.473 4.033 -0.742 HO6 BGC 31 A1JBN H15 H16 H 0 1 N N N N N N ? ? ? 1.831 -0.569 -1.387 H1 NIO 32 A1JBN H14 H15 H 0 1 N N N N N N ? ? ? 4.341 1.077 1.684 H3 NIO 33 A1JBN H13 H8 H 0 1 N N N N N N ? ? ? 2.281 1.674 2.934 H4 NIO 34 A1JBN H12 H14 H 0 1 N N N N N N ? ? ? 0.083 1.127 1.972 H5 NIO 35 A1JBN H16 H13 H 0 1 N N N N N N ? ? ? 6.406 -0.160 -0.817 HO2 NIO 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JBN O7 C12 DOUB N N 1 A1JBN C9 C8 DOUB Y N 2 A1JBN C9 C10 SING Y N 3 A1JBN C8 C7 SING Y N 4 A1JBN C12 C10 SING N N 5 A1JBN C12 O6 SING N N 6 A1JBN C10 C11 DOUB Y N 7 A1JBN C7 N1 DOUB Y N 8 A1JBN C11 N1 SING Y N 9 A1JBN N1 C3 SING N N 10 A1JBN O3 C4 SING N N 11 A1JBN C3 C4 SING N N 12 A1JBN C3 O2 SING N N 13 A1JBN C4 C5 SING N N 14 A1JBN O2 C2 SING N N 15 A1JBN C5 O4 SING N N 16 A1JBN C5 C6 SING N N 17 A1JBN C6 C2 SING N N 18 A1JBN C6 O5 SING N N 19 A1JBN C2 C1 SING N N 20 A1JBN C1 O1 SING N N 21 A1JBN C1 H3 SING N N 22 A1JBN C1 H2 SING N N 23 A1JBN C2 H4 SING N N 24 A1JBN C3 H5 SING N N 25 A1JBN C4 H6 SING N N 26 A1JBN C5 H8 SING N N 27 A1JBN C6 H10 SING N N 28 A1JBN C8 H13 SING N N 29 A1JBN O1 H1 SING N N 30 A1JBN O3 H7 SING N N 31 A1JBN O4 H9 SING N N 32 A1JBN O5 H11 SING N N 33 A1JBN O6 H16 SING N N 34 A1JBN C7 H12 SING N N 35 A1JBN C9 H14 SING N N 36 A1JBN C11 H15 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JBN InChI InChI 1.06 "InChI=1S/C12H15NO7/c14-5-7-8(15)9(16)10(17)11(20-7)13-3-1-2-6(4-13)12(18)19/h1-4,7-11,14-17H,5H2/p+1/t7-,8-,9+,10-,11-/m1/s1" A1JBN InChIKey InChI 1.06 CRXJVFIHZPTDKA-KAMPLNKDSA-O A1JBN SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H]([C@H](O)[C@@H](O)[C@@H]1O)[n+]2cccc(c2)C(O)=O" A1JBN SMILES CACTVS 3.385 "OC[CH]1O[CH]([CH](O)[CH](O)[CH]1O)[n+]2cccc(c2)C(O)=O" A1JBN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c[n+](c1)[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)C(=O)O" A1JBN SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c[n+](c1)C2C(C(C(C(O2)CO)O)O)O)C(=O)O" # _pdbx_chem_comp_identifier.comp_id A1JBN _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]pyridin-1-ium-3-carboxylic acid" # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 A1JBN "1-[(2R,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]pyridin-1-ium-3-carboxylic acid" PDB ? 2 A1JBN 1-beta-D-glucopyranosylpyridinium-3-carboxylate PUBCHEM ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JBN "Create component" 2025-05-01 PDBE A1JBN "Modify coordinates" 2026-04-14 RCSB A1JBN "Initial release" 2026-04-22 RCSB #