data_A1JBO # _chem_comp.id A1JBO _chem_comp.name "~{N}-[4-[2-[(2~{S},3~{S},4~{S},5~{R},6~{R})-6-[(1~{S})-1,2-bis(oxidanyl)ethyl]-4-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-[(1~{S})-1,2-bis(oxidanyl)ethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,5-bis(oxidanyl)oxan-2-yl]oxyethyl]phenyl]-2,2,2-tris(fluoranyl)ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H34 F3 N O14" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-05-01 _chem_comp.pdbx_modified_date 2026-02-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 617.520 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JBO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9QW3 _chem_comp.pdbx_subcomponent_list "GMH GMH A1JAY" _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JBO C11 C8 C 0 1 N N R N N N 29.909 22.841 -28.387 -4.747 -0.069 -1.459 C1 GMH 1 A1JBO C21 C9 C 0 1 N N S N N N 30.120 24.366 -28.275 -6.230 0.123 -1.788 C2 GMH 2 A1JBO C31 C12 C 0 1 N N S N N N 29.385 25.084 -29.383 -7.042 0.090 -0.490 C3 GMH 3 A1JBO C41 C13 C 0 1 N N S N N N 29.803 24.533 -30.711 -6.773 -1.232 0.235 C4 GMH 4 A1JBO C51 C14 C 0 1 N N R N N N 29.661 23.021 -30.765 -5.269 -1.371 0.485 C5 GMH 5 A1JBO C61 C15 C 0 1 N N S N N N 30.207 22.620 -32.147 -4.986 -2.718 1.155 C6 GMH 6 A1JBO C71 C16 C 0 1 N N N N N N 29.281 21.596 -32.836 -3.475 -2.911 1.292 C7 GMH 7 A1JBO O21 O8 O 0 1 N N N N N N 31.499 24.755 -28.412 -6.667 -0.928 -2.652 O2 GMH 8 A1JBO O31 O9 O 0 1 N N N N N N 29.723 26.478 -29.397 -8.434 0.197 -0.793 O3 GMH 9 A1JBO O41 O10 O 0 1 N N N N N N 28.962 25.089 -31.729 -7.470 -1.244 1.482 O4 GMH 10 A1JBO O51 O11 O 0 1 N N N N N N 30.342 22.364 -29.661 -4.572 -1.302 -0.760 O5 GMH 11 A1JBO O61 O12 O 0 1 N N N N N N 31.573 22.176 -31.981 -5.530 -3.770 0.356 O6 GMH 12 A1JBO O71 O13 O 0 1 N N N N N N 28.877 20.518 -31.950 -3.212 -4.112 2.021 O7 GMH 13 A1JBO C1 C1 C 0 1 N N S N N N 26.654 19.417 -28.105 -0.987 0.350 1.005 C1 GMH 14 A1JBO C2 C2 C 0 1 N N S N N N 27.193 20.689 -28.696 -2.496 0.234 0.775 C2 GMH 15 A1JBO C3 C3 C 0 1 N N S N N N 28.096 21.397 -27.706 -2.881 1.055 -0.460 C3 GMH 16 A1JBO C4 C4 C 0 1 N N R N N N 27.363 21.614 -26.361 -2.433 2.505 -0.255 C4 GMH 17 A1JBO C5 C5 C 0 1 N N R N N N 26.831 20.288 -25.869 -0.927 2.533 0.015 C5 GMH 18 A1JBO C6 C11 C 0 1 N N S N N N 25.991 20.475 -24.590 -0.482 3.973 0.280 C6 GMH 19 A1JBO C7 C6 C 0 1 N N N N N N 25.546 19.113 -24.070 0.996 3.986 0.673 C7 GMH 20 A1JBO O2 O3 O 0 1 N N N N N N 26.093 21.570 -29.030 -3.194 0.735 1.917 O2 GMH 21 A1JBO O3 O4 O 0 1 N N N N N N 28.468 22.679 -28.250 -4.298 1.012 -0.640 O3 GMH 22 A1JBO O4 O5 O 0 1 N N N N N N 28.247 22.116 -25.364 -2.722 3.265 -1.431 O4 GMH 23 A1JBO O5 O6 O 0 1 N N N N N N 26.019 19.698 -26.854 -0.634 1.726 1.158 O5 GMH 24 A1JBO O6 O1 O 0 1 N N N N N N 24.827 21.270 -24.828 -1.262 4.524 1.344 O6 GMH 25 A1JBO O7 O7 O 0 1 N N N N N N 24.603 19.284 -23.010 1.441 5.338 0.807 O7 GMH 26 A1JBO O11 O14 O 0 1 N N N N N N 34.403 14.174 -27.805 7.552 0.607 0.214 O1 A1JAY 27 A1JBO C12 C17 C 0 1 N N N N N N 34.578 15.222 -28.400 8.085 -0.459 -0.009 C1 A1JAY 28 A1JBO N1 N1 N 0 1 N N N N N N 33.677 16.170 -28.691 7.338 -1.528 -0.348 N1 A1JAY 29 A1JBO C22 C10 C 0 1 Y N N N N N 32.373 16.310 -28.156 5.961 -1.384 -0.550 C2 A1JAY 30 A1JBO C32 C18 C 0 1 Y N N N N N 31.992 17.475 -27.497 5.097 -2.419 -0.219 C3 A1JAY 31 A1JBO C42 C19 C 0 1 Y N N N N N 30.705 17.597 -26.997 3.738 -2.273 -0.419 C4 A1JAY 32 A1JBO C52 C20 C 0 1 Y N N N N N 29.784 16.570 -27.139 3.238 -1.098 -0.949 C5 A1JAY 33 A1JBO C62 C21 C 0 1 N N N N N N 28.390 16.695 -26.595 1.755 -0.942 -1.166 C6 A1JAY 34 A1JBO C72 C22 C 0 1 N N N N N N 27.406 17.241 -27.602 1.116 -0.348 0.091 C7 A1JAY 35 A1JBO O1 O2 O 0 1 N N N N N N 27.754 18.597 -27.874 -0.291 -0.200 -0.115 O2 A1JAY 36 A1JBO C8 C23 C 0 1 Y N N N N N 30.181 15.412 -27.798 4.096 -0.065 -1.280 C8 A1JAY 37 A1JBO C9 C7 C 0 1 Y N N N N N 31.461 15.278 -28.306 5.456 -0.205 -1.082 C9 A1JAY 38 A1JBO C10 C24 C 0 1 N N N N N N 36.007 15.572 -28.839 9.583 -0.588 0.093 C10 A1JAY 39 A1JBO F1 F1 F 0 1 N N N N N N 36.543 16.460 -27.994 9.904 -1.546 1.061 F1 A1JAY 40 A1JBO F2 F2 F 0 1 N N N N N N 36.067 16.088 -30.068 10.102 -0.985 -1.145 F2 A1JAY 41 A1JBO F3 F3 F 0 1 N N N N N N 36.780 14.491 -28.835 10.134 0.645 0.456 F3 A1JAY 42 A1JBO H10 H10 H 0 1 N N N N N N 30.440 22.333 -27.568 -4.170 -0.089 -2.383 H1 GMH 43 A1JBO H11 H11 H 0 1 N N N N N N 29.727 24.705 -27.305 -6.373 1.084 -2.283 H2 GMH 44 A1JBO H16 H16 H 0 1 N N N N N N 28.301 24.950 -29.251 -6.743 0.923 0.148 H3 GMH 45 A1JBO H17 H17 H 0 1 N N N N N N 30.853 24.800 -30.900 -7.118 -2.062 -0.383 H4 GMH 46 A1JBO H18 H18 H 0 1 N N N N N N 28.590 22.771 -30.733 -4.933 -0.564 1.136 H5 GMH 47 A1JBO H19 H19 H 0 1 N N N N N N 30.211 23.526 -32.771 -5.446 -2.736 2.143 H6 GMH 48 A1JBO H20 H20 H 0 1 N N N N N N 28.379 22.118 -33.188 -3.026 -2.981 0.302 H71 GMH 49 A1JBO H21 H21 H 0 1 N N N N N N 29.813 21.163 -33.696 -3.047 -2.062 1.826 H72 GMH 50 A1JBO H22 H22 H 0 1 N N N N N N 32.016 24.332 -27.737 -6.192 -0.969 -3.493 HO2 GMH 51 A1JBO H23 H23 H 0 1 N N N N N N 29.475 26.873 -28.569 -8.674 1.010 -1.258 HO3 GMH 52 A1JBO H24 H24 H 0 1 N N N N N N 29.033 26.036 -31.716 -8.429 -1.155 1.398 HO4 GMH 53 A1JBO H25 H25 H 0 1 N N N N N N 32.078 22.857 -31.552 -5.166 -3.814 -0.538 HO6 GMH 54 A1JBO H26 H26 H 0 1 N N N N N N 28.310 19.917 -32.420 -2.272 -4.299 2.146 HO7 GMH 55 A1JBO H1 H1 H 0 1 N N N N N N 25.946 18.952 -28.807 -0.714 -0.198 1.908 H1 GMH 56 A1JBO H2 H2 H 0 1 N N N N N N 27.771 20.451 -29.601 -2.761 -0.811 0.615 H2 GMH 57 A1JBO H3 H3 H 0 1 N N N N N N 28.991 20.783 -27.528 -2.388 0.642 -1.340 H3 GMH 58 A1JBO H4 H4 H 0 1 N N N N N N 26.524 22.308 -26.520 -2.964 2.933 0.596 H4 GMH 59 A1JBO H5 H5 H 0 1 N N N N N N 27.681 19.631 -25.633 -0.395 2.142 -0.852 H5 GMH 60 A1JBO H12 H12 H 0 1 N N N N N N 26.622 20.954 -23.827 -0.625 4.569 -0.621 H6 GMH 61 A1JBO H7 H7 H 0 1 N N N N N N 25.078 18.545 -24.887 1.125 3.465 1.621 H71 GMH 62 A1JBO H8 H8 H 0 1 N N N N N N 26.421 18.562 -23.695 1.581 3.486 -0.099 H72 GMH 63 A1JBO H13 H13 H 0 1 N N N N N N 26.433 22.374 -29.404 -2.994 0.264 2.738 HO2 GMH 64 A1JBO H14 H14 H 0 1 N N N N N N 27.771 22.239 -24.551 -2.464 4.195 -1.371 HO4 GMH 65 A1JBO H6 H6 H 0 1 N N N N N N 24.336 21.363 -24.020 -1.184 4.043 2.179 HO6 GMH 66 A1JBO H15 H15 H 0 1 N N N N N N 24.329 18.433 -22.689 2.372 5.422 1.055 HO7 GMH 67 A1JBO H27 H27 H 0 1 N N N N N N 33.957 16.857 -29.362 7.755 -2.398 -0.451 H1 A1JAY 68 A1JBO H28 H28 H 0 1 N N N N N N 32.698 18.283 -27.375 5.487 -3.338 0.195 H2 A1JAY 69 A1JBO H29 H29 H 0 1 N N N N N N 30.415 18.505 -26.489 3.066 -3.078 -0.162 H3 A1JAY 70 A1JBO H30 H30 H 0 1 N N N N N N 28.413 17.370 -25.727 1.580 -0.277 -2.011 H4 A1JAY 71 A1JBO H31 H31 H 0 1 N N N N N N 28.048 15.699 -26.277 1.314 -1.917 -1.372 H5 A1JAY 72 A1JBO H32 H32 H 0 1 N N N N N N 26.387 17.193 -27.191 1.557 0.627 0.297 H6 A1JAY 73 A1JBO H33 H33 H 0 1 N N N N N N 27.455 16.651 -28.529 1.291 -1.013 0.937 H7 A1JAY 74 A1JBO H34 H34 H 0 1 N N N N N N 29.477 14.602 -27.916 3.703 0.852 -1.693 H9 A1JAY 75 A1JBO H9 H9 H 0 1 N N N N N N 31.748 14.372 -28.818 6.125 0.604 -1.336 H10 A1JAY 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JBO C71 C61 SING N N 1 A1JBO C71 O71 SING N N 2 A1JBO C61 O61 SING N N 3 A1JBO C61 C51 SING N N 4 A1JBO O41 C41 SING N N 5 A1JBO C51 C41 SING N N 6 A1JBO C51 O51 SING N N 7 A1JBO C41 C31 SING N N 8 A1JBO F2 C10 SING N N 9 A1JBO O51 C11 SING N N 10 A1JBO O31 C31 SING N N 11 A1JBO C31 C21 SING N N 12 A1JBO O2 C2 SING N N 13 A1JBO C10 F3 SING N N 14 A1JBO C10 C12 SING N N 15 A1JBO C10 F1 SING N N 16 A1JBO C2 C1 SING N N 17 A1JBO C2 C3 SING N N 18 A1JBO N1 C12 SING N N 19 A1JBO N1 C22 SING N N 20 A1JBO O21 C21 SING N N 21 A1JBO C12 O11 DOUB N N 22 A1JBO C11 C21 SING N N 23 A1JBO C11 O3 SING N N 24 A1JBO C9 C22 DOUB Y N 25 A1JBO C9 C8 SING Y N 26 A1JBO O3 C3 SING N N 27 A1JBO C22 C32 SING Y N 28 A1JBO C1 O1 SING N N 29 A1JBO C1 O5 SING N N 30 A1JBO O1 C72 SING N N 31 A1JBO C8 C52 DOUB Y N 32 A1JBO C3 C4 SING N N 33 A1JBO C72 C62 SING N N 34 A1JBO C32 C42 DOUB Y N 35 A1JBO C52 C42 SING Y N 36 A1JBO C52 C62 SING N N 37 A1JBO O5 C5 SING N N 38 A1JBO C4 C5 SING N N 39 A1JBO C4 O4 SING N N 40 A1JBO C5 C6 SING N N 41 A1JBO O6 C6 SING N N 42 A1JBO C6 C7 SING N N 43 A1JBO C7 O7 SING N N 44 A1JBO C1 H1 SING N N 45 A1JBO C2 H2 SING N N 46 A1JBO C3 H3 SING N N 47 A1JBO C4 H4 SING N N 48 A1JBO C5 H5 SING N N 49 A1JBO O6 H6 SING N N 50 A1JBO C7 H7 SING N N 51 A1JBO C7 H8 SING N N 52 A1JBO C9 H9 SING N N 53 A1JBO C11 H10 SING N N 54 A1JBO C21 H11 SING N N 55 A1JBO C6 H12 SING N N 56 A1JBO O2 H13 SING N N 57 A1JBO O4 H14 SING N N 58 A1JBO O7 H15 SING N N 59 A1JBO C31 H16 SING N N 60 A1JBO C41 H17 SING N N 61 A1JBO C51 H18 SING N N 62 A1JBO C61 H19 SING N N 63 A1JBO C71 H20 SING N N 64 A1JBO C71 H21 SING N N 65 A1JBO O21 H22 SING N N 66 A1JBO O31 H23 SING N N 67 A1JBO O41 H24 SING N N 68 A1JBO O61 H25 SING N N 69 A1JBO O71 H26 SING N N 70 A1JBO N1 H27 SING N N 71 A1JBO C32 H28 SING N N 72 A1JBO C42 H29 SING N N 73 A1JBO C62 H30 SING N N 74 A1JBO C62 H31 SING N N 75 A1JBO C72 H32 SING N N 76 A1JBO C72 H33 SING N N 77 A1JBO C8 H34 SING N N 78 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JBO InChI InChI 1.06 "InChI=1S/C24H34F3NO14/c25-24(26,27)23(38)28-10-3-1-9(2-4-10)5-6-39-21-17(37)20(16(36)19(40-21)12(32)8-30)42-22-15(35)13(33)14(34)18(41-22)11(31)7-29/h1-4,11-22,29-37H,5-8H2,(H,28,38)/t11-,12-,13-,14-,15-,16+,17-,18+,19+,20-,21-,22+/m0/s1" A1JBO InChIKey InChI 1.06 IKWNTJVXRGBHBU-KSXAYDKWSA-N A1JBO SMILES_CANONICAL CACTVS 3.385 "OC[C@H](O)[C@H]1O[C@H](O[C@@H]2[C@H](O)[C@@H](OCCc3ccc(NC(=O)C(F)(F)F)cc3)O[C@H]([C@@H](O)CO)[C@H]2O)[C@@H](O)[C@@H](O)[C@@H]1O" A1JBO SMILES CACTVS 3.385 "OC[CH](O)[CH]1O[CH](O[CH]2[CH](O)[CH](OCCc3ccc(NC(=O)C(F)(F)F)cc3)O[CH]([CH](O)CO)[CH]2O)[CH](O)[CH](O)[CH]1O" A1JBO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CCO[C@@H]2[C@H]([C@H]([C@@H]([C@H](O2)[C@H](CO)O)O)O[C@@H]3[C@H]([C@H]([C@@H]([C@H](O3)[C@H](CO)O)O)O)O)O)NC(=O)C(F)(F)F" A1JBO SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CCOC2C(C(C(C(O2)C(CO)O)O)OC3C(C(C(C(O3)C(CO)O)O)O)O)O)NC(=O)C(F)(F)F" # _pdbx_chem_comp_identifier.comp_id A1JBO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[4-[2-[(2~{S},3~{S},4~{S},5~{R},6~{R})-6-[(1~{S})-1,2-bis(oxidanyl)ethyl]-4-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-[(1~{S})-1,2-bis(oxidanyl)ethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,5-bis(oxidanyl)oxan-2-yl]oxyethyl]phenyl]-2,2,2-tris(fluoranyl)ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JBO "Create component" 2025-05-01 PDBE A1JBO "Initial release" 2026-03-04 RCSB #