data_A1JCF # _chem_comp.id A1JCF _chem_comp.name "[[(2~{R},3~{S},4~{R},5~{R})-5-[5-chloranyl-7-[[(1~{S})-1~{H}-inden-1-yl]-methyl-amino]-[1,2,3]triazolo[4,5-d]pyrimidin-3-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]methylphosphonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H23 Cl N6 O9 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-05-07 _chem_comp.pdbx_modified_date 2025-11-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 588.832 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JCF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9R0D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JCF C1 C1 C 0 1 N N N N N N -77.958 21.315 -30.330 4.650 0.891 1.934 C1 A1JCF 1 A1JCF C3 C2 C 0 1 N N S N N N -79.932 22.884 -30.633 6.055 0.716 -0.031 C3 A1JCF 2 A1JCF C5 C3 C 0 1 N N N N N N -79.671 23.494 -32.039 6.075 0.809 -1.538 C5 A1JCF 3 A1JCF C6 C4 C 0 1 N N N N N N -80.298 22.503 -33.064 6.796 1.864 -1.878 C6 A1JCF 4 A1JCF C7 C5 C 0 1 Y N N N N N -80.968 21.411 -32.250 7.313 2.559 -0.685 C7 A1JCF 5 A1JCF C8 C6 C 0 1 Y N N N N N -81.716 20.316 -32.679 8.108 3.699 -0.540 C8 A1JCF 6 A1JCF C11 C7 C 0 1 Y N N N N N -81.334 20.732 -29.971 7.228 2.331 1.710 C11 A1JCF 7 A1JCF C12 C8 C 0 1 Y N N N N N -80.777 21.627 -30.887 6.879 1.882 0.458 C12 A1JCF 8 A1JCF C15 C9 C 0 1 Y N N N N N -76.244 23.773 -27.529 3.687 -2.164 -1.228 C15 A1JCF 9 A1JCF C17 C10 C 0 1 Y N N N N N -77.995 25.204 -27.309 1.804 -1.408 -0.147 C17 A1JCF 10 A1JCF C21 C11 C 0 1 Y N N N N N -78.694 24.500 -28.311 2.540 -0.322 0.360 C21 A1JCF 11 A1JCF C27 C12 C 0 1 N N N N N N -81.466 29.051 -25.302 -4.061 -1.496 0.838 C27 A1JCF 12 A1JCF O28 O1 O 0 1 N N N N N N -81.955 28.737 -23.995 -4.608 -0.567 -0.101 O28 A1JCF 13 A1JCF C32 C13 C 0 1 N N N N N N -84.574 29.243 -24.087 -6.133 1.539 -1.154 C32 A1JCF 14 A1JCF C37 C14 C 0 1 N N S N N N -79.302 29.383 -26.583 -2.402 -3.359 1.143 C37 A1JCF 15 A1JCF C40 C15 C 0 1 N N R N N N -78.019 28.523 -26.586 -0.904 -3.019 1.336 C40 A1JCF 16 A1JCF O42 O2 O 0 1 N N N N N N -76.949 29.119 -25.838 -0.107 -4.205 1.333 O42 A1JCF 17 A1JCF N2 N1 N 0 1 N N N N N N -78.642 22.587 -29.942 4.677 0.823 0.467 N2 A1JCF 18 A1JCF C9 C16 C 0 1 Y N N N N N -82.258 19.429 -31.756 8.452 4.141 0.720 C9 A1JCF 19 A1JCF C10 C17 C 0 1 Y N N N N N -82.069 19.640 -30.397 8.015 3.463 1.843 C10 A1JCF 20 A1JCF C13 C18 C 0 1 Y N N N N N -78.076 23.376 -28.919 3.901 -0.223 0.005 C13 A1JCF 21 A1JCF N14 N2 N 0 1 Y N N N N N -76.851 23.088 -28.472 4.420 -1.158 -0.781 N14 A1JCF 22 A1JCF N16 N3 N 0 1 Y N N N N N -76.794 24.819 -26.948 2.412 -2.295 -0.929 N16 A1JCF 23 A1JCF N18 N4 N 0 1 Y N N N N N -78.795 26.211 -26.899 0.534 -1.262 0.338 N18 A1JCF 24 A1JCF N19 N5 N 0 1 Y N N N N N -79.960 26.128 -27.653 0.534 -0.098 1.121 N19 A1JCF 25 A1JCF N20 N6 N 0 1 Y N N N N N -79.867 25.130 -28.451 1.712 0.422 1.113 N20 A1JCF 26 A1JCF C22 C19 C 0 1 N N R N N N -78.465 27.208 -25.898 -0.605 -2.149 0.088 C22 A1JCF 27 A1JCF O24 O3 O 0 1 N N N N N N -79.617 27.540 -25.101 -1.817 -1.383 -0.087 O24 A1JCF 28 A1JCF C25 C20 C 0 1 N N R N N N -79.942 28.945 -25.252 -2.916 -2.270 0.182 C25 A1JCF 29 A1JCF P29 P1 P 0 1 N N N N N N -83.048 29.577 -23.179 -5.832 0.417 0.251 P29 A1JCF 30 A1JCF O30 O4 O 0 1 N N N N N N -82.737 31.030 -23.207 -5.497 1.211 1.454 O30 A1JCF 31 A1JCF O31 O5 O 0 1 N N N N N N -82.995 29.109 -21.635 -7.156 -0.454 0.535 O31 A1JCF 32 A1JCF P33 P2 P 0 1 N N N N N N -84.898 27.454 -24.084 -7.520 2.653 -0.756 P33 A1JCF 33 A1JCF O34 O6 O 0 1 N N N N N N -85.932 27.262 -25.115 -7.184 3.448 0.447 O34 A1JCF 34 A1JCF O35 O7 O 0 1 N N N N N N -83.687 26.507 -24.556 -7.785 3.644 -1.996 O35 A1JCF 35 A1JCF O36 O8 O 0 1 N N N N N N -85.286 27.243 -22.578 -8.844 1.782 -0.471 O36 A1JCF 36 A1JCF O39 O9 O 0 1 N N N N N N -79.000 30.780 -26.595 -2.552 -4.654 0.557 O39 A1JCF 37 A1JCF CL43 CL1 CL 0 0 N N N N N N -74.652 23.315 -27.035 4.432 -3.350 -2.253 CL43 A1JCF 38 A1JCF H1 H1 H 0 1 N N N N N N -77.025 21.210 -29.756 5.211 1.764 2.267 H1 A1JCF 39 A1JCF H2 H2 H 0 1 N N N N N N -78.619 20.463 -30.114 3.618 0.970 2.275 H2 A1JCF 40 A1JCF H3 H3 H 0 1 N N N N N N -77.727 21.337 -31.405 5.102 -0.011 2.348 H3 A1JCF 41 A1JCF H4 H4 H 0 1 N N N N N N -80.518 23.599 -30.036 6.501 -0.224 0.295 H4 A1JCF 42 A1JCF H5 H5 H 0 1 N N N N N N -79.158 24.418 -32.260 5.586 0.131 -2.221 H5 A1JCF 43 A1JCF H6 H6 H 0 1 N N N N N N -80.263 22.578 -34.141 6.982 2.175 -2.895 H6 A1JCF 44 A1JCF H7 H7 H 0 1 N N N N N N -81.876 20.156 -33.735 8.452 4.233 -1.414 H7 A1JCF 45 A1JCF H8 H8 H 0 1 N N N N N N -81.189 20.895 -28.913 6.888 1.802 2.589 H8 A1JCF 46 A1JCF H9 H9 H 0 1 N N N N N N -81.764 30.073 -25.580 -3.684 -0.955 1.706 H9 A1JCF 47 A1JCF H10 H10 H 0 1 N N N N N N -81.869 28.338 -26.037 -4.837 -2.193 1.154 H10 A1JCF 48 A1JCF H11 H11 H 0 1 N N N N N N -84.469 29.595 -25.124 -5.237 2.128 -1.346 H11 A1JCF 49 A1JCF H12 H12 H 0 1 N N N N N N -85.411 29.769 -23.604 -6.380 0.954 -2.040 H12 A1JCF 50 A1JCF H13 H13 H 0 1 N N N N N N -79.949 29.098 -27.426 -2.930 -3.309 2.095 H13 A1JCF 51 A1JCF H14 H14 H 0 1 N N N N N N -77.714 28.314 -27.622 -0.750 -2.450 2.253 H14 A1JCF 52 A1JCF H15 H15 H 0 1 N N N N N N -76.186 28.554 -25.871 -0.320 -4.824 2.045 H15 A1JCF 53 A1JCF H16 H16 H 0 1 N N N N N N -82.826 18.576 -32.096 9.067 5.023 0.830 H16 A1JCF 54 A1JCF H17 H17 H 0 1 N N N N N N -82.493 18.956 -29.677 8.288 3.815 2.827 H17 A1JCF 55 A1JCF H18 H18 H 0 1 N N N N N N -77.647 26.847 -25.257 -0.417 -2.778 -0.782 H18 A1JCF 56 A1JCF H19 H19 H 0 1 N N N N N N -79.542 29.545 -24.421 -3.262 -2.727 -0.746 H19 A1JCF 57 A1JCF H20 H20 H 0 1 N N N N N N -82.779 29.853 -21.085 -7.436 -1.001 -0.212 H20 A1JCF 58 A1JCF H21 H21 H 0 1 N N N N N N -83.925 26.066 -25.363 -8.511 4.267 -1.854 H21 A1JCF 59 A1JCF H22 H22 H 0 1 N N N N N N -86.203 27.001 -22.518 -9.123 1.236 -1.219 H22 A1JCF 60 A1JCF H23 H23 H 0 1 N N N N N N -79.808 31.279 -26.593 -2.243 -5.378 1.119 H23 A1JCF 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JCF C6 C7 SING N N 1 A1JCF C6 C5 DOUB N N 2 A1JCF C8 C7 DOUB Y N 3 A1JCF C8 C9 SING Y N 4 A1JCF C7 C12 SING Y N 5 A1JCF C5 C3 SING N N 6 A1JCF C9 C10 DOUB Y N 7 A1JCF C12 C3 SING N N 8 A1JCF C12 C11 DOUB Y N 9 A1JCF C3 N2 SING N N 10 A1JCF C10 C11 SING Y N 11 A1JCF C1 N2 SING N N 12 A1JCF N2 C13 SING N N 13 A1JCF C13 N14 DOUB Y N 14 A1JCF C13 C21 SING Y N 15 A1JCF N14 C15 SING Y N 16 A1JCF N20 C21 SING Y N 17 A1JCF N20 N19 DOUB Y N 18 A1JCF C21 C17 DOUB Y N 19 A1JCF N19 N18 SING Y N 20 A1JCF C15 CL43 SING N N 21 A1JCF C15 N16 DOUB Y N 22 A1JCF C17 N16 SING Y N 23 A1JCF C17 N18 SING Y N 24 A1JCF N18 C22 SING N N 25 A1JCF O39 C37 SING N N 26 A1JCF C40 C37 SING N N 27 A1JCF C40 C22 SING N N 28 A1JCF C40 O42 SING N N 29 A1JCF C37 C25 SING N N 30 A1JCF C22 O24 SING N N 31 A1JCF C27 C25 SING N N 32 A1JCF C27 O28 SING N N 33 A1JCF C25 O24 SING N N 34 A1JCF O34 P33 DOUB N N 35 A1JCF O35 P33 SING N N 36 A1JCF C32 P33 SING N N 37 A1JCF C32 P29 SING N N 38 A1JCF P33 O36 SING N N 39 A1JCF O28 P29 SING N N 40 A1JCF O30 P29 DOUB N N 41 A1JCF P29 O31 SING N N 42 A1JCF C1 H1 SING N N 43 A1JCF C1 H2 SING N N 44 A1JCF C1 H3 SING N N 45 A1JCF C3 H4 SING N N 46 A1JCF C5 H5 SING N N 47 A1JCF C6 H6 SING N N 48 A1JCF C8 H7 SING N N 49 A1JCF C11 H8 SING N N 50 A1JCF C27 H9 SING N N 51 A1JCF C27 H10 SING N N 52 A1JCF C32 H11 SING N N 53 A1JCF C32 H12 SING N N 54 A1JCF C37 H13 SING N N 55 A1JCF C40 H14 SING N N 56 A1JCF O42 H15 SING N N 57 A1JCF C9 H16 SING N N 58 A1JCF C10 H17 SING N N 59 A1JCF C22 H18 SING N N 60 A1JCF C25 H19 SING N N 61 A1JCF O31 H20 SING N N 62 A1JCF O35 H21 SING N N 63 A1JCF O36 H22 SING N N 64 A1JCF O39 H23 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JCF InChI InChI 1.06 "InChI=1S/C20H23ClN6O9P2/c1-26(12-7-6-10-4-2-3-5-11(10)12)17-14-18(23-20(21)22-17)27(25-24-14)19-16(29)15(28)13(36-19)8-35-38(33,34)9-37(30,31)32/h2-7,12-13,15-16,19,28-29H,8-9H2,1H3,(H,33,34)(H2,30,31,32)/t12-,13+,15+,16+,19+/m0/s1" A1JCF InChIKey InChI 1.06 UKEIIBAXICGCEM-BPAMBQHCSA-N A1JCF SMILES_CANONICAL CACTVS 3.385 "CN([C@H]1C=Cc2ccccc12)c3nc(Cl)nc4n(nnc34)[C@@H]5O[C@H](CO[P](O)(=O)C[P](O)(O)=O)[C@@H](O)[C@H]5O" A1JCF SMILES CACTVS 3.385 "CN([CH]1C=Cc2ccccc12)c3nc(Cl)nc4n(nnc34)[CH]5O[CH](CO[P](O)(=O)C[P](O)(O)=O)[CH](O)[CH]5O" A1JCF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(c1c2c(nc(n1)Cl)n(nn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(CP(=O)(O)O)O)O)O)[C@H]4C=Cc5c4cccc5" A1JCF SMILES "OpenEye OEToolkits" 2.0.7 "CN(c1c2c(nc(n1)Cl)n(nn2)C3C(C(C(O3)COP(=O)(CP(=O)(O)O)O)O)O)C4C=Cc5c4cccc5" # _pdbx_chem_comp_identifier.comp_id A1JCF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},4~{R},5~{R})-5-[5-chloranyl-7-[[(1~{S})-1~{H}-inden-1-yl]-methyl-amino]-[1,2,3]triazolo[4,5-d]pyrimidin-3-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]methylphosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JCF "Create component" 2025-05-07 PDBE A1JCF "Initial release" 2025-11-12 RCSB #