data_A1JCG # _chem_comp.id A1JCG _chem_comp.name "[(2~{R})-2-[[(2~{R},3~{S},4~{R},5~{R})-5-[6-chloranyl-4-(cyclopentylamino)pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]-1-oxidanyl-3-(2~{H}-1,2,3,4-tetrazol-5-yl)propan-2-yl]phosphonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H27 Cl N9 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-05-07 _chem_comp.pdbx_modified_date 2025-11-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 575.900 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JCG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9R0G _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JCG C5 C1 C 0 1 N N R N N N 82.452 -28.880 -22.574 4.664 0.921 -0.029 C5 A1JCG 1 A1JCG C6 C2 C 0 1 N N N N N N 82.652 -29.223 -21.072 5.053 1.504 1.332 C6 A1JCG 2 A1JCG C7 C3 C 0 1 Y N N N N N 82.197 -28.254 -20.007 5.483 0.390 2.251 C7 A1JCG 3 A1JCG N10 N1 N 0 1 Y N N N N N 81.234 -27.497 -18.282 5.449 -1.156 3.674 N10 A1JCG 4 A1JCG C12 C4 C 0 1 N N N N N N 82.771 -30.176 -23.346 5.826 0.091 -0.578 C12 A1JCG 5 A1JCG O14 O1 O 0 1 N N N N N N 81.096 -28.480 -22.857 3.513 0.089 0.121 O14 A1JCG 6 A1JCG C15 C5 C 0 1 N N N N N N 80.669 -28.297 -24.227 3.023 -0.452 -1.107 C15 A1JCG 7 A1JCG C16 C6 C 0 1 N N R N N N 79.158 -28.217 -24.312 1.881 -1.428 -0.816 C16 A1JCG 8 A1JCG C19 C7 C 0 1 N N R N N N 77.712 -26.548 -25.066 -0.434 -1.379 -0.758 C19 A1JCG 9 A1JCG N22 N2 N 0 1 Y N N N N N 79.361 -25.214 -26.462 -1.599 0.867 -1.089 N22 A1JCG 10 A1JCG C23 C8 C 0 1 Y N N N N N 79.296 -24.144 -27.201 -2.788 1.367 -0.906 C23 A1JCG 11 A1JCG C24 C9 C 0 1 Y N N N N N 77.965 -23.635 -27.201 -3.622 0.356 -0.381 C24 A1JCG 12 A1JCG C27 C10 C 0 1 N N N N N N 78.980 -21.598 -29.335 -7.194 1.314 0.328 C27 A1JCG 13 A1JCG C30 C11 C 0 1 N N N N N N 79.567 -19.730 -30.780 -7.681 3.128 1.885 C30 A1JCG 14 A1JCG C31 C12 C 0 1 N N N N N N 78.796 -21.054 -30.753 -7.321 1.622 1.834 C31 A1JCG 15 A1JCG C33 C13 C 0 1 Y N N N N N 75.266 -23.301 -26.695 -4.665 -1.927 0.574 C33 A1JCG 16 A1JCG C36 C14 C 0 1 Y N N N N N 77.229 -24.520 -26.371 -2.836 -0.806 -0.260 C36 A1JCG 17 A1JCG C37 C15 C 0 1 N N R N N N 77.411 -27.827 -25.860 -0.083 -1.729 -2.227 C37 A1JCG 18 A1JCG C40 C16 C 0 1 N N S N N N 78.719 -28.613 -25.728 1.417 -2.097 -2.123 C40 A1JCG 19 A1JCG O42 O2 O 0 1 N N N N N N 78.571 -30.031 -25.805 1.579 -3.515 -2.045 O42 A1JCG 20 A1JCG O1 O3 O 0 1 N N N N N N 84.942 -27.993 -22.691 2.842 2.896 -0.836 O1 A1JCG 21 A1JCG P2 P1 P 0 1 N N N N N N 83.594 -27.563 -23.108 4.287 2.278 -1.186 P2 A1JCG 22 A1JCG O3 O4 O 0 1 N N N N N N 83.668 -27.407 -24.700 5.318 3.333 -1.062 O3 A1JCG 23 A1JCG O4 O5 O 0 1 N N N N N N 83.194 -26.151 -22.457 4.278 1.712 -2.693 O4 A1JCG 24 A1JCG N8 N3 N 0 1 Y N N N N N 82.586 -26.980 -19.800 6.720 -0.084 2.399 N8 A1JCG 25 A1JCG N9 N4 N 0 1 Y N N N N N 81.967 -26.548 -18.749 6.667 -1.029 3.276 N9 A1JCG 26 A1JCG N11 N5 N 0 1 Y N N N N N 81.380 -28.545 -19.019 4.713 -0.293 3.062 N11 A1JCG 27 A1JCG O13 O6 O 0 1 N N N N N N 81.714 -31.129 -23.208 6.122 -0.973 0.329 O13 A1JCG 28 A1JCG O18 O7 O 0 1 N N N N N N 78.791 -26.835 -24.158 0.754 -0.714 -0.278 O18 A1JCG 29 A1JCG N21 N6 N 0 1 Y N N N N N 78.097 -25.464 -25.941 -1.588 -0.478 -0.701 N21 A1JCG 30 A1JCG C25 C17 C 0 1 Y N N N N N 77.219 -22.544 -27.776 -4.973 0.292 0.012 C25 A1JCG 31 A1JCG N26 N7 N 0 1 N N N N N N 77.710 -21.556 -28.612 -5.791 1.400 -0.085 N26 A1JCG 32 A1JCG C28 C18 C 0 1 N N N N N N 79.980 -20.665 -28.614 -8.027 2.376 -0.410 C28 A1JCG 33 A1JCG C29 C19 C 0 1 N N N N N N 80.708 -19.925 -29.754 -8.632 3.293 0.674 C29 A1JCG 34 A1JCG N32 N8 N 0 1 Y N N N N N 75.902 -22.438 -27.488 -5.441 -0.860 0.478 N32 A1JCG 35 A1JCG CL34 CL1 CL 0 0 N N N N N N 73.562 -23.113 -26.363 -5.344 -3.400 1.191 CL34 A1JCG 36 A1JCG N35 N9 N 0 1 Y N N N N N 75.916 -24.322 -26.153 -3.397 -1.915 0.219 N35 A1JCG 37 A1JCG O39 O8 O 0 1 N N N N N N 76.306 -28.448 -25.206 -0.852 -2.845 -2.682 O39 A1JCG 38 A1JCG H1 H1 H 0 1 N N N N N N 82.120 -30.168 -20.889 5.875 2.208 1.204 H1 A1JCG 39 A1JCG H2 H2 H 0 1 N N N N N N 83.731 -29.375 -20.922 4.196 2.021 1.763 H2 A1JCG 40 A1JCG H3 H3 H 0 1 N N N N N N 80.645 -27.432 -17.476 5.137 -1.797 4.332 H3 A1JCG 41 A1JCG H4 H4 H 0 1 N N N N N N 83.701 -30.611 -22.950 5.549 -0.324 -1.547 H4 A1JCG 42 A1JCG H5 H5 H 0 1 N N N N N N 82.902 -29.937 -24.412 6.705 0.726 -0.692 H5 A1JCG 43 A1JCG H6 H6 H 0 1 N N N N N N 81.020 -29.147 -24.831 2.657 0.356 -1.740 H6 A1JCG 44 A1JCG H7 H7 H 0 1 N N N N N N 81.102 -27.365 -24.619 3.828 -0.979 -1.619 H7 A1JCG 45 A1JCG H8 H8 H 0 1 N N N N N N 78.683 -28.863 -23.559 2.213 -2.185 -0.106 H8 A1JCG 46 A1JCG H9 H9 H 0 1 N N N N N N 76.812 -26.267 -24.500 -0.626 -2.285 -0.183 H9 A1JCG 47 A1JCG H10 H10 H 0 1 N N N N N N 80.127 -23.707 -27.735 -3.085 2.383 -1.120 H10 A1JCG 48 A1JCG H11 H11 H 0 1 N N N N N N 79.382 -22.621 -29.371 -7.585 0.319 0.116 H11 A1JCG 49 A1JCG H12 H12 H 0 1 N N N N N N 79.975 -19.538 -31.783 -8.194 3.372 2.815 H12 A1JCG 50 A1JCG H13 H13 H 0 1 N N N N N N 78.916 -18.895 -30.483 -6.789 3.742 1.762 H13 A1JCG 51 A1JCG H14 H14 H 0 1 N N N N N N 77.730 -20.884 -30.965 -8.116 1.025 2.280 H14 A1JCG 52 A1JCG H15 H15 H 0 1 N N N N N N 79.210 -21.756 -31.492 -6.374 1.439 2.342 H15 A1JCG 53 A1JCG H16 H16 H 0 1 N N N N N N 77.199 -27.593 -26.914 -0.228 -0.867 -2.878 H16 A1JCG 54 A1JCG H17 H17 H 0 1 N N N N N N 79.451 -28.246 -26.462 1.967 -1.696 -2.974 H17 A1JCG 55 A1JCG H18 H18 H 0 1 N N N N N N 79.422 -30.444 -25.715 1.250 -3.992 -2.818 H18 A1JCG 56 A1JCG H19 H19 H 0 1 N N N N N N 85.502 -28.067 -23.455 2.575 3.624 -1.413 H19 A1JCG 57 A1JCG H20 H20 H 0 1 N N N N N N 83.081 -25.505 -23.145 3.692 0.953 -2.824 H20 A1JCG 58 A1JCG H21 H21 H 0 1 N N N N N N 81.933 -31.917 -23.691 6.850 -1.542 0.044 H21 A1JCG 59 A1JCG H22 H22 H 0 1 N N N N N N 77.757 -20.733 -28.046 -5.437 2.236 -0.427 H22 A1JCG 60 A1JCG H23 H23 H 0 1 N N N N N N 80.692 -21.249 -28.012 -7.388 2.956 -1.076 H23 A1JCG 61 A1JCG H24 H24 H 0 1 N N N N N N 79.449 -19.953 -27.965 -8.823 1.897 -0.981 H24 A1JCG 62 A1JCG H25 H25 H 0 1 N N N N N N 81.523 -20.535 -30.172 -9.639 2.966 0.932 H25 A1JCG 63 A1JCG H26 H26 H 0 1 N N N N N N 81.110 -18.960 -29.413 -8.642 4.329 0.335 H26 A1JCG 64 A1JCG H27 H27 H 0 1 N N N N N N 75.528 -27.916 -25.323 -0.606 -3.158 -3.563 H27 A1JCG 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JCG C30 C31 SING N N 1 A1JCG C30 C29 SING N N 2 A1JCG C31 C27 SING N N 3 A1JCG C29 C28 SING N N 4 A1JCG C27 C28 SING N N 5 A1JCG C27 N26 SING N N 6 A1JCG N26 C25 SING N N 7 A1JCG C25 N32 DOUB Y N 8 A1JCG C25 C24 SING Y N 9 A1JCG N32 C33 SING Y N 10 A1JCG C23 C24 SING Y N 11 A1JCG C23 N22 DOUB Y N 12 A1JCG C24 C36 DOUB Y N 13 A1JCG C33 CL34 SING N N 14 A1JCG C33 N35 DOUB Y N 15 A1JCG N22 N21 SING Y N 16 A1JCG C36 N35 SING Y N 17 A1JCG C36 N21 SING Y N 18 A1JCG N21 C19 SING N N 19 A1JCG C37 C40 SING N N 20 A1JCG C37 O39 SING N N 21 A1JCG C37 C19 SING N N 22 A1JCG O42 C40 SING N N 23 A1JCG C40 C16 SING N N 24 A1JCG C19 O18 SING N N 25 A1JCG O3 P2 DOUB N N 26 A1JCG C16 C15 SING N N 27 A1JCG C16 O18 SING N N 28 A1JCG C15 O14 SING N N 29 A1JCG C12 O13 SING N N 30 A1JCG C12 C5 SING N N 31 A1JCG P2 O1 SING N N 32 A1JCG P2 C5 SING N N 33 A1JCG P2 O4 SING N N 34 A1JCG O14 C5 SING N N 35 A1JCG C5 C6 SING N N 36 A1JCG C6 C7 SING N N 37 A1JCG C7 N8 SING Y N 38 A1JCG C7 N11 DOUB Y N 39 A1JCG N8 N9 DOUB Y N 40 A1JCG N11 N10 SING Y N 41 A1JCG N9 N10 SING Y N 42 A1JCG C6 H1 SING N N 43 A1JCG C6 H2 SING N N 44 A1JCG N10 H3 SING N N 45 A1JCG C12 H4 SING N N 46 A1JCG C12 H5 SING N N 47 A1JCG C15 H6 SING N N 48 A1JCG C15 H7 SING N N 49 A1JCG C16 H8 SING N N 50 A1JCG C19 H9 SING N N 51 A1JCG C23 H10 SING N N 52 A1JCG C27 H11 SING N N 53 A1JCG C30 H12 SING N N 54 A1JCG C30 H13 SING N N 55 A1JCG C31 H14 SING N N 56 A1JCG C31 H15 SING N N 57 A1JCG C37 H16 SING N N 58 A1JCG C40 H17 SING N N 59 A1JCG O42 H18 SING N N 60 A1JCG O1 H19 SING N N 61 A1JCG O4 H20 SING N N 62 A1JCG O13 H21 SING N N 63 A1JCG N26 H22 SING N N 64 A1JCG C28 H23 SING N N 65 A1JCG C28 H24 SING N N 66 A1JCG C29 H25 SING N N 67 A1JCG C29 H26 SING N N 68 A1JCG O39 H27 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JCG InChI InChI 1.06 "InChI=1S/C19H27ClN9O8P/c20-18-23-15(22-9-3-1-2-4-9)10-6-21-29(16(10)24-18)17-14(32)13(31)11(37-17)7-36-19(8-30,38(33,34)35)5-12-25-27-28-26-12/h6,9,11,13-14,17,30-32H,1-5,7-8H2,(H,22,23,24)(H2,33,34,35)(H,25,26,27,28)/t11-,13-,14-,17-,19-/m1/s1" A1JCG InChIKey InChI 1.06 PVVWULAPDGYSNQ-XTKAHFKISA-N A1JCG SMILES_CANONICAL CACTVS 3.385 "OC[C@](Cc1n[nH]nn1)(OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3ncc4c(NC5CCCC5)nc(Cl)nc34)[P](O)(O)=O" A1JCG SMILES CACTVS 3.385 "OC[C](Cc1n[nH]nn1)(OC[CH]2O[CH]([CH](O)[CH]2O)n3ncc4c(NC5CCCC5)nc(Cl)nc34)[P](O)(O)=O" A1JCG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c2c(nc(nc2n(n1)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[C@@](Cc4n[nH]nn4)(CO)P(=O)(O)O)O)O)Cl)NC5CCCC5" A1JCG SMILES "OpenEye OEToolkits" 2.0.7 "c1c2c(nc(nc2n(n1)C3C(C(C(O3)COC(Cc4n[nH]nn4)(CO)P(=O)(O)O)O)O)Cl)NC5CCCC5" # _pdbx_chem_comp_identifier.comp_id A1JCG _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R})-2-[[(2~{R},3~{S},4~{R},5~{R})-5-[6-chloranyl-4-(cyclopentylamino)pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]-1-oxidanyl-3-(2~{H}-1,2,3,4-tetrazol-5-yl)propan-2-yl]phosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JCG "Create component" 2025-05-07 PDBE A1JCG "Initial release" 2025-11-12 RCSB #