data_A1JCH # _chem_comp.id A1JCH _chem_comp.name "[(2~{S})-2-[[(2~{R},3~{S},4~{R},5~{R})-5-[6-chloranyl-4-(cyclopentylamino)pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]-1-oxidanyl-3-(1~{H}-1,2,3,4-tetrazol-5-ylmethoxy)propan-2-yl]phosphonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H29 Cl N9 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-05-07 _chem_comp.pdbx_modified_date 2025-11-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 605.926 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JCH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9R0H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JCH C1 C1 C 0 1 N N S N N N 26.935 -27.513 -4.658 4.081 0.536 0.003 C1 A1JCH 1 A1JCH C2 C2 C 0 1 N N N N N N 28.772 -26.887 -3.098 2.086 1.657 0.717 C2 A1JCH 2 A1JCH C3 C3 C 0 1 N N R N N N 30.276 -27.003 -3.031 0.739 2.171 0.207 C3 A1JCH 3 A1JCH C4 C4 C 0 1 N N R N N N 31.969 -25.567 -2.270 -1.489 1.656 0.004 C4 A1JCH 4 A1JCH C5 C5 C 0 1 N N R N N N 32.204 -26.933 -1.640 -1.447 2.695 1.146 C5 A1JCH 5 A1JCH C6 C6 C 0 1 N N S N N N 30.813 -27.555 -1.716 0.053 3.042 1.283 C6 A1JCH 6 A1JCH C7 C7 C 0 1 Y N N N N N 30.723 -23.407 0.216 -3.462 -1.131 1.207 C7 A1JCH 7 A1JCH C8 C8 C 0 1 Y N N N N N 31.993 -22.801 0.066 -4.356 -0.589 0.258 C8 A1JCH 8 A1JCH C11 C9 C 0 1 Y N N N N N 32.782 -21.705 0.563 -5.649 -0.922 -0.187 C11 A1JCH 9 A1JCH C12 C10 C 0 1 N N N N N N 30.961 -20.420 1.785 -7.666 -2.339 -0.136 C12 A1JCH 10 A1JCH C15 C11 C 0 1 N N N N N N 29.848 -19.125 3.496 -9.168 -3.919 1.026 C15 A1JCH 11 A1JCH C16 C12 C 0 1 N N N N N N 30.655 -20.386 3.284 -7.950 -3.836 0.083 C16 A1JCH 12 A1JCH C17 C13 C 0 1 N N N N N N 26.856 -27.820 -6.201 4.667 -0.277 -1.154 C17 A1JCH 13 A1JCH C18 C14 C 0 1 N N N N N N 27.606 -27.028 -8.275 6.633 -1.464 -1.839 C18 A1JCH 14 A1JCH C19 C15 C 0 1 Y N N N N N 28.152 -25.834 -8.978 8.017 -1.847 -1.383 C19 A1JCH 15 A1JCH CL CL1 CL 0 0 N N N N N N 36.077 -22.015 -1.409 -6.364 1.816 -2.862 CL A1JCH 16 A1JCH C10 C16 C 0 1 Y N N N N N 34.466 -22.330 -0.835 -5.572 0.874 -1.637 C10 A1JCH 17 A1JCH N3 N1 N 0 1 Y N N N N N 34.029 -21.497 0.098 -6.208 -0.167 -1.127 N3 A1JCH 18 A1JCH N4 N2 N 0 1 N N N N N N 32.324 -20.882 1.537 -6.320 -2.008 0.340 N4 A1JCH 19 A1JCH C14 C17 C 0 1 N N N N N N 29.565 -18.545 2.158 -9.895 -2.566 0.828 C14 A1JCH 20 A1JCH C13 C18 C 0 1 N N N N N N 30.732 -18.986 1.344 -8.722 -1.566 0.680 C13 A1JCH 21 A1JCH N1 N3 N 0 1 Y N N N N N 30.585 -24.438 -0.590 -2.380 -0.406 1.215 N1 A1JCH 22 A1JCH N2 N4 N 0 1 Y N N N N N 33.864 -23.367 -1.399 -4.363 1.224 -1.253 N2 A1JCH 23 A1JCH C9 C19 C 0 1 Y N N N N N 32.626 -23.560 -0.917 -3.720 0.529 -0.316 C9 A1JCH 24 A1JCH N N5 N 0 1 Y N N N N N 31.755 -24.528 -1.294 -2.500 0.632 0.283 N A1JCH 25 A1JCH O5 O1 O 0 1 N N N N N N 30.846 -25.682 -3.127 -0.170 1.069 -0.011 O5 A1JCH 26 A1JCH O7 O2 O 0 1 N N N N N N 33.204 -27.616 -2.387 -2.202 3.856 0.795 O7 A1JCH 27 A1JCH O6 O3 O 0 1 N N N N N N 30.864 -28.977 -1.672 0.272 4.429 1.019 O6 A1JCH 28 A1JCH O4 O4 O 0 1 N N N N N N 28.332 -27.273 -4.402 2.756 0.952 -0.331 O4 A1JCH 29 A1JCH C C20 C 0 1 N N N N N N 26.424 -28.743 -3.858 4.954 1.767 0.254 C A1JCH 30 A1JCH O O5 O 0 1 N N N N N N 27.159 -29.903 -4.213 4.991 2.574 -0.924 O A1JCH 31 A1JCH P P1 P 0 1 N N N N N N 25.778 -26.135 -4.302 4.034 -0.493 1.506 P A1JCH 32 A1JCH O2 O6 O 0 1 N N N N N N 25.749 -26.073 -2.780 3.809 0.447 2.794 O2 A1JCH 33 A1JCH O3 O7 O 0 1 N N N N N N 26.280 -24.770 -4.793 2.825 -1.551 1.396 O3 A1JCH 34 A1JCH O1 O8 O 0 1 N N N N N N 24.455 -26.507 -4.898 5.315 -1.222 1.646 O1 A1JCH 35 A1JCH O8 O9 O 0 1 N N N N N N 27.391 -26.714 -6.913 5.992 -0.693 -0.820 O8 A1JCH 36 A1JCH N8 N6 N 0 1 Y N N N N N 29.373 -25.771 -9.481 8.593 -1.531 -0.208 N8 A1JCH 37 A1JCH N7 N7 N 0 1 Y N N N N N 29.493 -24.535 -10.032 9.775 -2.048 -0.212 N7 A1JCH 38 A1JCH N6 N8 N 0 1 Y N N N N N 28.402 -23.857 -9.871 9.954 -2.665 -1.328 N6 A1JCH 39 A1JCH N5 N9 N 0 1 Y N N N N N 27.549 -24.671 -9.217 8.893 -2.557 -2.051 N5 A1JCH 40 A1JCH H1 H1 H 0 1 N N N N N N 28.473 -25.847 -2.901 2.699 2.500 1.037 H1 A1JCH 41 A1JCH H2 H2 H 0 1 N N N N N N 28.317 -27.548 -2.345 1.923 0.985 1.560 H2 A1JCH 42 A1JCH H3 H3 H 0 1 N N N N N N 30.631 -27.633 -3.860 0.874 2.740 -0.713 H3 A1JCH 43 A1JCH H4 H4 H 0 1 N N N N N N 32.857 -25.315 -2.869 -1.699 2.146 -0.947 H4 A1JCH 44 A1JCH H5 H5 H 0 1 N N N N N N 32.502 -26.813 -0.588 -1.824 2.261 2.072 H5 A1JCH 45 A1JCH H6 H6 H 0 1 N N N N N N 30.202 -27.167 -0.888 0.419 2.780 2.276 H6 A1JCH 46 A1JCH H7 H7 H 0 1 N N N N N N 29.964 -23.067 0.904 -3.646 -1.997 1.824 H7 A1JCH 47 A1JCH H8 H8 H 0 1 N N N N N N 30.238 -21.078 1.281 -7.759 -2.093 -1.194 H8 A1JCH 48 A1JCH H9 H9 H 0 1 N N N N N N 30.423 -18.409 4.102 -9.816 -4.747 0.739 H9 A1JCH 49 A1JCH H10 H10 H 0 1 N N N N N N 28.905 -19.365 4.008 -8.843 -4.032 2.060 H10 A1JCH 50 A1JCH H11 H11 H 0 1 N N N N N N 30.072 -21.271 3.579 -8.180 -4.315 -0.868 H11 A1JCH 51 A1JCH H12 H12 H 0 1 N N N N N N 31.587 -20.350 3.867 -7.086 -4.315 0.545 H12 A1JCH 52 A1JCH H13 H13 H 0 1 N N N N N N 25.807 -27.977 -6.494 4.045 -1.154 -1.333 H13 A1JCH 53 A1JCH H14 H14 H 0 1 N N N N N N 27.439 -28.724 -6.429 4.695 0.339 -2.053 H14 A1JCH 54 A1JCH H15 H15 H 0 1 N N N N N N 26.653 -27.323 -8.738 6.702 -0.873 -2.752 H15 A1JCH 55 A1JCH H16 H16 H 0 1 N N N N N N 28.323 -27.859 -8.351 6.052 -2.365 -2.032 H16 A1JCH 56 A1JCH H17 H17 H 0 1 N N N N N N 32.593 -21.332 2.389 -5.901 -2.552 1.025 H17 A1JCH 57 A1JCH H18 H18 H 0 1 N N N N N N 29.510 -17.447 2.207 -10.504 -2.583 -0.076 H18 A1JCH 58 A1JCH H19 H19 H 0 1 N N N N N N 28.625 -18.941 1.747 -10.505 -2.325 1.699 H19 A1JCH 59 A1JCH H20 H20 H 0 1 N N N N N N 31.615 -18.365 1.556 -8.325 -1.296 1.659 H20 A1JCH 60 A1JCH H21 H21 H 0 1 N N N N N N 30.500 -18.939 0.270 -9.045 -0.676 0.141 H21 A1JCH 61 A1JCH H22 H22 H 0 1 N N N N N N 33.359 -28.471 -2.002 -2.209 4.542 1.477 H22 A1JCH 62 A1JCH H23 H23 H 0 1 N N N N N N 31.206 -29.256 -0.831 -0.137 5.021 1.664 H23 A1JCH 63 A1JCH H24 H24 H 0 1 N N N N N N 26.546 -28.552 -2.782 4.537 2.346 1.078 H24 A1JCH 64 A1JCH H25 H25 H 0 1 N N N N N N 25.360 -28.905 -4.083 5.965 1.449 0.509 H25 A1JCH 65 A1JCH H26 H26 H 0 1 N N N N N N 26.837 -30.647 -3.717 5.528 3.374 -0.837 H26 A1JCH 66 A1JCH H27 H27 H 0 1 N N N N N N 24.877 -26.286 -2.471 3.037 1.026 2.727 H27 A1JCH 67 A1JCH H28 H28 H 0 1 N N N N N N 25.649 -24.399 -5.399 2.740 -2.133 2.163 H28 A1JCH 68 A1JCH H29 H29 H 0 1 N N N N N N 30.069 -26.489 -9.460 8.194 -1.011 0.508 H29 A1JCH 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JCH N7 N6 DOUB Y N 1 A1JCH N7 N8 SING Y N 2 A1JCH N6 N5 SING Y N 3 A1JCH N8 C19 SING Y N 4 A1JCH N5 C19 DOUB Y N 5 A1JCH C19 C18 SING N N 6 A1JCH C18 O8 SING N N 7 A1JCH O8 C17 SING N N 8 A1JCH C17 C1 SING N N 9 A1JCH O1 P DOUB N N 10 A1JCH O3 P SING N N 11 A1JCH C1 O4 SING N N 12 A1JCH C1 P SING N N 13 A1JCH C1 C SING N N 14 A1JCH O4 C2 SING N N 15 A1JCH P O2 SING N N 16 A1JCH O C SING N N 17 A1JCH O5 C3 SING N N 18 A1JCH O5 C4 SING N N 19 A1JCH C2 C3 SING N N 20 A1JCH C3 C6 SING N N 21 A1JCH O7 C5 SING N N 22 A1JCH C4 C5 SING N N 23 A1JCH C4 N SING N N 24 A1JCH C6 O6 SING N N 25 A1JCH C6 C5 SING N N 26 A1JCH CL C10 SING N N 27 A1JCH N2 C9 DOUB Y N 28 A1JCH N2 C10 SING Y N 29 A1JCH N C9 SING Y N 30 A1JCH N N1 SING Y N 31 A1JCH C9 C8 SING Y N 32 A1JCH C10 N3 DOUB Y N 33 A1JCH N1 C7 DOUB Y N 34 A1JCH C8 C7 SING Y N 35 A1JCH C8 C11 DOUB Y N 36 A1JCH N3 C11 SING Y N 37 A1JCH C11 N4 SING N N 38 A1JCH C13 C12 SING N N 39 A1JCH C13 C14 SING N N 40 A1JCH N4 C12 SING N N 41 A1JCH C12 C16 SING N N 42 A1JCH C14 C15 SING N N 43 A1JCH C16 C15 SING N N 44 A1JCH C2 H1 SING N N 45 A1JCH C2 H2 SING N N 46 A1JCH C3 H3 SING N N 47 A1JCH C4 H4 SING N N 48 A1JCH C5 H5 SING N N 49 A1JCH C6 H6 SING N N 50 A1JCH C7 H7 SING N N 51 A1JCH C12 H8 SING N N 52 A1JCH C15 H9 SING N N 53 A1JCH C15 H10 SING N N 54 A1JCH C16 H11 SING N N 55 A1JCH C16 H12 SING N N 56 A1JCH C17 H13 SING N N 57 A1JCH C17 H14 SING N N 58 A1JCH C18 H15 SING N N 59 A1JCH C18 H16 SING N N 60 A1JCH N4 H17 SING N N 61 A1JCH C14 H18 SING N N 62 A1JCH C14 H19 SING N N 63 A1JCH C13 H20 SING N N 64 A1JCH C13 H21 SING N N 65 A1JCH O7 H22 SING N N 66 A1JCH O6 H23 SING N N 67 A1JCH C H24 SING N N 68 A1JCH C H25 SING N N 69 A1JCH O H26 SING N N 70 A1JCH O2 H27 SING N N 71 A1JCH O3 H28 SING N N 72 A1JCH N8 H29 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JCH InChI InChI 1.06 "InChI=1S/C20H29ClN9O9P/c21-19-24-16(23-10-3-1-2-4-10)11-5-22-30(17(11)25-19)18-15(33)14(32)12(39-18)6-38-20(8-31,40(34,35)36)9-37-7-13-26-28-29-27-13/h5,10,12,14-15,18,31-33H,1-4,6-9H2,(H,23,24,25)(H2,34,35,36)(H,26,27,28,29)/t12-,14-,15-,18-,20+/m1/s1" A1JCH InChIKey InChI 1.06 WQAMOSWUARUEOH-GGBXQBQZSA-N A1JCH SMILES_CANONICAL CACTVS 3.385 "OC[C@](COCc1[nH]nnn1)(OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3ncc4c(NC5CCCC5)nc(Cl)nc34)[P](O)(O)=O" A1JCH SMILES CACTVS 3.385 "OC[C](COCc1[nH]nnn1)(OC[CH]2O[CH]([CH](O)[CH]2O)n3ncc4c(NC5CCCC5)nc(Cl)nc34)[P](O)(O)=O" A1JCH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c2c(nc(nc2n(n1)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[C@](CO)(COCc4[nH]nnn4)P(=O)(O)O)O)O)Cl)NC5CCCC5" A1JCH SMILES "OpenEye OEToolkits" 2.0.7 "c1c2c(nc(nc2n(n1)C3C(C(C(O3)COC(CO)(COCc4[nH]nnn4)P(=O)(O)O)O)O)Cl)NC5CCCC5" # _pdbx_chem_comp_identifier.comp_id A1JCH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{S})-2-[[(2~{R},3~{S},4~{R},5~{R})-5-[6-chloranyl-4-(cyclopentylamino)pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]-1-oxidanyl-3-(1~{H}-1,2,3,4-tetrazol-5-ylmethoxy)propan-2-yl]phosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JCH "Create component" 2025-05-07 PDBE A1JCH "Initial release" 2025-11-12 RCSB #