data_A1JD0 # _chem_comp.id A1JD0 _chem_comp.name "(1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-1-[(2~{S})-6-[bis(oxidanyl)amino]-6-methyl-heptan-2-yl]-7~{a}-methyl-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H45 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-05-23 _chem_comp.pdbx_modified_date 2026-04-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 447.651 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JD0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RAP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JD0 C4 C1 C 0 1 N N N N N N -33.171 21.079 -6.457 -5.209 1.417 -1.082 C4 A1JD0 1 A1JD0 C5 C2 C 0 1 N N N N N N -34.914 19.720 -5.434 -4.967 -0.430 0.517 C5 A1JD0 2 A1JD0 C6 C3 C 0 1 N N N N N N -34.280 18.573 -5.054 -3.882 -0.012 1.202 C6 A1JD0 3 A1JD0 C7 C4 C 0 1 N N N N N N -32.898 18.442 -4.652 -2.995 1.000 0.623 C7 A1JD0 4 A1JD0 C8 C5 C 0 1 N N N N N N -32.136 17.340 -4.735 -1.924 1.413 1.299 C8 A1JD0 5 A1JD0 C10 C6 C 0 1 N N N N N N -31.748 15.730 -6.588 -0.109 0.427 2.724 C10 A1JD0 6 A1JD0 C13 C7 C 0 1 N N N N N N -30.100 18.318 -6.695 0.277 0.436 -0.022 C13 A1JD0 7 A1JD0 C15 C8 C 0 1 N N N N N N -29.995 18.499 -3.716 -1.164 2.845 -0.707 C15 A1JD0 8 A1JD0 C17 C9 C 0 1 N N R N N N -28.376 17.250 -5.133 1.252 2.723 -0.111 C17 A1JD0 9 A1JD0 C20 C10 C 0 1 N N N N N N -27.127 16.829 -7.353 3.234 1.216 0.096 C20 A1JD0 10 A1JD0 C21 C11 C 0 1 N N N N N N -26.112 17.399 -8.343 4.226 0.348 -0.681 C21 A1JD0 11 A1JD0 C22 C12 C 0 1 N N N N N N -26.319 16.924 -9.773 5.137 -0.389 0.303 C22 A1JD0 12 A1JD0 C24 C13 C 0 1 N N N N N N -25.762 19.205 -10.726 5.362 -2.275 -1.321 C24 A1JD0 13 A1JD0 C11 C14 C 0 1 N N N N N N -30.242 15.816 -6.343 0.832 1.500 2.152 C11 A1JD0 14 A1JD0 C12 C15 C 0 1 N N R N N N -29.807 17.159 -5.728 0.412 1.766 0.721 C12 A1JD0 15 A1JD0 C14 C16 C 0 1 N N S N N N -30.657 17.327 -4.442 -0.984 2.450 0.760 C14 A1JD0 16 A1JD0 C16 C17 C 0 1 N N N N N N -28.502 18.235 -3.945 0.241 3.388 -1.092 C16 A1JD0 17 A1JD0 C18 C18 C 0 1 N N R N N N -27.190 17.632 -6.043 2.322 1.954 -0.887 C18 A1JD0 18 A1JD0 C19 C19 C 0 1 N N N N N N -25.847 17.563 -5.319 3.154 2.934 -1.717 C19 A1JD0 19 A1JD0 C2 C20 C 0 1 N N S N N N -34.956 22.219 -5.316 -5.741 -0.883 -1.869 C2 A1JD0 20 A1JD0 C23 C21 C 0 1 N N N N N N -25.547 17.703 -10.845 6.129 -1.257 -0.474 C23 A1JD0 21 A1JD0 C25 C22 C 0 1 N N N N N N -25.936 17.211 -12.244 6.977 -0.369 -1.388 C25 A1JD0 22 A1JD0 C29 C23 C 0 1 N N N N N N -36.388 19.724 -5.773 -5.908 -1.475 1.081 C29 A1JD0 23 A1JD0 C3 C24 C 0 1 N N N N N N -34.279 20.996 -5.741 -5.297 0.113 -0.817 C3 A1JD0 24 A1JD0 C30 C25 C 0 1 N N S N N N -37.105 20.955 -5.241 -6.193 -2.509 -0.013 C30 A1JD0 25 A1JD0 C32 C26 C 0 1 N N N N N N -36.416 22.211 -5.738 -6.785 -1.816 -1.240 C32 A1JD0 26 A1JD0 C9 C27 C 0 1 N N N N N N -32.569 16.024 -5.314 -1.570 0.870 2.677 C9 A1JD0 27 A1JD0 N26 N1 N 0 1 N N N N N N -24.039 17.481 -10.647 7.004 -1.965 0.470 N26 A1JD0 28 A1JD0 O1 O1 O 0 1 N N N N N N -34.317 23.361 -5.877 -4.618 -1.647 -2.314 O1 A1JD0 29 A1JD0 O27 O2 O 0 1 N N N N N N -23.706 16.272 -10.175 6.220 -2.753 1.421 O27 A1JD0 30 A1JD0 O28 O3 O 0 1 N N N N N N -23.573 18.438 -9.708 7.968 -2.807 -0.239 O28 A1JD0 31 A1JD0 O31 O4 O 0 1 N N N N N N -37.091 20.927 -3.805 -7.120 -3.478 0.479 O31 A1JD0 32 A1JD0 H4B H1 H 0 1 N N N N N N -32.705 20.182 -6.837 -5.458 1.786 -2.066 H4B A1JD0 33 A1JD0 H4A H2 H 0 1 N N N N N N -32.732 22.044 -6.662 -4.894 2.105 -0.311 H4A A1JD0 34 A1JD0 H6 H3 H 0 1 N N N N N N -34.872 17.670 -5.054 -3.668 -0.424 2.177 H6 A1JD0 35 A1JD0 H7 H4 H 0 1 N N N N N N -32.429 19.324 -4.241 -3.210 1.411 -0.353 H7 A1JD0 36 A1JD0 H10B H5 H 0 0 N N N N N N -31.992 14.716 -6.939 -0.000 -0.488 2.141 H10B A1JD0 37 A1JD0 H10A H6 H 0 0 N N N N N N -32.022 16.462 -7.362 0.170 0.224 3.758 H10A A1JD0 38 A1JD0 H13C H7 H 0 0 N N N N N N -29.783 19.267 -6.238 1.247 -0.061 -0.057 H13C A1JD0 39 A1JD0 H13A H8 H 0 0 N N N N N N -29.548 18.161 -7.634 -0.438 -0.200 0.499 H13A A1JD0 40 A1JD0 H13B H9 H 0 0 N N N N N N -31.179 18.356 -6.906 -0.073 0.620 -1.037 H13B A1JD0 41 A1JD0 H15A H10 H 0 0 N N N N N N -30.300 19.461 -4.154 -1.422 1.976 -1.312 H15A A1JD0 42 A1JD0 H15B H11 H 0 0 N N N N N N -30.240 18.491 -2.644 -1.920 3.625 -0.807 H15B A1JD0 43 A1JD0 H17 H12 H 0 1 N N N N N N -28.146 16.263 -4.706 1.715 3.475 0.528 H17 A1JD0 44 A1JD0 H20B H13 H 0 0 N N N N N N -26.845 15.792 -7.117 2.630 0.584 0.747 H20B A1JD0 45 A1JD0 H20A H14 H 0 0 N N N N N N -28.122 16.841 -7.822 3.780 1.942 0.699 H20A A1JD0 46 A1JD0 H21A H15 H 0 0 N N N N N N -26.190 18.496 -8.327 3.680 -0.377 -1.284 H21A A1JD0 47 A1JD0 H21B H16 H 0 0 N N N N N N -25.105 17.098 -8.020 4.830 0.981 -1.332 H21B A1JD0 48 A1JD0 H22B H17 H 0 0 N N N N N N -26.007 15.871 -9.829 5.683 0.336 0.906 H22B A1JD0 49 A1JD0 H22A H18 H 0 0 N N N N N N -27.392 17.002 -10.004 4.533 -1.021 0.953 H22A A1JD0 50 A1JD0 H24C H19 H 0 0 N N N N N N -25.191 19.721 -11.512 4.713 -1.750 -2.021 H24C A1JD0 51 A1JD0 H24B H20 H 0 0 N N N N N N -26.832 19.432 -10.841 6.069 -2.893 -1.874 H24B A1JD0 52 A1JD0 H24A H21 H 0 0 N N N N N N -25.418 19.547 -9.739 4.759 -2.907 -0.670 H24A A1JD0 53 A1JD0 H11B H22 H 0 0 N N N N N N -29.952 15.006 -5.657 0.747 2.416 2.737 H11B A1JD0 54 A1JD0 H11A H23 H 0 0 N N N N N N -29.723 15.686 -7.304 1.860 1.140 2.174 H11A A1JD0 55 A1JD0 H14 H24 H 0 1 N N N N N N -30.465 16.434 -3.829 -0.969 3.329 1.406 H14 A1JD0 56 A1JD0 H16A H25 H 0 0 N N N N N N -27.987 19.177 -4.183 0.481 3.110 -2.118 H16A A1JD0 57 A1JD0 H16B H26 H 0 0 N N N N N N -28.057 17.792 -3.042 0.267 4.471 -0.981 H16B A1JD0 58 A1JD0 H18 H27 H 0 1 N N N N N N -27.341 18.684 -6.327 1.843 1.232 -1.549 H18 A1JD0 59 A1JD0 H19A H28 H 0 0 N N N N N N -25.041 17.844 -6.013 3.917 2.385 -2.270 H19A A1JD0 60 A1JD0 H19C H29 H 0 0 N N N N N N -25.855 18.257 -4.466 2.505 3.459 -2.417 H19C A1JD0 61 A1JD0 H19B H30 H 0 0 N N N N N N -25.678 16.538 -4.957 3.633 3.655 -1.055 H19B A1JD0 62 A1JD0 H2 H31 H 0 1 N N N N N N -34.918 22.283 -4.218 -6.182 -0.353 -2.714 H2 A1JD0 63 A1JD0 H25C H32 H 0 0 N N N N N N -25.375 17.778 -13.002 7.523 0.356 -0.785 H25C A1JD0 64 A1JD0 H25A H33 H 0 0 N N N N N N -25.697 16.141 -12.336 7.684 -0.988 -1.941 H25A A1JD0 65 A1JD0 H25B H34 H 0 0 N N N N N N -27.015 17.361 -12.398 6.328 0.156 -2.088 H25B A1JD0 66 A1JD0 H29A H35 H 0 0 N N N N N N -36.498 19.697 -6.867 -5.444 -1.964 1.937 H29A A1JD0 67 A1JD0 H29B H36 H 0 0 N N N N N N -36.853 18.828 -5.335 -6.840 -1.001 1.389 H29B A1JD0 68 A1JD0 H30 H37 H 0 1 N N N N N N -38.142 20.948 -5.607 -5.263 -3.006 -0.292 H30 A1JD0 69 A1JD0 H32B H38 H 0 0 N N N N N N -36.476 22.247 -6.836 -7.655 -1.231 -0.941 H32B A1JD0 70 A1JD0 H32A H39 H 0 0 N N N N N N -36.920 23.092 -5.315 -7.089 -2.567 -1.969 H32A A1JD0 71 A1JD0 H9B H40 H 0 1 N N N N N N -32.401 15.225 -4.576 -1.733 1.648 3.422 H9B A1JD0 72 A1JD0 H9A H41 H 0 1 N N N N N N -33.638 16.069 -5.569 -2.211 0.018 2.902 H9A A1JD0 73 A1JD0 H1 H42 H 0 1 N N N N N N -34.767 24.148 -5.593 -3.912 -1.116 -2.706 H1 A1JD0 74 A1JD0 H3 H43 H 0 1 N N N N N N -22.762 16.217 -10.082 6.755 -3.238 2.065 H3 A1JD0 75 A1JD0 H28 H44 H 0 1 N N N N N N -22.641 18.319 -9.570 8.567 -3.294 0.343 H28 A1JD0 76 A1JD0 H31 H45 H 0 1 N N N N N N -37.538 21.695 -3.468 -6.808 -3.962 1.257 H31 A1JD0 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JD0 O1 C2 SING N N 1 A1JD0 C2 C3 SING N N 2 A1JD0 C3 C4 DOUB N N 3 A1JD0 C3 C5 SING N N 4 A1JD0 C5 C6 DOUB N Z 5 A1JD0 C6 C7 SING N N 6 A1JD0 C7 C8 DOUB N E 7 A1JD0 C8 C9 SING N N 8 A1JD0 C9 C10 SING N N 9 A1JD0 C10 C11 SING N N 10 A1JD0 C11 C12 SING N N 11 A1JD0 C12 C13 SING N N 12 A1JD0 C12 C14 SING N N 13 A1JD0 C14 C15 SING N N 14 A1JD0 C15 C16 SING N N 15 A1JD0 C16 C17 SING N N 16 A1JD0 C17 C18 SING N N 17 A1JD0 C18 C19 SING N N 18 A1JD0 C18 C20 SING N N 19 A1JD0 C20 C21 SING N N 20 A1JD0 C21 C22 SING N N 21 A1JD0 C22 C23 SING N N 22 A1JD0 C23 C24 SING N N 23 A1JD0 C23 C25 SING N N 24 A1JD0 C23 N26 SING N N 25 A1JD0 N26 O27 SING N N 26 A1JD0 N26 O28 SING N N 27 A1JD0 C5 C29 SING N N 28 A1JD0 C29 C30 SING N N 29 A1JD0 C30 O31 SING N N 30 A1JD0 C30 C32 SING N N 31 A1JD0 C32 C2 SING N N 32 A1JD0 C14 C8 SING N N 33 A1JD0 C17 C12 SING N N 34 A1JD0 C4 H4B SING N N 35 A1JD0 C4 H4A SING N N 36 A1JD0 C6 H6 SING N N 37 A1JD0 C7 H7 SING N N 38 A1JD0 C10 H10B SING N N 39 A1JD0 C10 H10A SING N N 40 A1JD0 C13 H13C SING N N 41 A1JD0 C13 H13A SING N N 42 A1JD0 C13 H13B SING N N 43 A1JD0 C15 H15A SING N N 44 A1JD0 C15 H15B SING N N 45 A1JD0 C17 H17 SING N N 46 A1JD0 C20 H20B SING N N 47 A1JD0 C20 H20A SING N N 48 A1JD0 C21 H21A SING N N 49 A1JD0 C21 H21B SING N N 50 A1JD0 C22 H22B SING N N 51 A1JD0 C22 H22A SING N N 52 A1JD0 C24 H24C SING N N 53 A1JD0 C24 H24B SING N N 54 A1JD0 C24 H24A SING N N 55 A1JD0 C11 H11B SING N N 56 A1JD0 C11 H11A SING N N 57 A1JD0 C14 H14 SING N N 58 A1JD0 C16 H16A SING N N 59 A1JD0 C16 H16B SING N N 60 A1JD0 C18 H18 SING N N 61 A1JD0 C19 H19A SING N N 62 A1JD0 C19 H19C SING N N 63 A1JD0 C19 H19B SING N N 64 A1JD0 C2 H2 SING N N 65 A1JD0 C25 H25C SING N N 66 A1JD0 C25 H25A SING N N 67 A1JD0 C25 H25B SING N N 68 A1JD0 C29 H29A SING N N 69 A1JD0 C29 H29B SING N N 70 A1JD0 C30 H30 SING N N 71 A1JD0 C32 H32B SING N N 72 A1JD0 C32 H32A SING N N 73 A1JD0 C9 H9B SING N N 74 A1JD0 C9 H9A SING N N 75 A1JD0 O1 H1 SING N N 76 A1JD0 O27 H3 SING N N 77 A1JD0 O28 H28 SING N N 78 A1JD0 O31 H31 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JD0 InChI InChI 1.06 "InChI=1S/C27H45NO4/c1-18(8-6-14-26(3,4)28(31)32)23-12-13-24-20(9-7-15-27(23,24)5)10-11-21-16-22(29)17-25(30)19(21)2/h10-11,18,22-25,29-32H,2,6-9,12-17H2,1,3-5H3/b20-10+,21-11-/t18-,22+,23-,24+,25+,27-/m1/s1" A1JD0 InChIKey InChI 1.06 CIORHXCMWYBSHP-GNVXBELXSA-N A1JD0 SMILES_CANONICAL CACTVS 3.385 "C[C@H](CCCC(C)(C)N(O)O)[C@H]1CC[C@H]2/C(CCC[C@]12C)=C/C=C3/C[C@H](O)C[C@H](O)C3=C" A1JD0 SMILES CACTVS 3.385 "C[CH](CCCC(C)(C)N(O)O)[CH]1CC[CH]2C(CCC[C]12C)=CC=C3C[CH](O)C[CH](O)C3=C" A1JD0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](CCCC(C)(C)N(O)O)[C@H]1CC[C@@H]\2[C@@]1(CCC/C2=C\C=C/3\C[C@H](C[C@@H](C3=C)O)O)C" A1JD0 SMILES "OpenEye OEToolkits" 2.0.7 "CC(CCCC(C)(C)N(O)O)C1CCC2C1(CCCC2=CC=C3CC(CC(C3=C)O)O)C" # _pdbx_chem_comp_identifier.comp_id A1JD0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-1-[(2~{S})-6-[bis(oxidanyl)amino]-6-methyl-heptan-2-yl]-7~{a}-methyl-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JD0 "Create component" 2025-05-23 PDBE A1JD0 "Initial release" 2026-04-08 RCSB #