data_A1JD5 # _chem_comp.id A1JD5 _chem_comp.name "4-[4-[3-[5-[(3~{S})-4,4-dimethyl-3-oxidanyl-pentyl]-4-methyl-1,3-thiazol-2-yl]pentan-3-yl]phenoxy]-~{N}-oxidanyl-butanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H40 N2 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-05-29 _chem_comp.pdbx_modified_date 2025-09-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 476.672 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JD5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RCG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JD5 C4 C1 C 0 1 Y N N N N N -31.332 19.376 -5.986 -1.196 -0.936 -0.074 C4 A1JD5 1 A1JD5 C5 C2 C 0 1 Y N N N N N -31.755 18.139 -5.512 -0.830 -2.261 0.073 C5 A1JD5 2 A1JD5 C6 C3 C 0 1 Y N N N N N -33.089 17.992 -5.147 -1.798 -3.234 0.242 C6 A1JD5 3 A1JD5 C8 C4 C 0 1 N N N N N N -35.721 21.144 -5.290 -5.125 0.180 -0.015 C8 A1JD5 4 A1JD5 C13 C5 C 0 1 Y N N N N N -29.372 17.410 -5.664 1.475 -1.401 0.028 C13 A1JD5 5 A1JD5 C15 C6 C 0 1 Y N N N N N -27.385 18.175 -5.075 2.200 0.590 0.708 C15 A1JD5 6 A1JD5 C20 C7 C 0 1 N N S N N N -24.646 17.695 -9.371 6.472 2.166 -0.428 C20 A1JD5 7 A1JD5 C22 C8 C 0 1 N N N N N N -24.586 17.515 -10.904 7.745 1.933 0.388 C22 A1JD5 8 A1JD5 C24 C9 C 0 1 N N N N N N -25.936 17.861 -11.542 8.262 0.516 0.134 C24 A1JD5 9 A1JD5 C28 C10 C 0 1 N N N N N N -36.188 23.213 -6.681 -6.971 1.860 -0.132 C28 A1JD5 10 A1JD5 C1 C11 C 0 1 Y N N N N N -33.980 19.045 -5.256 -3.134 -2.883 0.265 C1 A1JD5 11 A1JD5 C12 C12 C 0 1 N N N N N N -30.816 16.936 -5.548 0.627 -2.646 0.047 C12 A1JD5 12 A1JD5 C16 C13 C 0 1 Y N N N N N -27.137 17.993 -6.431 3.044 0.463 -0.320 C16 A1JD5 13 A1JD5 C18 C14 C 0 1 N N N N N N -25.861 18.243 -7.195 4.094 1.462 -0.733 C18 A1JD5 14 A1JD5 C19 C15 C 0 1 N N N N N N -25.968 18.078 -8.721 5.405 1.152 -0.009 C19 A1JD5 15 A1JD5 C2 C16 C 0 1 Y N N N N N -33.540 20.269 -5.734 -3.504 -1.554 0.119 C2 A1JD5 16 A1JD5 C23 C17 C 0 1 N N N N N N -24.245 16.055 -11.193 8.812 2.947 -0.031 C23 A1JD5 17 A1JD5 C25 C18 C 0 1 N N N N N N -23.515 18.409 -11.525 7.436 2.105 1.877 C25 A1JD5 18 A1JD5 C27 C19 C 0 1 N N N N N N -37.317 24.144 -7.053 -8.465 2.052 -0.081 C27 A1JD5 19 A1JD5 C29 C20 C 0 1 N N N N N N -29.952 14.869 -4.281 0.547 -2.690 2.544 C29 A1JD5 20 A1JD5 C3 C21 C 0 1 Y N N N N N -32.214 20.436 -6.101 -2.531 -0.580 -0.045 C3 A1JD5 21 A1JD5 C30 C22 C 0 1 N N N N N N -30.942 16.010 -4.320 0.958 -3.470 1.294 C30 A1JD5 22 A1JD5 C31 C23 C 0 1 N N N N N N -32.410 15.272 -6.736 0.457 -2.707 -2.444 C31 A1JD5 23 A1JD5 C32 C24 C 0 1 N N N N N N -31.172 16.133 -6.823 0.913 -3.478 -1.204 C32 A1JD5 24 A1JD5 C33 C25 C 0 1 N N N N N N -26.418 18.730 -4.082 2.195 1.793 1.616 C33 A1JD5 25 A1JD5 C9 C26 C 0 1 N N N N N N -36.746 21.958 -6.026 -6.642 0.375 0.036 C9 A1JD5 26 A1JD5 N11 N1 N 0 1 N N N N N N -36.983 25.407 -7.206 -8.990 3.287 -0.208 N11 A1JD5 27 A1JD5 N14 N2 N 0 1 Y N N N N N -28.663 17.836 -4.674 1.378 -0.427 0.869 N14 A1JD5 28 A1JD5 O10 O1 O 0 1 N N N N N N -37.984 26.334 -7.480 -10.393 3.468 -0.161 O10 A1JD5 29 A1JD5 O21 O2 O 0 1 N N N N N N -23.569 18.510 -8.893 6.761 2.006 -1.818 O21 A1JD5 30 A1JD5 O26 O3 O 0 1 N N N N N N -38.474 23.741 -7.162 -9.194 1.096 0.073 O26 A1JD5 31 A1JD5 O7 O4 O 0 1 N N N N N N -34.426 21.307 -5.870 -4.818 -1.207 0.141 O7 A1JD5 32 A1JD5 S17 S1 S 0 1 Y N N N N N -28.565 17.379 -7.201 2.711 -1.077 -1.108 S17 A1JD5 33 A1JD5 H4 H1 H 0 1 N N N N N N -30.299 19.512 -6.269 -0.438 -0.178 -0.206 H4 A1JD5 34 A1JD5 H6 H2 H 0 1 N N N N N N -33.435 17.040 -4.772 -1.510 -4.268 0.355 H6 A1JD5 35 A1JD5 H8B H3 H 0 1 N N N N N N -36.005 20.082 -5.335 -4.746 0.530 -0.975 H8B A1JD5 36 A1JD5 H8A H4 H 0 1 N N N N N N -35.689 21.470 -4.240 -4.658 0.748 0.789 H8A A1JD5 37 A1JD5 H20 H5 H 0 1 N N N N N N -24.437 16.689 -8.979 6.104 3.176 -0.247 H20 A1JD5 38 A1JD5 H24A H6 H 0 0 N N N N N N -25.872 17.727 -12.632 8.482 0.394 -0.926 H24A A1JD5 39 A1JD5 H24B H7 H 0 0 N N N N N N -26.714 17.198 -11.136 9.169 0.350 0.716 H24B A1JD5 40 A1JD5 H24C H8 H 0 0 N N N N N N -26.191 18.907 -11.316 7.502 -0.207 0.433 H24C A1JD5 41 A1JD5 H28A H9 H 0 0 N N N N N N -35.512 23.722 -5.978 -6.592 2.210 -1.092 H28A A1JD5 42 A1JD5 H28B H10 H 0 0 N N N N N N -35.631 22.934 -7.588 -6.504 2.428 0.672 H28B A1JD5 43 A1JD5 H1 H11 H 0 1 N N N N N N -35.013 18.914 -4.970 -3.890 -3.643 0.397 H1 A1JD5 44 A1JD5 H18A H12 H 0 0 N N N N N N -25.535 19.273 -6.986 4.251 1.401 -1.810 H18A A1JD5 45 A1JD5 H18B H13 H 0 0 N N N N N N -25.101 17.537 -6.829 3.763 2.467 -0.471 H18B A1JD5 46 A1JD5 H19B H14 H 0 0 N N N N N N -26.706 17.292 -8.938 5.737 0.147 -0.271 H19B A1JD5 47 A1JD5 H19A H15 H 0 0 N N N N N N -26.309 19.030 -9.154 5.249 1.214 1.068 H19A A1JD5 48 A1JD5 H23B H16 H 0 0 N N N N N N -24.196 15.898 -12.281 8.444 3.957 0.149 H23B A1JD5 49 A1JD5 H23A H17 H 0 0 N N N N N N -23.272 15.810 -10.743 9.719 2.782 0.550 H23A A1JD5 50 A1JD5 H23C H18 H 0 0 N N N N N N -25.022 15.405 -10.764 9.032 2.825 -1.092 H23C A1JD5 51 A1JD5 H25A H19 H 0 0 N N N N N N -23.497 18.258 -12.614 6.676 1.383 2.175 H25A A1JD5 52 A1JD5 H25C H20 H 0 0 N N N N N N -23.744 19.462 -11.304 8.343 1.939 2.458 H25C A1JD5 53 A1JD5 H25B H21 H 0 0 N N N N N N -22.532 18.151 -11.103 7.068 3.115 2.057 H25B A1JD5 54 A1JD5 H29B H22 H 0 0 N N N N N N -30.119 14.269 -3.375 -0.501 -2.400 2.464 H29B A1JD5 55 A1JD5 H29A H23 H 0 0 N N N N N N -30.087 14.236 -5.170 0.683 -3.318 3.425 H29A A1JD5 56 A1JD5 H29C H24 H 0 0 N N N N N N -28.929 15.272 -4.270 1.165 -1.797 2.635 H29C A1JD5 57 A1JD5 H3 H25 H 0 1 N N N N N N -31.871 21.389 -6.475 -2.816 0.456 -0.159 H3 A1JD5 58 A1JD5 H30A H26 H 0 0 N N N N N N -31.956 15.583 -4.316 0.416 -4.414 1.260 H30A A1JD5 59 A1JD5 H30B H27 H 0 0 N N N N N N -30.797 16.619 -3.416 2.030 -3.667 1.325 H30B A1JD5 60 A1JD5 H31B H28 H 0 0 N N N N N N -32.563 14.752 -7.693 0.571 -3.337 -3.326 H31B A1JD5 61 A1JD5 H31C H29 H 0 0 N N N N N N -32.286 14.532 -5.932 -0.589 -2.423 -2.332 H31C A1JD5 62 A1JD5 H31A H30 H 0 0 N N N N N N -33.283 15.906 -6.519 1.066 -1.810 -2.558 H31A A1JD5 63 A1JD5 H32B H31 H 0 0 N N N N N N -30.321 15.477 -7.057 1.982 -3.676 -1.272 H32B A1JD5 64 A1JD5 H32A H32 H 0 0 N N N N N N -31.318 16.851 -7.644 0.371 -4.422 -1.145 H32A A1JD5 65 A1JD5 H33B H33 H 0 0 N N N N N N -26.901 18.794 -3.096 1.512 2.545 1.219 H33B A1JD5 66 A1JD5 H33C H34 H 0 0 N N N N N N -25.540 18.071 -4.018 1.868 1.496 2.612 H33C A1JD5 67 A1JD5 H33A H35 H 0 0 N N N N N N -26.101 19.734 -4.401 3.200 2.210 1.673 H33A A1JD5 68 A1JD5 H9B H36 H 0 1 N N N N N N -37.190 21.327 -6.810 -7.109 -0.193 -0.768 H9B A1JD5 69 A1JD5 H9A H37 H 0 1 N N N N N N -37.526 22.259 -5.312 -7.021 0.025 0.996 H9A A1JD5 70 A1JD5 H11 H38 H 0 1 N N N N N N -36.029 25.695 -7.127 -8.406 4.052 -0.332 H11 A1JD5 71 A1JD5 H10 H39 H 0 1 N N N N N N -38.823 25.890 -7.528 -10.675 4.387 -0.261 H10 A1JD5 72 A1JD5 H21 H40 H 0 1 N N N N N N -22.760 18.247 -9.316 7.094 1.128 -2.052 H21 A1JD5 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JD5 C29 C30 SING N N 1 A1JD5 C12 C30 SING N N 2 A1JD5 C31 C32 SING N N 3 A1JD5 C12 C32 SING N N 4 A1JD5 C15 C33 SING N N 5 A1JD5 C1 C2 DOUB Y N 6 A1JD5 C2 C3 SING Y N 7 A1JD5 C3 C4 DOUB Y N 8 A1JD5 C4 C5 SING Y N 9 A1JD5 C5 C6 DOUB Y N 10 A1JD5 C6 C1 SING Y N 11 A1JD5 C2 O7 SING N N 12 A1JD5 O7 C8 SING N N 13 A1JD5 C9 C8 SING N N 14 A1JD5 C28 C9 SING N N 15 A1JD5 N11 O10 SING N N 16 A1JD5 C27 N11 SING N N 17 A1JD5 C5 C12 SING N N 18 A1JD5 C12 C13 SING N N 19 A1JD5 C13 N14 DOUB Y N 20 A1JD5 N14 C15 SING Y N 21 A1JD5 C15 C16 DOUB Y N 22 A1JD5 C16 S17 SING Y N 23 A1JD5 S17 C13 SING Y N 24 A1JD5 C16 C18 SING N N 25 A1JD5 C18 C19 SING N N 26 A1JD5 C19 C20 SING N N 27 A1JD5 C20 O21 SING N N 28 A1JD5 C20 C22 SING N N 29 A1JD5 C22 C23 SING N N 30 A1JD5 C22 C24 SING N N 31 A1JD5 C22 C25 SING N N 32 A1JD5 C27 O26 DOUB N N 33 A1JD5 C28 C27 SING N N 34 A1JD5 C4 H4 SING N N 35 A1JD5 C6 H6 SING N N 36 A1JD5 C8 H8B SING N N 37 A1JD5 C8 H8A SING N N 38 A1JD5 C20 H20 SING N N 39 A1JD5 C24 H24A SING N N 40 A1JD5 C24 H24B SING N N 41 A1JD5 C24 H24C SING N N 42 A1JD5 C28 H28A SING N N 43 A1JD5 C28 H28B SING N N 44 A1JD5 C1 H1 SING N N 45 A1JD5 C18 H18A SING N N 46 A1JD5 C18 H18B SING N N 47 A1JD5 C19 H19B SING N N 48 A1JD5 C19 H19A SING N N 49 A1JD5 C23 H23B SING N N 50 A1JD5 C23 H23A SING N N 51 A1JD5 C23 H23C SING N N 52 A1JD5 C25 H25A SING N N 53 A1JD5 C25 H25C SING N N 54 A1JD5 C25 H25B SING N N 55 A1JD5 C29 H29B SING N N 56 A1JD5 C29 H29A SING N N 57 A1JD5 C29 H29C SING N N 58 A1JD5 C3 H3 SING N N 59 A1JD5 C30 H30A SING N N 60 A1JD5 C30 H30B SING N N 61 A1JD5 C31 H31B SING N N 62 A1JD5 C31 H31C SING N N 63 A1JD5 C31 H31A SING N N 64 A1JD5 C32 H32B SING N N 65 A1JD5 C32 H32A SING N N 66 A1JD5 C33 H33B SING N N 67 A1JD5 C33 H33C SING N N 68 A1JD5 C33 H33A SING N N 69 A1JD5 C9 H9B SING N N 70 A1JD5 C9 H9A SING N N 71 A1JD5 N11 H11 SING N N 72 A1JD5 O10 H10 SING N N 73 A1JD5 O21 H21 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JD5 InChI InChI 1.06 "InChI=1S/C26H40N2O4S/c1-7-26(8-2,19-11-13-20(14-12-19)32-17-9-10-23(30)28-31)24-27-18(3)21(33-24)15-16-22(29)25(4,5)6/h11-14,22,29,31H,7-10,15-17H2,1-6H3,(H,28,30)/t22-/m0/s1" A1JD5 InChIKey InChI 1.06 CHEHAHOVAVDOHQ-QFIPXVFZSA-N A1JD5 SMILES_CANONICAL CACTVS 3.385 "CCC(CC)(c1ccc(OCCCC(=O)NO)cc1)c2sc(CC[C@H](O)C(C)(C)C)c(C)n2" A1JD5 SMILES CACTVS 3.385 "CCC(CC)(c1ccc(OCCCC(=O)NO)cc1)c2sc(CC[CH](O)C(C)(C)C)c(C)n2" A1JD5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(CC)(c1ccc(cc1)OCCCC(=O)NO)c2nc(c(s2)CC[C@@H](C(C)(C)C)O)C" A1JD5 SMILES "OpenEye OEToolkits" 2.0.7 "CCC(CC)(c1ccc(cc1)OCCCC(=O)NO)c2nc(c(s2)CCC(C(C)(C)C)O)C" # _pdbx_chem_comp_identifier.comp_id A1JD5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[4-[3-[5-[(3~{S})-4,4-dimethyl-3-oxidanyl-pentyl]-4-methyl-1,3-thiazol-2-yl]pentan-3-yl]phenoxy]-~{N}-oxidanyl-butanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JD5 "Create component" 2025-05-29 PDBE A1JD5 "Initial release" 2025-10-01 RCSB #