data_A1JDI # _chem_comp.id A1JDI _chem_comp.name "(1~{R},2~{a}~{R},8~{b}~{R})-8-fluoranyl-3-oxidanyl-1,2,2~{a},8~{b}-tetrahydrocyclobuta[c][1,2]benzoxaborinine-1-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H9 B F N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-05-16 _chem_comp.pdbx_modified_date 2026-03-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 217.004 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JDI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9R8F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JDI C10 C1 C 0 1 N N R N N N -4.603 -0.892 19.007 1.404 -1.160 -0.242 C10 A1JDI 1 A1JDI C15 C2 C 0 1 N N R N N N -6.604 -1.691 18.279 1.732 0.723 0.694 C15 A1JDI 2 A1JDI B09 B1 B 0 1 N N N N N N -3.162 -0.975 18.820 0.261 -2.252 -0.281 B09 A1JDI 3 A1JDI C01 C3 C 0 1 Y N N N N N -5.139 -1.550 14.161 -2.590 1.783 -0.079 C01 A1JDI 4 A1JDI C02 C4 C 0 1 Y N N N N N -3.848 -2.080 14.126 -3.351 0.709 0.342 C02 A1JDI 5 A1JDI C03 C5 C 0 1 Y N N N N N -3.103 -2.161 15.306 -2.780 -0.556 0.528 C03 A1JDI 6 A1JDI C04 C6 C 0 1 Y N N N N N -3.638 -1.721 16.520 -1.420 -0.729 0.281 C04 A1JDI 7 A1JDI C05 C7 C 0 1 Y N N N N N -4.930 -1.185 16.545 -0.636 0.375 -0.160 C05 A1JDI 8 A1JDI C06 C8 C 0 1 Y N N N N N -5.682 -1.104 15.365 -1.241 1.616 -0.329 C06 A1JDI 9 A1JDI C07 C9 C 0 1 N N R N N N -5.559 -0.680 17.801 0.834 0.251 -0.458 C07 A1JDI 10 A1JDI C14 C10 C 0 1 N N N N N N -5.619 -1.963 19.417 1.728 -0.729 1.199 C14 A1JDI 11 A1JDI C16 C11 C 0 1 N N N N N N -7.784 -1.054 19.022 3.057 1.189 0.253 C16 A1JDI 12 A1JDI F12 F1 F 0 1 N N N N N N -6.841 -0.627 15.403 -0.502 2.670 -0.741 F12 A1JDI 13 A1JDI N17 N1 N 0 1 N N N N N N -8.683 -0.557 19.577 4.080 1.548 -0.087 N17 A1JDI 14 A1JDI O08 O1 O 0 1 N N N N N N -2.906 -1.789 17.701 -0.904 -1.970 0.491 O08 A1JDI 15 A1JDI O11 O2 O 0 1 N N N N N N -2.710 0.345 18.545 0.388 -3.444 -1.042 O11 A1JDI 16 A1JDI H101 H1 H 0 0 N N N N N N -4.783 -0.039 19.678 2.271 -1.405 -0.855 H101 A1JDI 17 A1JDI H151 H2 H 0 0 N N N N N N -6.833 -2.529 17.605 1.242 1.421 1.372 H151 A1JDI 18 A1JDI H011 H3 H 0 0 N N N N N N -5.719 -1.485 13.252 -3.049 2.751 -0.214 H011 A1JDI 19 A1JDI H021 H4 H 0 0 N N N N N N -3.427 -2.425 13.193 -4.406 0.835 0.535 H021 A1JDI 20 A1JDI H031 H5 H 0 0 N N N N N N -2.103 -2.568 15.279 -3.398 -1.378 0.858 H031 A1JDI 21 A1JDI H071 H6 H 0 0 N N N N N N -5.944 0.348 17.730 1.103 0.687 -1.420 H071 A1JDI 22 A1JDI H141 H7 H 0 0 N N N N N N -6.055 -1.778 20.410 0.927 -0.941 1.907 H141 A1JDI 23 A1JDI H142 H8 H 0 0 N N N N N N -5.201 -2.980 19.384 2.703 -1.071 1.547 H142 A1JDI 24 A1JDI H111 H9 H 0 0 N N N N N N -2.339 0.378 17.671 -0.379 -4.031 -0.983 H111 A1JDI 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JDI C02 C01 DOUB Y N 1 A1JDI C02 C03 SING Y N 2 A1JDI C01 C06 SING Y N 3 A1JDI C03 C04 DOUB Y N 4 A1JDI C06 F12 SING N N 5 A1JDI C06 C05 DOUB Y N 6 A1JDI C04 C05 SING Y N 7 A1JDI C04 O08 SING N N 8 A1JDI C05 C07 SING N N 9 A1JDI O08 B09 SING N N 10 A1JDI C07 C15 SING N N 11 A1JDI C07 C10 SING N N 12 A1JDI C15 C16 SING N N 13 A1JDI C15 C14 SING N N 14 A1JDI O11 B09 SING N N 15 A1JDI B09 C10 SING N N 16 A1JDI C10 C14 SING N N 17 A1JDI C16 N17 TRIP N N 18 A1JDI C10 H101 SING N N 19 A1JDI C15 H151 SING N N 20 A1JDI C01 H011 SING N N 21 A1JDI C02 H021 SING N N 22 A1JDI C03 H031 SING N N 23 A1JDI C07 H071 SING N N 24 A1JDI C14 H141 SING N N 25 A1JDI C14 H142 SING N N 26 A1JDI O11 H111 SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JDI InChI InChI 1.06 "InChI=1S/C11H9BFNO2/c13-8-2-1-3-9-11(8)10-6(5-14)4-7(10)12(15)16-9/h1-3,6-7,10,15H,4H2/t6-,7+,10-/m0/s1" A1JDI InChIKey InChI 1.06 HJELYBQKKZFUDV-PJKMHFRUSA-N A1JDI SMILES_CANONICAL CACTVS 3.385 "OB1Oc2cccc(F)c2[C@H]3[C@@H](C[C@@H]13)C#N" A1JDI SMILES CACTVS 3.385 "OB1Oc2cccc(F)c2[CH]3[CH](C[CH]13)C#N" A1JDI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "B1([C@@H]2C[C@H]([C@@H]2c3c(cccc3F)O1)C#N)O" A1JDI SMILES "OpenEye OEToolkits" 2.0.7 "B1(C2CC(C2c3c(cccc3F)O1)C#N)O" # _pdbx_chem_comp_identifier.comp_id A1JDI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{R},2~{a}~{R},8~{b}~{R})-8-fluoranyl-3-oxidanyl-1,2,2~{a},8~{b}-tetrahydrocyclobuta[c][1,2]benzoxaborinine-1-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JDI "Create component" 2025-05-16 PDBE A1JDI "Initial release" 2026-03-25 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1JDI _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom B09 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #