data_A1JDJ # _chem_comp.id A1JDJ _chem_comp.name "2-(1-methylimidazol-2-yl)ethyl (2~{S})-3-[(5-chloranylthiophen-2-yl)carbonylamino]-2-[[2-ethyl-3-[(3~{S})-3-oxidanyl-2-oxidanylidene-pyrrolidin-1-yl]phenyl]sulfonylamino]propanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H30 Cl N5 O7 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-05-16 _chem_comp.pdbx_modified_date 2025-06-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 624.129 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JDJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9R8R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JDJ N1 N1 N 0 1 N N N N N N 6.867 3.165 19.322 3.734 3.272 0.117 N1 A1JDJ 1 A1JDJ N3 N2 N 0 1 Y N N N N N 6.472 11.744 20.143 4.888 -5.145 0.962 N3 A1JDJ 2 A1JDJ C4 C1 C 0 1 Y N N N N N 6.032 4.228 19.779 2.570 2.829 0.753 C4 A1JDJ 3 A1JDJ C5 C2 C 0 1 Y N N N N N 5.537 4.216 21.087 1.454 2.484 0.002 C5 A1JDJ 4 A1JDJ C6 C3 C 0 1 N N N N N N 5.889 3.062 22.001 1.496 2.586 -1.501 C6 A1JDJ 5 A1JDJ C7 C4 C 0 1 N N N N N N 4.880 1.940 21.986 1.948 1.248 -2.090 C7 A1JDJ 6 A1JDJ C8 C5 C 0 1 Y N N N N N 4.713 5.285 21.516 0.306 2.048 0.634 C8 A1JDJ 7 A1JDJ C10 C6 C 0 1 N N N N N N 6.705 7.580 22.807 0.624 -1.747 -0.489 C10 A1JDJ 8 A1JDJ C13 C7 C 0 1 Y N N N N N 7.575 10.914 20.129 3.721 -5.398 0.332 C13 A1JDJ 9 A1JDJ C15 C8 C 0 1 Y N N N N N 6.942 13.011 20.467 5.847 -5.917 0.362 C15 A1JDJ 10 A1JDJ C17 C9 C 0 1 N N N N N N 5.713 8.483 24.948 -1.842 -2.005 -0.557 C17 A1JDJ 11 A1JDJ C20 C10 C 0 1 Y N N N N N 11.429 7.332 27.147 -7.438 0.206 0.304 C20 A1JDJ 12 A1JDJ C21 C11 C 0 1 Y N N N N N 10.434 6.883 28.014 -7.817 -0.950 -0.258 C21 A1JDJ 13 A1JDJ C22 C12 C 0 1 Y N N N N N 9.159 7.181 27.542 -6.789 -1.786 -0.620 C22 A1JDJ 14 A1JDJ C24 C13 C 0 1 Y N N N N N 4.934 6.318 19.353 1.376 2.297 2.764 C24 A1JDJ 15 A1JDJ C26 C14 C 0 1 N N N N N N 6.458 1.934 18.901 4.004 4.558 -0.163 C26 A1JDJ 16 A1JDJ C1 C15 C 0 1 N N S N N N 7.698 1.110 18.589 5.353 4.673 -0.837 C1 A1JDJ 17 A1JDJ C11 C16 C 0 1 N N N N N N 7.867 8.630 21.024 2.215 -3.490 -0.164 C11 A1JDJ 18 A1JDJ C12 C17 C 0 1 N N N N N N 7.501 9.461 19.823 2.391 -4.768 0.660 C12 A1JDJ 19 A1JDJ C14 C18 C 0 1 N N N N N N 5.075 11.407 19.875 5.092 -4.214 2.074 C14 A1JDJ 20 A1JDJ C16 C19 C 0 1 Y N N N N N 8.278 12.894 20.628 5.233 -6.614 -0.612 C16 A1JDJ 21 A1JDJ C18 C20 C 0 1 N N N N N N 8.097 8.488 25.519 -4.277 -1.944 -0.610 C18 A1JDJ 22 A1JDJ C19 C21 C 0 1 Y N N N N N 9.181 7.913 26.354 -5.552 -1.278 -0.337 C19 A1JDJ 23 A1JDJ C2 C22 C 0 1 N N N N N N 8.809 2.138 18.513 6.038 3.316 -0.548 C2 A1JDJ 24 A1JDJ C23 C23 C 0 1 Y N N N N N 4.424 6.324 20.639 0.266 1.954 2.013 C23 A1JDJ 25 A1JDJ C25 C24 C 0 1 Y N N N N N 5.733 5.273 18.920 2.529 2.729 2.138 C25 A1JDJ 26 A1JDJ C3 C25 C 0 1 N N N N N N 8.329 3.261 19.407 4.822 2.391 -0.326 C3 A1JDJ 27 A1JDJ C9 C26 C 0 1 N N S N N N 5.472 7.630 23.698 -0.689 -1.060 -0.213 C9 A1JDJ 28 A1JDJ N2 N3 N 0 1 N N N N N N 5.079 6.259 24.046 -0.789 0.150 -1.033 N2 A1JDJ 29 A1JDJ N4 N4 N 0 1 Y N N N N N 8.679 11.588 20.421 3.934 -6.277 -0.608 N4 A1JDJ 30 A1JDJ N5 N5 N 0 1 N N N N N N 6.862 8.021 25.721 -3.118 -1.339 -0.284 N5 A1JDJ 31 A1JDJ O1 O1 O 0 1 N N N N N N 7.560 0.423 17.359 6.106 5.747 -0.271 O1 A1JDJ 32 A1JDJ O2 O2 O 0 1 N N N N N N 3.915 4.133 23.749 -2.162 1.380 0.609 O2 A1JDJ 33 A1JDJ O3 O3 O 0 1 N N N N N N 2.850 6.246 23.057 -1.196 2.561 -1.371 O3 A1JDJ 34 A1JDJ O4 O4 O 0 1 N N N N N N 6.739 8.590 21.941 0.934 -2.884 0.153 O4 A1JDJ 35 A1JDJ O5 O5 O 0 1 N N N N N N 7.532 6.713 22.886 1.396 -1.274 -1.289 O5 A1JDJ 36 A1JDJ O6 O6 O 0 1 N N N N N N 8.354 9.380 24.705 -4.264 -3.043 -1.132 O6 A1JDJ 37 A1JDJ O7 O7 O 0 1 N N N N N N 5.300 1.569 18.802 3.272 5.492 0.089 O7 A1JDJ 38 A1JDJ S1 S1 S 0 1 N N N N N N 4.020 5.428 23.144 -1.110 1.610 -0.319 S1 A1JDJ 39 A1JDJ S2 S2 S 0 1 Y N N N N N 10.800 8.213 25.817 -5.738 0.307 0.402 S2 A1JDJ 40 A1JDJ CL1 CL1 CL 0 0 N N N N N N 13.126 7.101 27.306 -8.531 1.439 0.851 CL1 A1JDJ 41 A1JDJ H1 H1 H 0 1 N N N N N N 6.862 2.657 21.688 0.503 2.831 -1.876 H1 A1JDJ 42 A1JDJ H2 H2 H 0 1 N N N N N N 5.965 3.445 23.029 2.198 3.367 -1.793 H2 A1JDJ 43 A1JDJ H3 H3 H 0 1 N N N N N N 5.206 1.144 22.672 2.156 1.370 -3.153 H3 A1JDJ 44 A1JDJ H4 H4 H 0 1 N N N N N N 3.901 2.323 22.308 2.850 0.912 -1.579 H4 A1JDJ 45 A1JDJ H5 H5 H 0 1 N N N N N N 4.798 1.535 20.967 1.159 0.508 -1.957 H5 A1JDJ 46 A1JDJ H6 H6 H 0 1 N N N N N N 6.355 13.912 20.570 6.894 -5.958 0.622 H6 A1JDJ 47 A1JDJ H7 H7 H 0 1 N N N N N N 5.891 9.523 24.638 -1.790 -2.272 -1.612 H7 A1JDJ 48 A1JDJ H8 H8 H 0 1 N N N N N N 4.817 8.438 25.585 -1.765 -2.907 0.051 H8 A1JDJ 49 A1JDJ H9 H9 H 0 1 N N N N N N 10.629 6.365 28.942 -8.855 -1.206 -0.414 H9 A1JDJ 50 A1JDJ H10 H10 H 0 1 N N N N N N 8.250 6.878 28.041 -6.943 -2.750 -1.082 H10 A1JDJ 51 A1JDJ H11 H11 H 0 1 N N N N N N 4.708 7.134 18.682 1.342 2.224 3.841 H11 A1JDJ 52 A1JDJ H12 H12 H 0 1 N N N N N N 7.895 0.411 19.415 5.232 4.817 -1.911 H12 A1JDJ 53 A1JDJ H13 H13 H 0 1 N N N N N N 8.116 7.608 20.702 3.017 -2.792 0.074 H13 A1JDJ 54 A1JDJ H14 H14 H 0 1 N N N N N N 8.736 9.077 21.529 2.249 -3.735 -1.225 H14 A1JDJ 55 A1JDJ H15 H15 H 0 1 N N N N N N 6.475 9.212 19.514 1.589 -5.467 0.422 H15 A1JDJ 56 A1JDJ H16 H16 H 0 1 N N N N N N 8.197 9.232 19.003 2.357 -4.524 1.722 H16 A1JDJ 57 A1JDJ H17 H17 H 0 1 N N N N N N 4.454 12.310 19.973 5.334 -3.226 1.682 H17 A1JDJ 58 A1JDJ H18 H18 H 0 1 N N N N N N 4.984 11.008 18.854 4.181 -4.155 2.670 H18 A1JDJ 59 A1JDJ H19 H19 H 0 1 N N N N N N 4.736 10.649 20.597 5.912 -4.568 2.699 H19 A1JDJ 60 A1JDJ H20 H20 H 0 1 N N N N N N 8.941 13.708 20.883 5.703 -7.320 -1.280 H20 A1JDJ 61 A1JDJ H21 H21 H 0 1 N N N N N N 9.756 1.719 18.885 6.628 2.987 -1.403 H21 A1JDJ 62 A1JDJ H22 H22 H 0 1 N N N N N N 8.945 2.491 17.480 6.653 3.374 0.350 H22 A1JDJ 63 A1JDJ H23 H23 H 0 1 N N N N N N 3.797 7.141 20.964 -0.634 1.617 2.504 H23 A1JDJ 64 A1JDJ H24 H24 H 0 1 N N N N N N 6.123 5.273 17.913 3.395 2.997 2.725 H24 A1JDJ 65 A1JDJ H25 H25 H 0 1 N N N N N N 8.673 3.115 20.441 5.049 1.655 0.445 H25 A1JDJ 66 A1JDJ H26 H26 H 0 1 N N N N N N 8.681 4.235 19.038 4.548 1.892 -1.256 H26 A1JDJ 67 A1JDJ H27 H27 H 0 1 N N N N N N 4.657 8.095 23.124 -0.743 -0.790 0.842 H27 A1JDJ 68 A1JDJ H28 H28 H 0 1 N N N N N N 4.693 6.301 24.967 -0.667 0.097 -1.993 H28 A1JDJ 69 A1JDJ H29 H29 H 0 1 N N N N N N 6.719 7.329 26.428 -3.128 -0.463 0.132 H29 A1JDJ 70 A1JDJ H30 H30 H 0 1 N N N N N N 6.644 0.406 17.106 5.692 6.615 -0.374 H30 A1JDJ 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JDJ O1 C1 SING N N 1 A1JDJ C2 C1 SING N N 2 A1JDJ C2 C3 SING N N 3 A1JDJ C1 C26 SING N N 4 A1JDJ O7 C26 DOUB N N 5 A1JDJ C26 N1 SING N N 6 A1JDJ C25 C24 DOUB Y N 7 A1JDJ C25 C4 SING Y N 8 A1JDJ N1 C3 SING N N 9 A1JDJ N1 C4 SING N N 10 A1JDJ C24 C23 SING Y N 11 A1JDJ C4 C5 DOUB Y N 12 A1JDJ C12 C13 SING N N 13 A1JDJ C12 C11 SING N N 14 A1JDJ C14 N3 SING N N 15 A1JDJ C13 N3 SING Y N 16 A1JDJ C13 N4 DOUB Y N 17 A1JDJ N3 C15 SING Y N 18 A1JDJ N4 C16 SING Y N 19 A1JDJ C15 C16 DOUB Y N 20 A1JDJ C23 C8 DOUB Y N 21 A1JDJ C11 O4 SING N N 22 A1JDJ C5 C8 SING Y N 23 A1JDJ C5 C6 SING N N 24 A1JDJ C8 S1 SING N N 25 A1JDJ O4 C10 SING N N 26 A1JDJ C7 C6 SING N N 27 A1JDJ C10 O5 DOUB N N 28 A1JDJ C10 C9 SING N N 29 A1JDJ O3 S1 DOUB N N 30 A1JDJ S1 O2 DOUB N N 31 A1JDJ S1 N2 SING N N 32 A1JDJ C9 N2 SING N N 33 A1JDJ C9 C17 SING N N 34 A1JDJ O6 C18 DOUB N N 35 A1JDJ C17 N5 SING N N 36 A1JDJ C18 N5 SING N N 37 A1JDJ C18 C19 SING N N 38 A1JDJ S2 C19 SING Y N 39 A1JDJ S2 C20 SING Y N 40 A1JDJ C19 C22 DOUB Y N 41 A1JDJ C20 CL1 SING N N 42 A1JDJ C20 C21 DOUB Y N 43 A1JDJ C22 C21 SING Y N 44 A1JDJ C6 H1 SING N N 45 A1JDJ C6 H2 SING N N 46 A1JDJ C7 H3 SING N N 47 A1JDJ C7 H4 SING N N 48 A1JDJ C7 H5 SING N N 49 A1JDJ C15 H6 SING N N 50 A1JDJ C17 H7 SING N N 51 A1JDJ C17 H8 SING N N 52 A1JDJ C21 H9 SING N N 53 A1JDJ C22 H10 SING N N 54 A1JDJ C24 H11 SING N N 55 A1JDJ C1 H12 SING N N 56 A1JDJ C11 H13 SING N N 57 A1JDJ C11 H14 SING N N 58 A1JDJ C12 H15 SING N N 59 A1JDJ C12 H16 SING N N 60 A1JDJ C14 H17 SING N N 61 A1JDJ C14 H18 SING N N 62 A1JDJ C14 H19 SING N N 63 A1JDJ C16 H20 SING N N 64 A1JDJ C2 H21 SING N N 65 A1JDJ C2 H22 SING N N 66 A1JDJ C23 H23 SING N N 67 A1JDJ C25 H24 SING N N 68 A1JDJ C3 H25 SING N N 69 A1JDJ C3 H26 SING N N 70 A1JDJ C9 H27 SING N N 71 A1JDJ N2 H28 SING N N 72 A1JDJ N5 H29 SING N N 73 A1JDJ O1 H30 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JDJ InChI InChI 1.06 "InChI=1S/C26H30ClN5O7S2/c1-3-16-18(32-12-9-19(33)25(32)35)5-4-6-21(16)41(37,38)30-17(15-29-24(34)20-7-8-22(27)40-20)26(36)39-14-10-23-28-11-13-31(23)2/h4-8,11,13,17,19,30,33H,3,9-10,12,14-15H2,1-2H3,(H,29,34)/t17-,19-/m0/s1" A1JDJ InChIKey InChI 1.06 UHRIYOJEACOYON-HKUYNNGSSA-N A1JDJ SMILES_CANONICAL CACTVS 3.385 "CCc1c(cccc1[S](=O)(=O)N[C@@H](CNC(=O)c2sc(Cl)cc2)C(=O)OCCc3nccn3C)N4CC[C@H](O)C4=O" A1JDJ SMILES CACTVS 3.385 "CCc1c(cccc1[S](=O)(=O)N[CH](CNC(=O)c2sc(Cl)cc2)C(=O)OCCc3nccn3C)N4CC[CH](O)C4=O" A1JDJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCc1c(cccc1S(=O)(=O)N[C@@H](CNC(=O)c2ccc(s2)Cl)C(=O)OCCc3nccn3C)N4CC[C@@H](C4=O)O" A1JDJ SMILES "OpenEye OEToolkits" 2.0.7 "CCc1c(cccc1S(=O)(=O)NC(CNC(=O)c2ccc(s2)Cl)C(=O)OCCc3nccn3C)N4CCC(C4=O)O" # _pdbx_chem_comp_identifier.comp_id A1JDJ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-(1-methylimidazol-2-yl)ethyl (2~{S})-3-[(5-chloranylthiophen-2-yl)carbonylamino]-2-[[2-ethyl-3-[(3~{S})-3-oxidanyl-2-oxidanylidene-pyrrolidin-1-yl]phenyl]sulfonylamino]propanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JDJ "Create component" 2025-05-16 PDBE A1JDJ "Initial release" 2025-06-18 RCSB #