data_A1JDN # _chem_comp.id A1JDN _chem_comp.name "Dipalmitoyl Phosphatidylinositol 3,5-bisphosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C41 H81 O19 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[(2~{R})-2-hexadecanoyloxy-3-[oxidanyl-[(2~{R},3~{S},5~{R},6~{R})-2,4,6-tris(oxidanyl)-3,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] hexadecanoate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-05-19 _chem_comp.pdbx_modified_date 2026-09-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 970.992 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JDN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9R8N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JDN C3 C1 C 0 1 N N N N N N 154.732 181.246 187.362 4.359 1.093 -3.067 C3 A1JDN 1 A1JDN C4 C2 C 0 1 N N N N N N 155.277 180.723 188.656 5.196 1.593 -1.917 C4 A1JDN 2 A1JDN C5 C3 C 0 1 N N N N N N 156.137 181.727 189.407 6.672 1.308 -2.199 C5 A1JDN 3 A1JDN C6 C4 C 0 1 N N N N N N 157.617 181.584 189.106 7.522 1.816 -1.032 C6 A1JDN 4 A1JDN C7 C5 C 0 1 N N N N N N 158.104 182.472 187.976 8.998 1.531 -1.314 C7 A1JDN 5 A1JDN C10 C6 C 0 1 N N N N N N 160.059 185.592 189.148 12.173 2.261 0.739 C10 A1JDN 6 A1JDN C12 C7 C 0 1 N N N N N N 162.067 186.255 190.576 14.499 2.484 1.624 C12 A1JDN 7 A1JDN C13 C8 C 0 1 N N N N N N 163.459 185.777 190.954 15.976 2.199 1.342 C13 A1JDN 8 A1JDN C16 C9 C 0 1 N N N N N N 165.817 188.523 189.469 19.150 2.929 3.394 C16 A1JDN 9 A1JDN C17 C10 C 0 1 N N N N N N 165.669 190.013 189.196 20.627 2.644 3.112 C17 A1JDN 10 A1JDN C18 C11 C 0 1 N N N N N N 164.357 190.600 189.673 21.476 3.151 4.280 C18 A1JDN 11 A1JDN O21 O1 O 0 1 N N N N N N 153.748 184.556 186.142 0.135 1.369 -3.225 O21 A1JDN 12 A1JDN C14 C12 C 0 1 N N N N N N 164.572 186.400 190.128 16.825 2.706 2.509 C14 A1JDN 13 A1JDN C20 C13 C 0 1 N N N N N N 152.611 183.824 186.652 1.012 1.558 -4.367 C20 A1JDN 14 A1JDN C22 C14 C 0 1 N N N N N N 153.682 185.886 186.154 -1.031 2.034 -3.236 C22 A1JDN 15 A1JDN C27 C15 C 0 1 N N N N N N 157.379 188.584 184.024 -6.427 3.302 -0.268 C27 A1JDN 16 A1JDN C26 C16 C 0 1 N N N N N N 157.628 187.106 184.268 -5.451 3.451 -1.437 C26 A1JDN 17 A1JDN C25 C17 C 0 1 N N N N N N 156.576 186.202 183.651 -4.210 2.595 -1.177 C25 A1JDN 18 A1JDN C24 C18 C 0 1 N N N N N N 155.658 185.522 184.653 -3.234 2.743 -2.345 C24 A1JDN 19 A1JDN C23 C19 C 0 1 N N N N N N 154.929 186.488 185.578 -1.992 1.887 -2.085 C23 A1JDN 20 A1JDN C8 C20 C 0 1 N N N N N N 158.301 183.925 188.371 9.847 2.038 -0.147 C8 A1JDN 21 A1JDN C1 C21 C 0 1 N N R N N N 152.872 182.372 186.358 2.283 0.727 -4.177 C1 A1JDN 22 A1JDN C11 C22 C 0 1 N N N N N N 161.570 185.702 189.252 13.650 1.976 0.457 C11 A1JDN 23 A1JDN C15 C23 C 0 1 N N N N N N 164.683 187.907 190.274 18.301 2.421 2.227 C15 A1JDN 24 A1JDN C28 C24 C 0 1 N N N N N N 158.603 189.345 183.549 -7.668 4.158 -0.528 C28 A1JDN 25 A1JDN C29 C25 C 0 1 N N N N N N 158.444 190.852 183.607 -8.644 4.009 0.641 C29 A1JDN 26 A1JDN C30 C26 C 0 1 N N N N N N 159.387 191.613 182.695 -9.886 4.865 0.380 C30 A1JDN 27 A1JDN C31 C27 C 0 1 N N N N N N 158.678 192.489 181.680 -10.862 4.717 1.549 C31 A1JDN 28 A1JDN C32 C28 C 0 1 N N N N N N 158.740 193.972 182.001 -12.103 5.573 1.289 C32 A1JDN 29 A1JDN C33 C29 C 0 1 N N N N N N 159.152 194.841 180.824 -13.079 5.424 2.458 C33 A1JDN 30 A1JDN C34 C30 C 0 1 N N N N N N 158.145 194.855 179.687 -14.320 6.280 2.198 C34 A1JDN 31 A1JDN C35 C31 C 0 1 N N N N N N 158.658 195.513 178.417 -15.297 6.131 3.366 C35 A1JDN 32 A1JDN C36 C32 C 0 1 N N N N N N 157.574 195.837 177.403 -16.538 6.987 3.106 C36 A1JDN 33 A1JDN C37 C33 C 0 1 N N N N N N 158.096 196.581 176.194 -17.514 6.839 4.275 C37 A1JDN 34 A1JDN C39 C34 C 0 1 N N N N N N 151.603 181.614 186.061 1.904 -0.735 -3.934 C39 A1JDN 35 A1JDN C44 C35 C 0 1 N N N N N N 147.716 180.982 185.945 -1.473 -2.935 -0.525 C44 A1JDN 36 A1JDN C45 C36 C 0 1 N N S N N N 147.341 182.072 186.944 -1.184 -2.979 0.977 C45 A1JDN 37 A1JDN C46 C37 C 0 1 N N S N N N 146.072 182.790 186.500 -2.031 -4.075 1.627 C46 A1JDN 38 A1JDN C47 C38 C 0 1 N N N N N N 146.217 183.355 185.095 -3.514 -3.774 1.401 C47 A1JDN 39 A1JDN C48 C39 C 0 1 N N R N N N 146.531 182.195 184.163 -3.803 -3.730 -0.101 C48 A1JDN 40 A1JDN C49 C40 C 0 1 N N R N N N 147.853 181.542 184.537 -2.956 -2.635 -0.751 C49 A1JDN 41 A1JDN C9 C41 C 0 1 N N N N N N 159.546 184.164 189.205 11.324 1.754 -0.429 C9 A1JDN 42 A1JDN O19 O2 O 0 1 N N N N N N 155.297 181.186 186.303 4.890 0.564 -4.015 O19 A1JDN 43 A1JDN O2 O3 O 0 1 N N N N N N 153.519 181.794 187.532 3.025 1.232 -3.036 O2 A1JDN 44 A1JDN O38 O4 O 0 1 N N N N N N 152.742 186.507 186.571 -1.310 2.750 -4.169 O38 A1JDN 45 A1JDN O40 O5 O 0 1 N N N N N N 151.380 180.596 187.058 1.000 -0.816 -2.830 O40 A1JDN 46 A1JDN O42 O6 O 0 1 N N N N N N 149.652 181.487 188.581 1.582 -3.120 -1.705 O42 A1JDN 47 A1JDN O43 O7 O 0 1 N N N N N N 148.971 180.357 186.303 -0.682 -1.911 -1.132 O43 A1JDN 48 A1JDN O50 O8 O 0 1 N N N N N N 148.912 182.493 184.503 -3.280 -1.372 -0.166 O50 A1JDN 49 A1JDN O51 O9 O 0 1 N N N N N N 146.554 182.639 182.786 -5.188 -3.450 -0.311 O51 A1JDN 50 A1JDN O53 O10 O 0 1 N N N N N N 147.073 183.749 180.642 -6.326 -5.819 -0.265 O53 A1JDN 51 A1JDN O54 O11 O 0 1 N N N N N N 147.320 185.057 182.778 -7.621 -3.759 -1.260 O54 A1JDN 52 A1JDN O55 O12 O 0 1 N N N N N N 148.956 183.222 182.225 -5.617 -4.744 -2.435 O55 A1JDN 53 A1JDN O56 O13 O 0 1 N N N N N N 145.009 183.998 184.702 -4.305 -4.798 2.009 O56 A1JDN 54 A1JDN O57 O14 O 0 1 N N N N N N 145.835 183.886 187.409 -1.762 -4.116 3.030 O57 A1JDN 55 A1JDN O59 O15 O 0 1 N N N N N N 144.160 185.519 188.275 0.302 -5.733 3.229 O59 A1JDN 56 A1JDN O60 O16 O 0 1 N N N N N N 143.393 183.319 187.310 -1.125 -5.154 5.360 O60 A1JDN 57 A1JDN O61 O17 O 0 1 N N N N N N 144.592 183.373 189.530 -2.062 -6.578 3.498 O61 A1JDN 58 A1JDN O62 O18 O 0 1 N N N N N N 147.125 181.501 188.230 0.201 -3.260 1.188 O62 A1JDN 59 A1JDN O63 O19 O 0 1 N N N N N N 149.931 178.994 188.211 -0.269 -2.919 -3.409 O63 A1JDN 60 A1JDN P41 P1 P 0 1 N N N N N N 149.921 180.363 187.658 0.393 -2.207 -2.294 P41 A1JDN 61 A1JDN P52 P2 P 0 1 N N N N N N 147.539 183.729 182.082 -6.176 -4.449 -1.097 P52 A1JDN 62 A1JDN P58 P3 P 0 1 N N N N N N 144.410 184.028 188.179 -1.181 -5.421 3.773 P58 A1JDN 63 A1JDN H4A H1 H 0 1 N N N N N N 154.431 180.440 189.300 5.049 2.667 -1.800 H4A A1JDN 64 A1JDN H4B H2 H 0 1 N N N N N N 155.888 179.834 188.441 4.896 1.084 -1.001 H4B A1JDN 65 A1JDN H5B H3 H 0 1 N N N N N N 155.819 182.741 189.125 6.820 0.235 -2.316 H5B A1JDN 66 A1JDN H5A H4 H 0 1 N N N N N N 155.983 181.582 190.486 6.972 1.818 -3.115 H5A A1JDN 67 A1JDN H6A H5 H 0 1 N N N N N N 158.181 181.840 190.015 7.374 2.889 -0.915 H6A A1JDN 68 A1JDN H6B H6 H 0 1 N N N N N N 157.815 180.537 188.833 7.222 1.306 -0.116 H6B A1JDN 69 A1JDN H7A H7 H 0 1 N N N N N N 159.066 182.078 187.617 9.145 0.457 -1.431 H7A A1JDN 70 A1JDN H7B H8 H 0 1 N N N N N N 157.365 182.432 187.162 9.298 2.040 -2.230 H7B A1JDN 71 A1JDN H10B H9 H 0 0 N N N N N N 159.743 186.037 188.193 11.873 1.751 1.654 H10B A1JDN 72 A1JDN H10A H10 H 0 0 N N N N N N 159.612 186.155 189.980 12.026 3.335 0.855 H10A A1JDN 73 A1JDN H12A H11 H 0 0 N N N N N N 162.083 187.353 190.510 14.199 1.974 2.540 H12A A1JDN 74 A1JDN H12B H12 H 0 0 N N N N N N 161.367 185.946 191.366 14.352 3.557 1.740 H12B A1JDN 75 A1JDN H13A H13 H 0 0 N N N N N N 163.634 186.023 192.012 16.123 1.125 1.225 H13A A1JDN 76 A1JDN H13B H14 H 0 0 N N N N N N 163.498 184.686 190.820 16.275 2.708 0.426 H13B A1JDN 77 A1JDN H16A H15 H 0 0 N N N N N N 166.754 188.368 190.024 18.851 2.419 4.310 H16A A1JDN 78 A1JDN H16B H16 H 0 0 N N N N N N 165.873 188.002 188.502 19.003 4.002 3.511 H16B A1JDN 79 A1JDN H17A H17 H 0 0 N N N N N N 166.489 190.541 189.705 20.774 1.570 2.996 H17A A1JDN 80 A1JDN H17B H18 H 0 0 N N N N N N 165.746 190.175 188.111 20.927 3.154 2.197 H17B A1JDN 81 A1JDN H18A H19 H 0 0 N N N N N N 164.329 191.675 189.439 21.329 4.225 4.396 H18A A1JDN 82 A1JDN H18C H20 H 0 0 N N N N N N 163.523 190.093 189.166 21.177 2.642 5.195 H18C A1JDN 83 A1JDN H18B H21 H 0 0 N N N N N N 164.266 190.459 190.760 22.528 2.948 4.079 H18B A1JDN 84 A1JDN H14A H22 H 0 0 N N N N N N 165.527 185.951 190.440 16.677 3.780 2.626 H14A A1JDN 85 A1JDN H14B H23 H 0 0 N N N N N N 164.387 186.168 189.069 16.525 2.197 3.425 H14B A1JDN 86 A1JDN H20B H24 H 0 0 N N N N N N 151.690 184.154 186.149 0.501 1.238 -5.275 H20B A1JDN 87 A1JDN H20A H25 H 0 0 N N N N N N 152.513 183.981 187.736 1.277 2.612 -4.452 H20A A1JDN 88 A1JDN H27B H26 H 0 0 N N N N N N 156.593 188.681 183.260 -6.721 2.257 -0.171 H27B A1JDN 89 A1JDN H27A H27 H 0 0 N N N N N N 157.034 189.037 184.965 -5.945 3.631 0.652 H27A A1JDN 90 A1JDN H26A H28 H 0 0 N N N N N N 157.644 186.931 185.354 -5.933 3.122 -2.357 H26A A1JDN 91 A1JDN H26B H29 H 0 0 N N N N N N 158.607 186.843 183.840 -5.157 4.496 -1.534 H26B A1JDN 92 A1JDN H25B H30 H 0 0 N N N N N N 157.092 185.421 183.073 -3.728 2.924 -0.256 H25B A1JDN 93 A1JDN H25A H31 H 0 0 N N N N N N 155.956 186.809 182.975 -4.503 1.549 -1.079 H25A A1JDN 94 A1JDN H24A H32 H 0 0 N N N N N N 156.263 184.841 185.270 -3.716 2.414 -3.266 H24A A1JDN 95 A1JDN H24B H33 H 0 0 N N N N N N 154.907 184.942 184.096 -2.940 3.789 -2.443 H24B A1JDN 96 A1JDN H23B H34 H 0 0 N N N N N N 154.657 187.388 185.007 -2.286 0.842 -1.988 H23B A1JDN 97 A1JDN H23A H35 H 0 0 N N N N N N 155.602 186.766 186.402 -1.510 2.217 -1.165 H23A A1JDN 98 A1JDN H8B H36 H 0 1 N N N N N N 158.376 184.528 187.454 9.700 3.112 -0.030 H8B A1JDN 99 A1JDN H8A H37 H 0 1 N N N N N N 157.425 184.249 188.952 9.548 1.529 0.769 H8A A1JDN 100 A1JDN H1 H38 H 0 1 N N N N N N 153.545 182.297 185.491 2.901 0.799 -5.072 H1 A1JDN 101 A1JDN H11B H39 H 0 0 N N N N N N 161.999 184.698 189.115 13.797 0.902 0.340 H11B A1JDN 102 A1JDN H11A H40 H 0 0 N N N N N N 161.923 186.364 188.448 13.950 2.486 -0.459 H11A A1JDN 103 A1JDN H15B H41 H 0 0 N N N N N N 163.737 188.358 189.940 18.601 2.931 1.311 H15B A1JDN 104 A1JDN H15A H42 H 0 0 N N N N N N 164.846 188.141 191.336 18.448 1.348 2.110 H15A A1JDN 105 A1JDN H28A H43 H 0 0 N N N N N N 159.456 189.061 184.183 -7.375 5.203 -0.625 H28A A1JDN 106 A1JDN H28B H44 H 0 0 N N N N N N 158.808 189.057 182.507 -8.151 3.829 -1.449 H28B A1JDN 107 A1JDN H29B H45 H 0 0 N N N N N N 157.412 191.101 183.321 -8.938 2.964 0.738 H29B A1JDN 108 A1JDN H29A H46 H 0 0 N N N N N N 158.626 191.178 184.641 -8.162 4.339 1.561 H29A A1JDN 109 A1JDN H30A H47 H 0 0 N N N N N N 160.031 192.253 183.317 -9.592 5.911 0.283 H30A A1JDN 110 A1JDN H30B H48 H 0 0 N N N N N N 160.008 190.885 182.152 -10.368 4.536 -0.540 H30B A1JDN 111 A1JDN H31A H49 H 0 0 N N N N N N 159.144 192.327 180.697 -11.155 3.671 1.646 H31A A1JDN 112 A1JDN H31B H50 H 0 0 N N N N N N 157.621 192.187 181.639 -10.380 5.046 2.470 H31B A1JDN 113 A1JDN H32B H51 H 0 0 N N N N N N 157.744 194.295 182.338 -11.809 6.618 1.192 H32B A1JDN 114 A1JDN H32A H52 H 0 0 N N N N N N 159.468 194.120 182.812 -12.585 5.244 0.369 H32A A1JDN 115 A1JDN H33A H53 H 0 0 N N N N N N 159.282 195.872 181.184 -13.373 4.379 2.555 H33A A1JDN 116 A1JDN H33B H54 H 0 0 N N N N N N 160.109 194.465 180.434 -12.597 5.753 3.378 H33B A1JDN 117 A1JDN H34B H55 H 0 0 N N N N N N 157.873 193.815 179.453 -14.027 7.325 2.100 H34B A1JDN 118 A1JDN H34A H56 H 0 0 N N N N N N 157.251 195.401 180.023 -14.802 5.951 1.277 H34A A1JDN 119 A1JDN H35A H57 H 0 0 N N N N N N 159.163 196.450 178.694 -15.590 5.086 3.464 H35A A1JDN 120 A1JDN H35B H58 H 0 0 N N N N N N 159.381 194.833 177.944 -14.814 6.460 4.287 H35B A1JDN 121 A1JDN H36B H59 H 0 0 N N N N N N 157.118 194.895 177.064 -16.244 8.033 3.009 H36B A1JDN 122 A1JDN H36A H60 H 0 0 N N N N N N 156.810 196.458 177.894 -17.020 6.658 2.186 H36A A1JDN 123 A1JDN H37C H61 H 0 0 N N N N N N 157.266 196.785 175.502 -17.807 5.793 4.372 H37C A1JDN 124 A1JDN H37A H62 H 0 0 N N N N N N 158.547 197.532 176.515 -17.032 7.168 5.195 H37A A1JDN 125 A1JDN H37B H63 H 0 0 N N N N N N 158.855 195.968 175.686 -18.398 7.449 4.090 H37B A1JDN 126 A1JDN H39A H64 H 0 0 N N N N N N 150.754 182.314 186.062 1.426 -1.140 -4.826 H39A A1JDN 127 A1JDN H39B H65 H 0 0 N N N N N N 151.687 181.140 185.072 2.803 -1.311 -3.711 H39B A1JDN 128 A1JDN H44 H66 H 0 1 N N N N N N 146.918 180.225 185.942 -1.225 -3.898 -0.971 H44 A1JDN 129 A1JDN H45 H67 H 0 1 N N N N N N 148.161 182.804 186.990 -1.432 -2.016 1.423 H45 A1JDN 130 A1JDN H46 H68 H 0 1 N N N N N N 145.229 182.084 186.523 -1.784 -5.038 1.181 H46 A1JDN 131 A1JDN H47 H69 H 0 1 N N N N N N 147.055 184.067 185.078 -3.762 -2.811 1.847 H47 A1JDN 132 A1JDN H48 H70 H 0 1 N N N N N N 145.737 181.443 184.280 -3.555 -4.694 -0.547 H48 A1JDN 133 A1JDN H49 H71 H 0 1 N N N N N N 148.056 180.716 183.840 -3.162 -2.603 -1.821 H49 A1JDN 134 A1JDN H9A H72 H 0 1 N N N N N N 159.313 183.921 190.252 11.624 2.263 -1.344 H9A A1JDN 135 A1JDN H9B H73 H 0 1 N N N N N N 160.340 183.496 188.841 11.471 0.680 -0.545 H9B A1JDN 136 A1JDN H2 H74 H 0 1 N N N N N N 149.514 181.151 189.459 2.061 -2.715 -0.969 H2 A1JDN 137 A1JDN H50 H75 H 0 1 N N N N N N 149.000 182.838 183.622 -4.207 -1.116 -0.271 H50 A1JDN 138 A1JDN H3 H76 H 0 1 N N N N N N 147.770 183.433 180.079 -6.688 -5.701 0.624 H3 A1JDN 139 A1JDN H4 H77 H 0 1 N N N N N N 148.130 185.338 183.188 -8.268 -4.306 -1.725 H4 A1JDN 140 A1JDN H56 H78 H 0 1 N N N N N N 145.107 184.348 183.824 -5.259 -4.672 1.905 H56 A1JDN 141 A1JDN H5 H79 H 0 1 N N N N N N 144.162 185.783 189.188 0.934 -5.016 3.375 H5 A1JDN 142 A1JDN H6 H80 H 0 1 N N N N N N 143.042 182.571 187.779 -0.784 -5.900 5.872 H6 A1JDN 143 A1JDN H62 H81 H 0 1 N N N N N N 146.892 182.186 188.846 0.456 -3.303 2.119 H62 A1JDN 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JDN C1 O2 SING N N 1 A1JDN O2 C3 SING N N 2 A1JDN C3 C4 SING N N 3 A1JDN C4 C5 SING N N 4 A1JDN C5 C6 SING N N 5 A1JDN C6 C7 SING N N 6 A1JDN C7 C8 SING N N 7 A1JDN C8 C9 SING N N 8 A1JDN C9 C10 SING N N 9 A1JDN C10 C11 SING N N 10 A1JDN C11 C12 SING N N 11 A1JDN C12 C13 SING N N 12 A1JDN C13 C14 SING N N 13 A1JDN C14 C15 SING N N 14 A1JDN C15 C16 SING N N 15 A1JDN C16 C17 SING N N 16 A1JDN C17 C18 SING N N 17 A1JDN C3 O19 DOUB N N 18 A1JDN C1 C20 SING N N 19 A1JDN C20 O21 SING N N 20 A1JDN O21 C22 SING N N 21 A1JDN C22 C23 SING N N 22 A1JDN C23 C24 SING N N 23 A1JDN C24 C25 SING N N 24 A1JDN C25 C26 SING N N 25 A1JDN C26 C27 SING N N 26 A1JDN C27 C28 SING N N 27 A1JDN C28 C29 SING N N 28 A1JDN C29 C30 SING N N 29 A1JDN C30 C31 SING N N 30 A1JDN C31 C32 SING N N 31 A1JDN C32 C33 SING N N 32 A1JDN C33 C34 SING N N 33 A1JDN C34 C35 SING N N 34 A1JDN C35 C36 SING N N 35 A1JDN C36 C37 SING N N 36 A1JDN C22 O38 DOUB N N 37 A1JDN C1 C39 SING N N 38 A1JDN C39 O40 SING N N 39 A1JDN O40 P41 SING N N 40 A1JDN P41 O42 SING N N 41 A1JDN P41 O43 SING N N 42 A1JDN O43 C44 SING N N 43 A1JDN C44 C45 SING N N 44 A1JDN C45 C46 SING N N 45 A1JDN C46 C47 SING N N 46 A1JDN C47 C48 SING N N 47 A1JDN C48 C49 SING N N 48 A1JDN C49 O50 SING N N 49 A1JDN C48 O51 SING N N 50 A1JDN O51 P52 SING N N 51 A1JDN P52 O53 SING N N 52 A1JDN P52 O54 SING N N 53 A1JDN P52 O55 DOUB N N 54 A1JDN C47 O56 SING N N 55 A1JDN C46 O57 SING N N 56 A1JDN O57 P58 SING N N 57 A1JDN P58 O59 SING N N 58 A1JDN P58 O60 SING N N 59 A1JDN P58 O61 DOUB N N 60 A1JDN C45 O62 SING N N 61 A1JDN P41 O63 DOUB N N 62 A1JDN C49 C44 SING N N 63 A1JDN C4 H4A SING N N 64 A1JDN C4 H4B SING N N 65 A1JDN C5 H5B SING N N 66 A1JDN C5 H5A SING N N 67 A1JDN C6 H6A SING N N 68 A1JDN C6 H6B SING N N 69 A1JDN C7 H7A SING N N 70 A1JDN C7 H7B SING N N 71 A1JDN C10 H10B SING N N 72 A1JDN C10 H10A SING N N 73 A1JDN C12 H12A SING N N 74 A1JDN C12 H12B SING N N 75 A1JDN C13 H13A SING N N 76 A1JDN C13 H13B SING N N 77 A1JDN C16 H16A SING N N 78 A1JDN C16 H16B SING N N 79 A1JDN C17 H17A SING N N 80 A1JDN C17 H17B SING N N 81 A1JDN C18 H18A SING N N 82 A1JDN C18 H18C SING N N 83 A1JDN C18 H18B SING N N 84 A1JDN C14 H14A SING N N 85 A1JDN C14 H14B SING N N 86 A1JDN C20 H20B SING N N 87 A1JDN C20 H20A SING N N 88 A1JDN C27 H27B SING N N 89 A1JDN C27 H27A SING N N 90 A1JDN C26 H26A SING N N 91 A1JDN C26 H26B SING N N 92 A1JDN C25 H25B SING N N 93 A1JDN C25 H25A SING N N 94 A1JDN C24 H24A SING N N 95 A1JDN C24 H24B SING N N 96 A1JDN C23 H23B SING N N 97 A1JDN C23 H23A SING N N 98 A1JDN C8 H8B SING N N 99 A1JDN C8 H8A SING N N 100 A1JDN C1 H1 SING N N 101 A1JDN C11 H11B SING N N 102 A1JDN C11 H11A SING N N 103 A1JDN C15 H15B SING N N 104 A1JDN C15 H15A SING N N 105 A1JDN C28 H28A SING N N 106 A1JDN C28 H28B SING N N 107 A1JDN C29 H29B SING N N 108 A1JDN C29 H29A SING N N 109 A1JDN C30 H30A SING N N 110 A1JDN C30 H30B SING N N 111 A1JDN C31 H31A SING N N 112 A1JDN C31 H31B SING N N 113 A1JDN C32 H32B SING N N 114 A1JDN C32 H32A SING N N 115 A1JDN C33 H33A SING N N 116 A1JDN C33 H33B SING N N 117 A1JDN C34 H34B SING N N 118 A1JDN C34 H34A SING N N 119 A1JDN C35 H35A SING N N 120 A1JDN C35 H35B SING N N 121 A1JDN C36 H36B SING N N 122 A1JDN C36 H36A SING N N 123 A1JDN C37 H37C SING N N 124 A1JDN C37 H37A SING N N 125 A1JDN C37 H37B SING N N 126 A1JDN C39 H39A SING N N 127 A1JDN C39 H39B SING N N 128 A1JDN C44 H44 SING N N 129 A1JDN C45 H45 SING N N 130 A1JDN C46 H46 SING N N 131 A1JDN C47 H47 SING N N 132 A1JDN C48 H48 SING N N 133 A1JDN C49 H49 SING N N 134 A1JDN C9 H9A SING N N 135 A1JDN C9 H9B SING N N 136 A1JDN O42 H2 SING N N 137 A1JDN O50 H50 SING N N 138 A1JDN O53 H3 SING N N 139 A1JDN O54 H4 SING N N 140 A1JDN O56 H56 SING N N 141 A1JDN O59 H5 SING N N 142 A1JDN O60 H6 SING N N 143 A1JDN O62 H62 SING N N 144 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JDN InChI InChI 1.06 "InChI=1S/C41H81O19P3/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-34(42)55-31-33(57-35(43)30-28-26-24-22-20-18-16-14-12-10-8-6-4-2)32-56-63(53,54)60-41-37(45)39(58-61(47,48)49)36(44)40(38(41)46)59-62(50,51)52/h33,36-41,44-46H,3-32H2,1-2H3,(H,53,54)(H2,47,48,49)(H2,50,51,52)" A1JDN InChIKey InChI 1.06 UZMPYXSDDZXMAI-UHFFFAOYSA-N A1JDN SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCCCCC(=O)OC[C@H](CO[P](O)(=O)O[C@@H]1[C@H](O)[C@H](O[P](O)(O)=O)[C@H](O)[C@H](O[P](O)(O)=O)[C@@H]1O)OC(=O)CCCCCCCCCCCCCCC" A1JDN SMILES CACTVS 3.385 "CCCCCCCCCCCCCCCC(=O)OC[CH](CO[P](O)(=O)O[CH]1[CH](O)[CH](O[P](O)(O)=O)[CH](O)[CH](O[P](O)(O)=O)[CH]1O)OC(=O)CCCCCCCCCCCCCCC" A1JDN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC1[C@@H]([C@H](C([C@H]([C@H]1O)OP(=O)(O)O)O)OP(=O)(O)O)O)OC(=O)CCCCCCCCCCCCCCC" A1JDN SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCCCC(=O)OCC(COP(=O)(O)OC1C(C(C(C(C1O)OP(=O)(O)O)O)OP(=O)(O)O)O)OC(=O)CCCCCCCCCCCCCCC" # _pdbx_chem_comp_identifier.comp_id A1JDN _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R})-2-hexadecanoyloxy-3-[oxidanyl-[(2~{R},3~{S},5~{R},6~{R})-2,4,6-tris(oxidanyl)-3,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] hexadecanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JDN "Create component" 2025-05-19 PDBE A1JDN "Initial release" 2026-09-16 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1JDN _pdbx_chem_comp_synonyms.name "[(2~{R})-2-hexadecanoyloxy-3-[oxidanyl-[(2~{R},3~{S},5~{R},6~{R})-2,4,6-tris(oxidanyl)-3,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] hexadecanoate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #