data_A1JE2 # _chem_comp.id A1JE2 _chem_comp.name "1-[4-[(1~{S},2~{S},3~{S},4~{R},5~{R})-2-azanyl-3-oxidanyl-6,8-dioxabicyclo[3.2.1]octan-4-yl]piperazin-1-yl]ethanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H21 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-06-03 _chem_comp.pdbx_modified_date 2025-12-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 271.313 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JE2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RE1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JE2 C10 C1 C 0 1 N N S N N N -8.083 1.730 -18.704 -2.981 -0.265 1.179 C10 A1JE2 1 A1JE2 C11 C2 C 0 1 N N S N N N -8.305 2.735 -19.854 -2.313 1.103 0.960 C11 A1JE2 2 A1JE2 C01 C3 C 0 1 N N N N N N -16.468 4.901 -20.641 5.076 1.110 -0.356 C01 A1JE2 3 A1JE2 C02 C4 C 0 1 N N N N N N -15.963 3.514 -20.294 4.289 -0.137 -0.046 C02 A1JE2 4 A1JE2 C03 C5 C 0 1 N N N N N N -14.006 4.619 -19.203 2.186 -1.255 0.539 C03 A1JE2 5 A1JE2 C04 C6 C 0 1 N N N N N N -12.479 4.498 -19.359 0.939 -1.260 -0.353 C04 A1JE2 6 A1JE2 C05 C7 C 0 1 N N N N N N -12.679 2.049 -19.495 1.036 1.146 -0.638 C05 A1JE2 7 A1JE2 C06 C8 C 0 1 N N N N N N -14.208 2.101 -19.277 2.286 1.250 0.241 C06 A1JE2 8 A1JE2 C07 C9 C 0 1 N N R N N N -10.544 3.081 -18.709 -1.069 -0.022 -0.894 C07 A1JE2 9 A1JE2 C08 C10 C 0 1 N N R N N N -10.073 1.988 -17.723 -1.846 -1.284 -0.489 C08 A1JE2 10 A1JE2 C09 C11 C 0 1 N N N N N N -7.849 2.440 -17.385 -3.965 -0.500 0.009 C09 A1JE2 11 A1JE2 C12 C12 C 0 1 N N S N N N -9.835 2.852 -20.081 -1.895 1.211 -0.511 C12 A1JE2 12 A1JE2 N01 N1 N 0 1 N N N N N N -14.753 3.427 -19.633 2.973 -0.050 0.234 N01 A1JE2 13 A1JE2 N02 N2 N 0 1 N N N N N N -12.022 3.201 -18.824 0.220 0.010 -0.191 N02 A1JE2 14 A1JE2 N03 N3 N 0 1 N N N N N N -7.619 2.335 -21.121 -1.127 1.215 1.820 N03 A1JE2 15 A1JE2 O01 O1 O 0 1 N N N N N N -16.584 2.486 -20.609 4.839 -1.217 -0.047 O01 A1JE2 16 A1JE2 O02 O2 O 0 1 N N N N N N -9.145 2.578 -16.799 -3.187 -1.171 -1.000 O02 A1JE2 17 A1JE2 O03 O3 O 0 1 N N N N N N -9.334 1.024 -18.462 -1.969 -1.277 0.950 O03 A1JE2 18 A1JE2 O04 O4 O 0 1 N N N N N N -10.086 3.894 -21.044 -3.060 1.280 -1.334 O04 A1JE2 19 A1JE2 H16 H1 H 0 1 N N N N N N -7.257 1.042 -18.939 -3.448 -0.350 2.160 H16 A1JE2 20 A1JE2 H17 H2 H 0 1 N N N N N N -7.926 3.717 -19.535 -3.018 1.898 1.203 H17 A1JE2 21 A1JE2 H03 H3 H 0 1 N N N N N N -17.420 4.819 -21.185 6.115 0.844 -0.554 H03 A1JE2 22 A1JE2 H02 H4 H 0 1 N N N N N N -16.622 5.477 -19.717 4.653 1.599 -1.233 H02 A1JE2 23 A1JE2 H01 H5 H 0 1 N N N N N N -15.727 5.413 -21.273 5.032 1.789 0.496 H01 A1JE2 24 A1JE2 H04 H6 H 0 1 N N N N N N -14.347 5.475 -19.804 1.886 -1.240 1.587 H04 A1JE2 25 A1JE2 H05 H7 H 0 1 N N N N N N -14.231 4.803 -18.142 2.782 -2.145 0.340 H05 A1JE2 26 A1JE2 H06 H8 H 0 1 N N N N N N -12.214 4.567 -20.424 1.237 -1.379 -1.394 H06 A1JE2 27 A1JE2 H07 H9 H 0 1 N N N N N N -11.990 5.314 -18.806 0.289 -2.086 -0.064 H07 A1JE2 28 A1JE2 H08 H10 H 0 1 N N N N N N -12.465 2.087 -20.573 0.456 2.065 -0.557 H08 A1JE2 29 A1JE2 H09 H11 H 0 1 N N N N N N -12.284 1.112 -19.076 1.333 0.994 -1.676 H09 A1JE2 30 A1JE2 H11 H12 H 0 1 N N N N N N -14.427 1.895 -18.219 2.951 2.017 -0.156 H11 A1JE2 31 A1JE2 H10 H13 H 0 1 N N N N N N -14.686 1.336 -19.906 1.997 1.509 1.260 H10 A1JE2 32 A1JE2 H12 H14 H 0 1 N N N N N N -10.168 4.039 -18.320 -0.900 -0.027 -1.971 H12 A1JE2 33 A1JE2 H13 H15 H 0 1 N N N N N N -10.937 1.542 -17.208 -1.356 -2.187 -0.855 H13 A1JE2 34 A1JE2 H14 H16 H 0 1 N N N N N N -7.395 3.428 -17.554 -4.793 -1.132 0.331 H14 A1JE2 35 A1JE2 H15 H17 H 0 1 N N N N N N -7.194 1.841 -16.735 -4.339 0.451 -0.369 H15 A1JE2 36 A1JE2 H20 H18 H 0 1 N N N N N N -10.190 1.892 -20.485 -1.294 2.110 -0.653 H20 A1JE2 37 A1JE2 H19 H20 H 0 1 N N N N N N -7.797 3.020 -21.828 -1.377 1.131 2.794 H19 A1JE2 38 A1JE2 H18 H21 H 0 1 N N N N N N -6.634 2.270 -20.960 -0.430 0.532 1.565 H18 A1JE2 39 A1JE2 H21 H23 H 0 1 N N N N N N -9.629 3.695 -21.853 -3.632 2.037 -1.144 H21 A1JE2 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JE2 C01 C02 SING N N 1 A1JE2 C02 O01 DOUB N N 2 A1JE2 C02 N01 SING N N 3 A1JE2 N01 C03 SING N N 4 A1JE2 N01 C06 SING N N 5 A1JE2 C03 C04 SING N N 6 A1JE2 C04 N02 SING N N 7 A1JE2 N02 C05 SING N N 8 A1JE2 N02 C07 SING N N 9 A1JE2 C05 C06 SING N N 10 A1JE2 C07 C08 SING N N 11 A1JE2 C07 C12 SING N N 12 A1JE2 C08 O02 SING N N 13 A1JE2 C08 O03 SING N N 14 A1JE2 O02 C09 SING N N 15 A1JE2 C09 C10 SING N N 16 A1JE2 C10 O03 SING N N 17 A1JE2 C10 C11 SING N N 18 A1JE2 C11 N03 SING N N 19 A1JE2 C11 C12 SING N N 20 A1JE2 C12 O04 SING N N 21 A1JE2 C10 H16 SING N N 22 A1JE2 C11 H17 SING N N 23 A1JE2 C01 H03 SING N N 24 A1JE2 C01 H02 SING N N 25 A1JE2 C01 H01 SING N N 26 A1JE2 C03 H04 SING N N 27 A1JE2 C03 H05 SING N N 28 A1JE2 C04 H06 SING N N 29 A1JE2 C04 H07 SING N N 30 A1JE2 C05 H08 SING N N 31 A1JE2 C05 H09 SING N N 32 A1JE2 C06 H11 SING N N 33 A1JE2 C06 H10 SING N N 34 A1JE2 C07 H12 SING N N 35 A1JE2 C08 H13 SING N N 36 A1JE2 C09 H14 SING N N 37 A1JE2 C09 H15 SING N N 38 A1JE2 C12 H20 SING N N 39 A1JE2 N03 H19 SING N N 40 A1JE2 N03 H18 SING N N 41 A1JE2 O04 H21 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JE2 InChI InChI 1.06 "InChI=1S/C12H21N3O4/c1-7(16)14-2-4-15(5-3-14)10-11(17)9(13)8-6-18-12(10)19-8/h8-12,17H,2-6,13H2,1H3/t8-,9-,10-,11?,12-/m1/s1" A1JE2 InChIKey InChI 1.06 SMKPDPYRSRUSLD-JIPOKYKOSA-N A1JE2 SMILES_CANONICAL CACTVS 3.385 "CC(=O)N1CCN(CC1)[C@@H]2[C@@H](O)[C@H](N)[C@H]3CO[C@@H]2O3" A1JE2 SMILES CACTVS 3.385 "CC(=O)N1CCN(CC1)[CH]2[CH](O)[CH](N)[CH]3CO[CH]2O3" A1JE2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCN(CC1)[C@@H]2[C@H]([C@@H]([C@H]3CO[C@@H]2O3)N)O" A1JE2 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCN(CC1)C2C(C(C3COC2O3)N)O" # _pdbx_chem_comp_identifier.comp_id A1JE2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[4-[(1~{S},2~{S},3~{S},4~{R},5~{R})-2-azanyl-3-oxidanyl-6,8-dioxabicyclo[3.2.1]octan-4-yl]piperazin-1-yl]ethanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JE2 "Create component" 2025-06-03 PDBE A1JE2 "Initial release" 2025-12-31 RCSB #