data_A1JEE # _chem_comp.id A1JEE _chem_comp.name "(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-[3-[(2~{S})-1-methylpyrrolidin-2-yl]pyridin-1-yl]oxane-3,4,5-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H25 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2025-06-03 _chem_comp.pdbx_modified_date 2026-04-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 325.380 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JEE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RDR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JEE C1 C1 C 0 1 N N N N N N 39.997 1.642 -3.398 -5.052 -1.595 -1.576 C1 A1JEE 1 A1JEE O1 O1 O 0 1 N N N N N N 41.552 -4.340 -4.430 2.120 -1.027 0.112 O1 A1JEE 2 A1JEE O2 O2 O 0 1 N N N N N N 42.985 -4.641 -2.080 3.726 -3.315 -0.554 O2 A1JEE 3 A1JEE C2 C2 C 0 1 N N N N N N 42.322 1.642 -2.529 -5.870 -0.170 0.215 C2 A1JEE 4 A1JEE C3 C3 C 0 1 N N N N N N 43.610 0.896 -2.850 -5.766 1.290 -0.292 C3 A1JEE 5 A1JEE C4 C4 C 0 1 N N N N N N 43.421 0.388 -4.280 -4.234 1.530 -0.243 C4 A1JEE 6 A1JEE C5 C5 C 0 1 N N S N N N 41.937 0.667 -4.624 -3.654 0.156 -0.640 C5 A1JEE 7 A1JEE O3 O3 O 0 1 N N N N N N 43.620 -7.461 -4.548 5.372 0.516 -0.570 O3 A1JEE 8 A1JEE O4 O4 O 0 1 N N N N N N 44.393 -6.203 -6.813 3.770 2.773 0.152 O4 A1JEE 9 A1JEE O5 O5 O 0 1 N N N N N N 42.018 -4.666 -8.090 0.951 2.433 -0.193 O5 A1JEE 10 A1JEE N1 N1 N 0 1 N N N N N N 41.292 0.944 -3.308 -4.693 -0.856 -0.358 N1 A1JEE 11 A1JEE C6 C6 C 0 1 Y N N N N N 41.268 -0.442 -5.430 -2.421 -0.135 0.176 C6 A1JEE 12 A1JEE C7 C7 C 0 1 Y N N N N N 40.357 -0.111 -6.433 -2.533 -0.612 1.472 C7 A1JEE 13 A1JEE C8 C8 C 0 1 Y N N N N N 39.755 -1.102 -7.193 -1.370 -0.871 2.183 C8 A1JEE 14 A1JEE C9 C9 C 0 1 Y N N N N N 40.060 -2.398 -6.973 -0.148 -0.647 1.579 C9 A1JEE 15 A1JEE N2 N2 N 1 1 Y N N N N N 40.953 -2.760 -5.994 -0.079 -0.192 0.343 N2 A1JEE 16 A1JEE C10 C10 C 0 1 N N R N N N 41.279 -4.190 -5.814 1.236 0.032 -0.262 C10 A1JEE 17 A1JEE C11 C11 C 0 1 N N R N N N 41.936 -5.677 -4.059 3.430 -0.919 -0.449 C11 A1JEE 18 A1JEE C12 C12 C 0 1 N N N N N N 42.062 -5.643 -2.547 4.275 -2.115 -0.006 C12 A1JEE 19 A1JEE C13 C13 C 0 1 N N S N N N 43.226 -6.101 -4.775 4.085 0.377 0.035 C13 A1JEE 20 A1JEE C14 C14 C 0 1 N N S N N N 43.077 -5.974 -6.285 3.203 1.565 -0.360 C14 A1JEE 21 A1JEE C15 C15 C 0 1 N N R N N N 42.458 -4.609 -6.709 1.803 1.366 0.230 C15 A1JEE 22 A1JEE C16 C16 C 0 1 Y N N N N N 41.566 -1.785 -5.222 -1.163 0.065 -0.362 C16 A1JEE 23 A1JEE H1 H1 H 0 1 N N N N N N 39.596 1.804 -2.387 -4.169 -2.100 -1.968 H1 A1JEE 24 A1JEE H2 H2 H 0 1 N N N N N N 40.138 2.612 -3.896 -5.818 -2.334 -1.340 H2 A1JEE 25 A1JEE H3 H3 H 0 1 N N N N N N 39.291 1.031 -3.979 -5.435 -0.900 -2.323 H3 A1JEE 26 A1JEE H4 H4 H 0 1 N N N N N N 43.025 -4.664 -1.131 4.213 -4.115 -0.314 H4 A1JEE 27 A1JEE H5 H5 H 0 1 N N N N N N 42.395 2.696 -2.837 -5.833 -0.198 1.304 H5 A1JEE 28 A1JEE H6 H6 H 0 1 N N N N N N 42.099 1.589 -1.453 -6.790 -0.632 -0.145 H6 A1JEE 29 A1JEE H7 H7 H 0 1 N N N N N N 43.754 0.055 -2.156 -6.143 1.378 -1.311 H7 A1JEE 30 A1JEE H8 H8 H 0 1 N N N N N N 44.475 1.573 -2.790 -6.290 1.973 0.376 H8 A1JEE 31 A1JEE H9 H9 H 0 1 N N N N N N 43.633 -0.690 -4.336 -3.941 2.294 -0.962 H9 A1JEE 32 A1JEE H10 H10 H 0 1 N N N N N N 44.084 0.929 -4.971 -3.919 1.808 0.763 H10 A1JEE 33 A1JEE H11 H11 H 0 1 N N N N N N 41.903 1.588 -5.225 -3.409 0.149 -1.702 H11 A1JEE 34 A1JEE H12 H12 H 0 1 N N N N N N 43.731 -7.608 -3.616 5.846 1.317 -0.307 H12 A1JEE 35 A1JEE H13 H13 H 0 1 N N N N N N 44.710 -7.048 -6.518 4.661 2.959 -0.175 H13 A1JEE 36 A1JEE H14 H14 H 0 1 N N N N N N 41.643 -3.829 -8.338 1.253 3.310 0.080 H14 A1JEE 37 A1JEE H16 H16 H 0 1 N N N N N N 40.119 0.926 -6.619 -3.502 -0.777 1.919 H16 A1JEE 38 A1JEE H17 H17 H 0 1 N N N N N N 39.043 -0.837 -7.960 -1.420 -1.243 3.196 H17 A1JEE 39 A1JEE H18 H18 H 0 1 N N N N N N 39.594 -3.163 -7.577 0.762 -0.846 2.126 H18 A1JEE 40 A1JEE H19 H19 H 0 1 N N N N N N 40.403 -4.796 -6.091 1.137 0.057 -1.347 H19 A1JEE 41 A1JEE H20 H20 H 0 1 N N N N N N 41.137 -6.383 -4.331 3.360 -0.906 -1.537 H20 A1JEE 42 A1JEE H21 H21 H 0 1 N N N N N N 41.071 -5.434 -2.118 4.272 -2.178 1.082 H21 A1JEE 43 A1JEE H22 H22 H 0 1 N N N N N N 42.410 -6.628 -2.202 5.298 -1.988 -0.359 H22 A1JEE 44 A1JEE H23 H23 H 0 1 N N N N N N 44.033 -5.428 -4.451 4.194 0.348 1.120 H23 A1JEE 45 A1JEE H24 H24 H 0 1 N N N N N N 42.402 -6.771 -6.632 3.137 1.625 -1.446 H24 A1JEE 46 A1JEE H25 H25 H 0 1 N N N N N N 43.242 -3.844 -6.614 1.864 1.358 1.318 H25 A1JEE 47 A1JEE H26 H26 H 0 1 N N N N N N 42.275 -2.068 -4.459 -1.067 0.433 -1.373 H26 A1JEE 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JEE O5 C15 SING N N 1 A1JEE C8 C9 DOUB Y N 2 A1JEE C8 C7 SING Y N 3 A1JEE C9 N2 SING Y N 4 A1JEE O4 C14 SING N N 5 A1JEE C15 C14 SING N N 6 A1JEE C15 C10 SING N N 7 A1JEE C7 C6 DOUB Y N 8 A1JEE C14 C13 SING N N 9 A1JEE N2 C10 SING N N 10 A1JEE N2 C16 DOUB Y N 11 A1JEE C10 O1 SING N N 12 A1JEE C6 C16 SING Y N 13 A1JEE C6 C5 SING N N 14 A1JEE C13 O3 SING N N 15 A1JEE C13 C11 SING N N 16 A1JEE C5 C4 SING N N 17 A1JEE C5 N1 SING N N 18 A1JEE O1 C11 SING N N 19 A1JEE C4 C3 SING N N 20 A1JEE C11 C12 SING N N 21 A1JEE C1 N1 SING N N 22 A1JEE N1 C2 SING N N 23 A1JEE C3 C2 SING N N 24 A1JEE C12 O2 SING N N 25 A1JEE C1 H1 SING N N 26 A1JEE C1 H2 SING N N 27 A1JEE C1 H3 SING N N 28 A1JEE O2 H4 SING N N 29 A1JEE C2 H5 SING N N 30 A1JEE C2 H6 SING N N 31 A1JEE C3 H7 SING N N 32 A1JEE C3 H8 SING N N 33 A1JEE C4 H9 SING N N 34 A1JEE C4 H10 SING N N 35 A1JEE C5 H11 SING N N 36 A1JEE O3 H12 SING N N 37 A1JEE O4 H13 SING N N 38 A1JEE O5 H14 SING N N 39 A1JEE C7 H16 SING N N 40 A1JEE C8 H17 SING N N 41 A1JEE C9 H18 SING N N 42 A1JEE C10 H19 SING N N 43 A1JEE C11 H20 SING N N 44 A1JEE C12 H21 SING N N 45 A1JEE C12 H22 SING N N 46 A1JEE C13 H23 SING N N 47 A1JEE C14 H24 SING N N 48 A1JEE C15 H25 SING N N 49 A1JEE C16 H26 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JEE InChI InChI 1.06 "InChI=1S/C16H25N2O5/c1-17-6-3-5-11(17)10-4-2-7-18(8-10)16-15(22)14(21)13(20)12(9-19)23-16/h2,4,7-8,11-16,19-22H,3,5-6,9H2,1H3/q+1/t11-,12+,13+,14-,15+,16+/m0/s1" A1JEE InChIKey InChI 1.06 VGLQACXVSVKVQW-RCZWDNKTSA-N A1JEE SMILES_CANONICAL CACTVS 3.385 "CN1CCC[C@H]1c2ccc[n+](c2)[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O" A1JEE SMILES CACTVS 3.385 "CN1CCC[CH]1c2ccc[n+](c2)[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O" A1JEE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCC[C@H]1c2ccc[n+](c2)[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O" A1JEE SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCCC1c2ccc[n+](c2)C3C(C(C(C(O3)CO)O)O)O" # _pdbx_chem_comp_identifier.comp_id A1JEE _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-[3-[(2~{S})-1-methylpyrrolidin-2-yl]pyridin-1-ium-1-yl]oxane-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JEE "Create component" 2025-06-03 PDBE A1JEE "Initial release" 2026-04-22 RCSB #