data_A1JEM # _chem_comp.id A1JEM _chem_comp.name "1-ethyl-3-[[(4~{S})-8-fluoranyl-3,4-dihydro-1~{H}-[1,4]oxazino[4,3-a]benzimidazol-4-yl]methyl]urea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H17 F N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-06-03 _chem_comp.pdbx_modified_date 2025-12-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 292.309 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JEM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9REJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JEM C01 C1 C 0 1 N N N N N N -6.722 -4.490 -46.715 7.119 -0.981 0.268 C01 A1JEM 1 A1JEM C02 C2 C 0 1 N N N N N N -5.926 -3.559 -45.853 5.752 -1.382 -0.290 C02 A1JEM 2 A1JEM C03 C3 C 0 1 N N N N N N -5.116 -1.273 -45.925 3.445 -0.606 -0.170 C03 A1JEM 3 A1JEM C04 C4 C 0 1 N N N N N N -4.418 1.092 -46.180 1.108 0.082 -0.120 C04 A1JEM 4 A1JEM C05 C5 C 0 1 N N S N N N -5.069 2.482 -46.480 0.259 1.182 0.519 C05 A1JEM 5 A1JEM C06 C6 C 0 1 N N N N N N -5.331 2.809 -47.978 0.672 2.548 -0.044 C06 A1JEM 6 A1JEM C07 C7 C 0 1 N N N N N N -7.686 2.221 -48.109 -1.554 3.407 -0.322 C07 A1JEM 7 A1JEM C08 C8 C 0 1 Y N N N N N -7.640 2.225 -46.620 -2.003 1.970 -0.190 C08 A1JEM 8 A1JEM C09 C9 C 0 1 Y N N N N N -8.145 2.184 -44.452 -3.191 0.164 -0.182 C09 A1JEM 9 A1JEM C10 C10 C 0 1 Y N N N N N -6.787 2.342 -44.472 -1.878 -0.192 0.216 C10 A1JEM 10 A1JEM C11 C11 C 0 1 Y N N N N N -6.024 2.464 -43.384 -1.553 -1.508 0.528 C11 A1JEM 11 A1JEM C12 C12 C 0 1 Y N N N N N -6.658 2.412 -42.197 -2.565 -2.448 0.431 C12 A1JEM 12 A1JEM C13 C13 C 0 1 Y N N N N N -8.018 2.246 -42.165 -3.851 -2.105 0.041 C13 A1JEM 13 A1JEM C14 C14 C 0 1 Y N N N N N -8.787 2.141 -43.257 -4.199 -0.803 -0.273 C14 A1JEM 14 A1JEM F01 F1 F 0 1 N N N N N N -8.578 2.176 -40.921 -4.793 -3.071 -0.034 F01 A1JEM 15 A1JEM N01 N1 N 0 1 N N N N N N -5.973 -2.217 -46.415 4.733 -0.448 0.195 N01 A1JEM 16 A1JEM N02 N2 N 0 1 N N N N N N -5.247 -0.060 -46.528 2.508 0.254 0.277 N02 A1JEM 17 A1JEM N03 N3 N 0 1 Y N N N N N -8.680 2.128 -45.750 -3.191 1.491 -0.410 N03 A1JEM 18 A1JEM N04 N4 N 0 1 Y N N N N N -6.383 2.429 -45.858 -1.156 0.963 0.199 N04 A1JEM 19 A1JEM O01 O1 O 0 1 N N N N N N -4.330 -1.466 -45.010 3.129 -1.524 -0.901 O01 A1JEM 20 A1JEM O02 O2 O 0 1 N N N N N N -6.331 1.955 -48.571 -0.288 3.536 0.339 O02 A1JEM 21 A1JEM H01 H1 H 0 1 N N N N N N -6.687 -5.504 -46.290 7.364 0.029 -0.063 H01 A1JEM 22 A1JEM H03 H2 H 0 1 N N N N N N -7.766 -4.147 -46.758 7.089 -1.008 1.357 H03 A1JEM 23 A1JEM H02 H3 H 0 1 N N N N N N -6.298 -4.503 -47.730 7.877 -1.676 -0.093 H02 A1JEM 24 A1JEM H05 H4 H 0 1 N N N N N N -6.350 -3.546 -44.838 5.781 -1.354 -1.379 H05 A1JEM 25 A1JEM H04 H5 H 0 1 N N N N N N -4.882 -3.902 -45.810 5.506 -2.391 0.041 H04 A1JEM 26 A1JEM H09 H6 H 0 1 N N N N N N -4.198 1.042 -45.103 0.753 -0.892 0.215 H09 A1JEM 27 A1JEM H08 H7 H 0 1 N N N N N N -3.480 1.023 -46.750 1.028 0.145 -1.205 H08 A1JEM 28 A1JEM H10 H8 H 0 1 N N N N N N -4.455 3.277 -46.033 0.397 1.173 1.600 H10 A1JEM 29 A1JEM H12 H9 H 0 1 N N N N N N -5.670 3.853 -48.056 1.651 2.821 0.350 H12 A1JEM 30 A1JEM H11 H10 H 0 1 N N N N N N -4.390 2.686 -48.534 0.721 2.492 -1.132 H11 A1JEM 31 A1JEM H13 H11 H 0 1 N N N N N N -8.028 3.199 -48.480 -1.448 3.665 -1.375 H13 A1JEM 32 A1JEM H14 H12 H 0 1 N N N N N N -8.369 1.435 -48.465 -2.285 4.066 0.147 H14 A1JEM 33 A1JEM H15 H13 H 0 1 N N N N N N -4.954 2.597 -43.452 -0.554 -1.785 0.832 H15 A1JEM 34 A1JEM H16 H14 H 0 1 N N N N N N -6.099 2.500 -41.277 -2.347 -3.479 0.666 H16 A1JEM 35 A1JEM H17 H15 H 0 1 N N N N N N -9.859 2.028 -43.190 -5.203 -0.544 -0.575 H17 A1JEM 36 A1JEM H06 H16 H 0 1 N N N N N N -6.619 -1.991 -47.144 4.985 0.285 0.779 H06 A1JEM 37 A1JEM H07 H17 H 0 1 N N N N N N -5.941 0.048 -47.240 2.760 0.986 0.860 H07 A1JEM 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JEM C01 C02 SING N N 1 A1JEM C02 N01 SING N N 2 A1JEM N01 C03 SING N N 3 A1JEM C03 O01 DOUB N N 4 A1JEM C03 N02 SING N N 5 A1JEM N02 C04 SING N N 6 A1JEM C04 C05 SING N N 7 A1JEM C05 C06 SING N N 8 A1JEM C05 N04 SING N N 9 A1JEM C06 O02 SING N N 10 A1JEM O02 C07 SING N N 11 A1JEM C07 C08 SING N N 12 A1JEM C08 N03 DOUB Y N 13 A1JEM C08 N04 SING Y N 14 A1JEM N03 C09 SING Y N 15 A1JEM C09 C10 DOUB Y N 16 A1JEM C09 C14 SING Y N 17 A1JEM C10 C11 SING Y N 18 A1JEM C10 N04 SING Y N 19 A1JEM C11 C12 DOUB Y N 20 A1JEM C12 C13 SING Y N 21 A1JEM C13 F01 SING N N 22 A1JEM C13 C14 DOUB Y N 23 A1JEM C01 H01 SING N N 24 A1JEM C01 H03 SING N N 25 A1JEM C01 H02 SING N N 26 A1JEM C02 H05 SING N N 27 A1JEM C02 H04 SING N N 28 A1JEM C04 H09 SING N N 29 A1JEM C04 H08 SING N N 30 A1JEM C05 H10 SING N N 31 A1JEM C06 H12 SING N N 32 A1JEM C06 H11 SING N N 33 A1JEM C07 H13 SING N N 34 A1JEM C07 H14 SING N N 35 A1JEM C11 H15 SING N N 36 A1JEM C12 H16 SING N N 37 A1JEM C14 H17 SING N N 38 A1JEM N01 H06 SING N N 39 A1JEM N02 H07 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JEM InChI InChI 1.06 "InChI=1S/C14H17FN4O2/c1-2-16-14(20)17-6-10-7-21-8-13-18-11-5-9(15)3-4-12(11)19(10)13/h3-5,10H,2,6-8H2,1H3,(H2,16,17,20)/t10-/m0/s1" A1JEM InChIKey InChI 1.06 FIFQDMOPOWKGIR-JTQLQIEISA-N A1JEM SMILES_CANONICAL CACTVS 3.385 "CCNC(=O)NC[C@H]1COCc2nc3cc(F)ccc3n12" A1JEM SMILES CACTVS 3.385 "CCNC(=O)NC[CH]1COCc2nc3cc(F)ccc3n12" A1JEM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCNC(=O)NC[C@H]1COCc2n1c3ccc(cc3n2)F" A1JEM SMILES "OpenEye OEToolkits" 2.0.7 "CCNC(=O)NCC1COCc2n1c3ccc(cc3n2)F" # _pdbx_chem_comp_identifier.comp_id A1JEM _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-ethyl-3-[[(4~{S})-8-fluoranyl-3,4-dihydro-1~{H}-[1,4]oxazino[4,3-a]benzimidazol-4-yl]methyl]urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JEM "Create component" 2025-06-03 PDBE A1JEM "Initial release" 2025-12-31 RCSB #