data_A1JEQ # _chem_comp.id A1JEQ _chem_comp.name "methyl 2-[(3~{S})-pyrrolidin-3-yl]-1~{H}-benzimidazole-5-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H15 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-06-03 _chem_comp.pdbx_modified_date 2025-12-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 245.277 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JEQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RE8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JEQ C10 C1 C 0 1 N N N N N N -7.541 3.332 -20.551 5.540 0.472 0.836 C10 A1JEQ 1 A1JEQ C13 C2 C 0 1 Y N N N N N -14.339 1.920 -19.331 -2.236 -1.395 0.200 C13 A1JEQ 2 A1JEQ C12 C3 C 0 1 Y N N N N N -13.108 1.429 -19.055 -0.937 -1.814 0.209 C12 A1JEQ 3 A1JEQ C11 C4 C 0 1 N N N N N N -8.223 4.965 -19.070 4.241 -0.629 -0.851 C11 A1JEQ 4 A1JEQ C01 C5 C 0 1 N N N N N N -17.138 5.669 -20.443 -6.302 0.001 0.145 C01 A1JEQ 5 A1JEQ C02 C6 C 0 1 N N N N N N -15.902 3.727 -19.888 -3.953 0.396 -0.013 C02 A1JEQ 6 A1JEQ C03 C7 C 0 1 Y N N N N N -14.527 3.274 -19.522 -2.545 -0.043 -0.002 C03 A1JEQ 7 A1JEQ C04 C8 C 0 1 Y N N N N N -13.476 4.150 -19.439 -1.526 0.887 -0.190 C04 A1JEQ 8 A1JEQ C05 C9 C 0 1 Y N N N N N -12.263 3.640 -19.173 -0.198 0.463 -0.177 C05 A1JEQ 9 A1JEQ C06 C10 C 0 1 Y N N N N N -12.099 2.307 -18.986 0.093 -0.899 0.022 C06 A1JEQ 10 A1JEQ C07 C11 C 0 1 Y N N N N N -10.108 3.336 -18.763 1.963 0.247 -0.229 C07 A1JEQ 11 A1JEQ C08 C12 C 0 1 N N S N N N -8.665 3.601 -18.523 3.427 0.586 -0.342 C08 A1JEQ 12 A1JEQ C09 C13 C 0 1 N N N N N N -7.786 2.588 -19.253 4.053 0.818 1.059 C09 A1JEQ 13 A1JEQ N01 N1 N 0 1 Y N N N N N -10.737 2.038 -18.731 1.467 -1.002 -0.017 N01 A1JEQ 14 A1JEQ N02 N2 N 0 1 Y N N N N N -11.050 4.300 -19.045 0.990 1.104 -0.327 N02 A1JEQ 15 A1JEQ N03 N3 N 0 1 N N N N N N -7.174 4.651 -20.042 5.613 -0.402 -0.349 N03 A1JEQ 16 A1JEQ O01 O1 O 0 1 N N N N N N -15.932 5.082 -19.992 -4.940 -0.502 0.169 O01 A1JEQ 17 A1JEQ O02 O2 O 0 1 N N N N N N -16.855 2.998 -20.164 -4.223 1.568 -0.188 O02 A1JEQ 18 A1JEQ H10 H1 H 0 1 N N N N N N -6.723 2.879 -21.130 6.111 1.384 0.660 H10 A1JEQ 19 A1JEQ H09 H2 H 0 1 N N N N N N -8.449 3.375 -21.171 5.936 -0.050 1.707 H09 A1JEQ 20 A1JEQ H15 H3 H 0 1 N N N N N N -15.181 1.247 -19.402 -3.031 -2.111 0.346 H15 A1JEQ 21 A1JEQ H14 H4 H 0 1 N N N N N N -12.946 0.373 -18.897 -0.709 -2.859 0.361 H14 A1JEQ 22 A1JEQ H12 H5 H 0 1 N N N N N N -9.064 5.478 -19.559 3.836 -1.555 -0.442 H12 A1JEQ 23 A1JEQ H13 H6 H 0 1 N N N N N N -7.827 5.598 -18.262 4.234 -0.661 -1.940 H13 A1JEQ 24 A1JEQ H02 H7 H 0 1 N N N N N N -17.023 6.762 -20.480 -6.430 0.741 0.935 H02 A1JEQ 25 A1JEQ H01 H8 H 0 1 N N N N N N -17.376 5.292 -21.449 -6.502 0.463 -0.821 H01 A1JEQ 26 A1JEQ H03 H9 H 0 1 N N N N N N -17.953 5.409 -19.752 -6.997 -0.824 0.304 H03 A1JEQ 27 A1JEQ H04 H10 H 0 1 N N N N N N -13.618 5.211 -19.582 -1.763 1.929 -0.346 H04 A1JEQ 28 A1JEQ H06 H11 H 0 1 N N N N N N -8.452 3.557 -17.445 3.576 1.454 -0.985 H06 A1JEQ 29 A1JEQ H08 H12 H 0 1 N N N N N N -6.849 2.396 -18.710 3.608 0.150 1.796 H08 A1JEQ 30 A1JEQ H07 H13 H 0 1 N N N N N N -8.313 1.638 -19.421 3.941 1.859 1.363 H07 A1JEQ 31 A1JEQ H05 H14 H 0 1 N N N N N N -10.307 1.151 -18.566 1.985 -1.816 0.089 H05 A1JEQ 32 A1JEQ H2 H16 H 0 1 N N N N N N -6.277 4.624 -19.600 6.196 0.005 -1.064 H2 A1JEQ 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JEQ C01 O01 SING N N 1 A1JEQ O01 C02 SING N N 2 A1JEQ C02 O02 DOUB N N 3 A1JEQ C02 C03 SING N N 4 A1JEQ C03 C04 DOUB Y N 5 A1JEQ C03 C13 SING Y N 6 A1JEQ C04 C05 SING Y N 7 A1JEQ C05 C06 DOUB Y N 8 A1JEQ C05 N02 SING Y N 9 A1JEQ C06 N01 SING Y N 10 A1JEQ C06 C12 SING Y N 11 A1JEQ N01 C07 SING Y N 12 A1JEQ C07 N02 DOUB Y N 13 A1JEQ C07 C08 SING N N 14 A1JEQ C08 C09 SING N N 15 A1JEQ C08 C11 SING N N 16 A1JEQ C09 C10 SING N N 17 A1JEQ C10 N03 SING N N 18 A1JEQ N03 C11 SING N N 19 A1JEQ C12 C13 DOUB Y N 20 A1JEQ C10 H10 SING N N 21 A1JEQ C10 H09 SING N N 22 A1JEQ C13 H15 SING N N 23 A1JEQ C12 H14 SING N N 24 A1JEQ C11 H12 SING N N 25 A1JEQ C11 H13 SING N N 26 A1JEQ C01 H02 SING N N 27 A1JEQ C01 H01 SING N N 28 A1JEQ C01 H03 SING N N 29 A1JEQ C04 H04 SING N N 30 A1JEQ C08 H06 SING N N 31 A1JEQ C09 H08 SING N N 32 A1JEQ C09 H07 SING N N 33 A1JEQ N01 H05 SING N N 34 A1JEQ N03 H2 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JEQ InChI InChI 1.06 "InChI=1S/C13H15N3O2/c1-18-13(17)8-2-3-10-11(6-8)16-12(15-10)9-4-5-14-7-9/h2-3,6,9,14H,4-5,7H2,1H3,(H,15,16)/t9-/m0/s1" A1JEQ InChIKey InChI 1.06 FBNLOINYSAGAMH-VIFPVBQESA-N A1JEQ SMILES_CANONICAL CACTVS 3.385 "COC(=O)c1ccc2[nH]c(nc2c1)[C@H]3CCNC3" A1JEQ SMILES CACTVS 3.385 "COC(=O)c1ccc2[nH]c(nc2c1)[CH]3CCNC3" A1JEQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COC(=O)c1ccc2c(c1)nc([nH]2)[C@H]3CCNC3" A1JEQ SMILES "OpenEye OEToolkits" 2.0.7 "COC(=O)c1ccc2c(c1)nc([nH]2)C3CCNC3" # _pdbx_chem_comp_identifier.comp_id A1JEQ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "methyl 2-[(3~{S})-pyrrolidin-3-yl]-1~{H}-benzimidazole-5-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JEQ "Create component" 2025-06-03 PDBE A1JEQ "Initial release" 2025-12-31 RCSB #