data_A1JFB # _chem_comp.id A1JFB _chem_comp.name Zilurgisertib _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H40 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-azanyl-5-[4-[(1~{R},5~{S})-3-(oxan-4-yl)-3-azabicyclo[3.1.0]hexan-1-yl]cyclohexa-1,4-dien-1-yl]-~{N}-(4-oxidanyl-1-bicyclo[2.2.2]octanyl)pyridine-3-carboxamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-06-04 _chem_comp.pdbx_modified_date 2025-11-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 504.664 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JFB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RDA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JFB C1 C1 C 0 1 Y N N N N N 10.807 -14.418 -5.434 -3.575 3.460 -0.027 C1 A1JFB 1 A1JFB C2 C2 C 0 1 Y N N N N N 9.725 -13.579 -5.749 -3.068 2.149 -0.067 C2 A1JFB 2 A1JFB C3 C3 C 0 1 Y N N N N N 9.021 -12.928 -4.710 -1.686 1.961 -0.142 C3 A1JFB 3 A1JFB C11 C4 C 0 1 N N N N N N 7.573 -11.312 0.049 3.315 2.267 -0.187 C11 A1JFB 4 A1JFB C12 C5 C 0 1 N N N N N N 7.388 -10.795 -1.237 2.605 2.225 -1.506 C12 A1JFB 5 A1JFB C13 C6 C 0 1 N N N N N N 7.930 -11.432 -2.350 1.128 2.412 -1.333 C13 A1JFB 6 A1JFB C14 C7 C 0 1 N N R N N N 7.006 -10.560 1.265 4.695 1.667 -0.094 C14 A1JFB 7 A1JFB C15 C8 C 0 1 N N N N N N 9.395 -13.280 -7.194 -3.980 0.991 -0.030 C15 A1JFB 8 A1JFB C17 C9 C 0 1 N N N N N N 7.989 -9.605 1.955 4.919 0.285 -0.744 C17 A1JFB 9 A1JFB C19 C10 C 0 1 N N N N N N 6.712 -10.549 3.723 6.115 0.212 1.271 C19 A1JFB 10 A1JFB C20 C11 C 0 1 N N S N N N 6.258 -11.246 2.422 5.469 1.614 1.239 C20 A1JFB 11 A1JFB C21 C12 C 0 1 N N N N N N 5.496 -10.325 1.434 5.905 2.586 0.085 C21 A1JFB 12 A1JFB C22 C13 C 0 1 N N N N N N 8.560 -8.810 4.280 5.945 -1.817 -0.068 C22 A1JFB 13 A1JFB C23 C14 C 0 1 N N N N N N 8.576 -9.241 5.776 6.253 -2.722 1.129 C23 A1JFB 14 A1JFB C24 C15 C 0 1 N N N N N N 9.321 -8.195 6.647 6.923 -4.005 0.630 C24 A1JFB 15 A1JFB C26 C16 C 0 1 N N N N N N 10.654 -7.342 4.794 5.781 -3.872 -1.475 C26 A1JFB 16 A1JFB C27 C17 C 0 1 N N N N N N 9.932 -8.257 3.763 5.066 -2.583 -1.061 C27 A1JFB 17 A1JFB C29 C18 C 0 1 N N N N N N 9.342 -10.953 -11.129 -6.251 -2.498 1.348 C29 A1JFB 18 A1JFB C30 C19 C 0 1 N N N N N N 7.801 -10.725 -11.253 -5.965 -3.411 0.154 C30 A1JFB 19 A1JFB C4 C20 C 0 1 Y N N N N N 9.363 -13.198 -3.383 -0.866 3.092 -0.174 C4 A1JFB 20 A1JFB C5 C21 C 0 1 Y N N N N N 10.440 -14.042 -3.152 -1.451 4.359 -0.131 C5 A1JFB 21 A1JFB N6 N1 N 0 1 Y N N N N N 11.155 -14.577 -4.148 -2.758 4.501 -0.060 N6 A1JFB 22 A1JFB N7 N2 N 0 1 N N N N N N 11.600 -15.051 -6.353 -4.940 3.663 0.042 N7 A1JFB 23 A1JFB C8 C22 C 0 1 N N N N N N 8.717 -12.564 -2.194 0.603 2.948 -0.253 C8 A1JFB 24 A1JFB C9 C23 C 0 1 N N N N N N 8.916 -13.089 -0.905 1.435 3.420 0.901 C9 A1JFB 25 A1JFB C10 C24 C 0 1 N N N N N N 8.347 -12.467 0.215 2.799 2.801 0.877 C10 A1JFB 26 A1JFB O16 O1 O 0 1 N N N N N N 9.776 -14.079 -8.041 -5.183 1.163 -0.073 O16 A1JFB 27 A1JFB N18 N3 N 0 1 N N N N N N 8.001 -9.880 3.399 5.234 -0.617 0.393 N18 A1JFB 28 A1JFB O25 O2 O 0 1 N N N N N N 10.640 -7.953 6.105 6.066 -4.653 -0.312 O25 A1JFB 29 A1JFB N28 N4 N 0 1 N N N N N N 8.756 -12.120 -7.464 -3.481 -0.258 0.053 N28 A1JFB 30 A1JFB C31 C25 C 0 1 N N N N N N 7.345 -9.692 -10.163 -4.517 -3.900 0.222 C31 A1JFB 31 A1JFB C32 C26 C 0 1 N N N N N N 7.738 -10.224 -8.738 -3.570 -2.699 0.184 C32 A1JFB 32 A1JFB C33 C27 C 0 1 N N N N N N 8.395 -11.658 -8.804 -4.387 -1.409 0.090 C33 A1JFB 33 A1JFB C34 C28 C 0 1 N N N N N N 9.696 -11.476 -9.685 -5.304 -1.296 1.309 C34 A1JFB 34 A1JFB C35 C29 C 0 1 N N N N N N 7.346 -12.579 -9.507 -5.234 -1.432 -1.185 C35 A1JFB 35 A1JFB C36 C30 C 0 1 N N N N N N 7.105 -12.107 -10.985 -6.180 -2.634 -1.146 C36 A1JFB 36 A1JFB O37 O3 O 0 1 N N N N N N 7.477 -10.257 -12.570 -6.849 -4.533 0.190 O37 A1JFB 37 A1JFB H1 H1 H 0 1 N N N N N N 8.229 -12.231 -4.940 -1.262 0.968 -0.174 H1 A1JFB 38 A1JFB H2 H2 H 0 1 N N N N N N 6.301 -10.748 -1.402 2.993 3.017 -2.146 H2 A1JFB 39 A1JFB H3 H3 H 0 1 N N N N N N 7.802 -9.776 -1.227 2.790 1.261 -1.981 H3 A1JFB 40 A1JFB H4 H4 H 0 1 N N N N N N 7.737 -11.043 -3.339 0.468 2.094 -2.126 H4 A1JFB 41 A1JFB H5 H5 H 0 1 N N N N N N 8.998 -9.756 1.544 4.015 -0.047 -1.253 H5 A1JFB 42 A1JFB H6 H6 H 0 1 N N N N N N 7.674 -8.565 1.782 5.756 0.325 -1.441 H6 A1JFB 43 A1JFB H7 H7 H 0 1 N N N N N N 6.856 -11.289 4.524 7.136 0.255 0.892 H7 A1JFB 44 A1JFB H8 H8 H 0 1 N N N N N N 5.965 -9.807 4.040 6.104 -0.188 2.285 H8 A1JFB 45 A1JFB H9 H9 H 0 1 N N N N N N 6.087 -12.333 2.406 5.043 1.995 2.167 H9 A1JFB 46 A1JFB H10 H10 H 0 1 N N N N N N 5.125 -9.345 1.769 6.813 2.332 -0.462 H10 A1JFB 47 A1JFB H11 H11 H 0 1 N N N N N N 4.787 -10.758 0.713 5.714 3.651 0.208 H11 A1JFB 48 A1JFB H12 H12 H 0 1 N N N N N N 7.860 -7.964 4.222 6.876 -1.526 -0.554 H12 A1JFB 49 A1JFB H13 H13 H 0 1 N N N N N N 7.540 -9.336 6.134 6.924 -2.204 1.814 H13 A1JFB 50 A1JFB H14 H14 H 0 1 N N N N N N 9.085 -10.212 5.865 5.326 -2.972 1.645 H14 A1JFB 51 A1JFB H15 H15 H 0 1 N N N N N N 8.751 -7.254 6.654 7.870 -3.758 0.150 H15 A1JFB 52 A1JFB H16 H16 H 0 1 N N N N N N 9.413 -8.576 7.675 7.105 -4.671 1.473 H16 A1JFB 53 A1JFB H17 H17 H 0 1 N N N N N N 10.139 -6.371 4.841 5.142 -4.442 -2.148 H17 A1JFB 54 A1JFB H18 H18 H 0 1 N N N N N N 11.696 -7.189 4.476 6.713 -3.623 -1.983 H18 A1JFB 55 A1JFB H19 H19 H 0 1 N N N N N N 10.588 -9.110 3.533 4.115 -2.831 -0.589 H19 A1JFB 56 A1JFB H20 H20 H 0 1 N N N N N N 9.751 -7.676 2.847 4.887 -1.966 -1.941 H20 A1JFB 57 A1JFB H21 H21 H 0 1 N N N N N N 9.661 -11.697 -11.874 -7.283 -2.149 1.299 H21 A1JFB 58 A1JFB H22 H22 H 0 1 N N N N N N 9.866 -10.003 -11.311 -6.098 -3.051 2.274 H22 A1JFB 59 A1JFB H23 H23 H 0 1 N N N N N N 10.710 -14.275 -2.133 -0.821 5.236 -0.155 H23 A1JFB 60 A1JFB H24 H24 H 0 1 N N N N N N 12.332 -15.542 -5.880 -5.547 2.908 -0.020 H24 A1JFB 61 A1JFB H25 H25 H 0 1 N N N N N N 11.049 -15.699 -6.879 -5.292 4.560 0.152 H25 A1JFB 62 A1JFB H26 H26 H 0 1 N N N N N N 8.531 -14.119 -0.922 1.538 4.504 0.849 H26 A1JFB 63 A1JFB H27 H27 H 0 1 N N N N N N 10.003 -13.106 -0.737 0.936 3.155 1.834 H27 A1JFB 64 A1JFB H28 H28 H 0 1 N N N N N N 8.505 -12.877 1.202 3.377 2.791 1.790 H28 A1JFB 65 A1JFB H30 H30 H 0 1 N N N N N N 8.512 -11.535 -6.691 -2.521 -0.396 0.088 H30 A1JFB 66 A1JFB H31 H31 H 0 1 N N N N N N 7.840 -8.727 -10.343 -4.363 -4.454 1.148 H31 A1JFB 67 A1JFB H32 H32 H 0 1 N N N N N N 6.254 -9.560 -10.217 -4.313 -4.551 -0.628 H32 A1JFB 68 A1JFB H33 H33 H 0 1 N N N N N N 8.455 -9.525 -8.283 -2.967 -2.682 1.091 H33 A1JFB 69 A1JFB H34 H34 H 0 1 N N N N N N 6.832 -10.276 -8.116 -2.917 -2.779 -0.685 H34 A1JFB 70 A1JFB H35 H35 H 0 1 N N N N N N 10.209 -12.445 -9.771 -5.886 -0.377 1.242 H35 A1JFB 71 A1JFB H36 H36 H 0 1 N N N N N N 10.362 -10.751 -9.195 -4.701 -1.279 2.217 H36 A1JFB 72 A1JFB H37 H37 H 0 1 N N N N N N 7.719 -13.614 -9.513 -5.816 -0.513 -1.251 H37 A1JFB 73 A1JFB H38 H38 H 0 1 N N N N N N 6.397 -12.535 -8.953 -4.580 -1.512 -2.053 H38 A1JFB 74 A1JFB H39 H39 H 0 1 N N N N N N 6.024 -12.005 -11.159 -5.976 -3.284 -1.996 H39 A1JFB 75 A1JFB H40 H40 H 0 1 N N N N N N 7.518 -12.858 -11.675 -7.212 -2.285 -1.194 H40 A1JFB 76 A1JFB H41 H41 H 0 1 N N N N N N 6.539 -10.121 -12.636 -6.724 -5.156 -0.539 H41 A1JFB 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JFB C1 C2 DOUB Y N 1 A1JFB C1 N6 SING Y N 2 A1JFB C1 N7 SING N N 3 A1JFB C2 C3 SING Y N 4 A1JFB C2 C15 SING N N 5 A1JFB C3 C4 DOUB Y N 6 A1JFB C4 C5 SING Y N 7 A1JFB C4 C8 SING N N 8 A1JFB C5 N6 DOUB Y N 9 A1JFB C8 C9 SING N N 10 A1JFB C8 C13 DOUB N N 11 A1JFB C9 C10 SING N N 12 A1JFB C10 C11 DOUB N N 13 A1JFB C11 C12 SING N N 14 A1JFB C11 C14 SING N N 15 A1JFB C12 C13 SING N N 16 A1JFB C14 C17 SING N N 17 A1JFB C14 C20 SING N N 18 A1JFB C14 C21 SING N N 19 A1JFB C15 O16 DOUB N N 20 A1JFB C15 N28 SING N N 21 A1JFB C17 N18 SING N N 22 A1JFB N18 C19 SING N N 23 A1JFB N18 C22 SING N N 24 A1JFB C19 C20 SING N N 25 A1JFB C20 C21 SING N N 26 A1JFB C22 C23 SING N N 27 A1JFB C22 C27 SING N N 28 A1JFB C23 C24 SING N N 29 A1JFB C24 O25 SING N N 30 A1JFB O25 C26 SING N N 31 A1JFB C26 C27 SING N N 32 A1JFB N28 C33 SING N N 33 A1JFB C29 C30 SING N N 34 A1JFB C29 C34 SING N N 35 A1JFB C30 C31 SING N N 36 A1JFB C30 C36 SING N N 37 A1JFB C30 O37 SING N N 38 A1JFB C31 C32 SING N N 39 A1JFB C32 C33 SING N N 40 A1JFB C33 C34 SING N N 41 A1JFB C33 C35 SING N N 42 A1JFB C35 C36 SING N N 43 A1JFB C3 H1 SING N N 44 A1JFB C12 H2 SING N N 45 A1JFB C12 H3 SING N N 46 A1JFB C13 H4 SING N N 47 A1JFB C17 H5 SING N N 48 A1JFB C17 H6 SING N N 49 A1JFB C19 H7 SING N N 50 A1JFB C19 H8 SING N N 51 A1JFB C20 H9 SING N N 52 A1JFB C21 H10 SING N N 53 A1JFB C21 H11 SING N N 54 A1JFB C22 H12 SING N N 55 A1JFB C23 H13 SING N N 56 A1JFB C23 H14 SING N N 57 A1JFB C24 H15 SING N N 58 A1JFB C24 H16 SING N N 59 A1JFB C26 H17 SING N N 60 A1JFB C26 H18 SING N N 61 A1JFB C27 H19 SING N N 62 A1JFB C27 H20 SING N N 63 A1JFB C29 H21 SING N N 64 A1JFB C29 H22 SING N N 65 A1JFB C5 H23 SING N N 66 A1JFB N7 H24 SING N N 67 A1JFB N7 H25 SING N N 68 A1JFB C9 H26 SING N N 69 A1JFB C9 H27 SING N N 70 A1JFB C10 H28 SING N N 71 A1JFB N28 H30 SING N N 72 A1JFB C31 H31 SING N N 73 A1JFB C31 H32 SING N N 74 A1JFB C32 H33 SING N N 75 A1JFB C32 H34 SING N N 76 A1JFB C34 H35 SING N N 77 A1JFB C34 H36 SING N N 78 A1JFB C35 H37 SING N N 79 A1JFB C35 H38 SING N N 80 A1JFB C36 H39 SING N N 81 A1JFB C36 H40 SING N N 82 A1JFB O37 H41 SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JFB InChI InChI 1.06 "InChI=1S/C30H40N4O3/c31-26-25(27(35)33-28-7-10-29(36,11-8-28)12-9-28)15-21(17-32-26)20-1-3-22(4-2-20)30-16-23(30)18-34(19-30)24-5-13-37-14-6-24/h1,4,15,17,23-24,36H,2-3,5-14,16,18-19H2,(H2,31,32)(H,33,35)/t23-,28-,29+,30+/m1/s1" A1JFB InChIKey InChI 1.06 FZBUJPGOPVXCQM-HYPLZALKSA-N A1JFB SMILES_CANONICAL CACTVS 3.385 "Nc1ncc(cc1C(=O)NC23CCC(O)(CC2)CC3)C4=CCC(=CC4)[C@@]56C[C@@H]5CN(C6)C7CCOCC7" A1JFB SMILES CACTVS 3.385 "Nc1ncc(cc1C(=O)NC23CCC(O)(CC2)CC3)C4=CCC(=CC4)[C]56C[CH]5CN(C6)C7CCOCC7" A1JFB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cnc(c1C(=O)NC23CCC(CC2)(CC3)O)N)C4=CCC(=CC4)[C@@]56C[C@@H]5CN(C6)C7CCOCC7" A1JFB SMILES "OpenEye OEToolkits" 2.0.7 "c1c(cnc(c1C(=O)NC23CCC(CC2)(CC3)O)N)C4=CCC(=CC4)C56CC5CN(C6)C7CCOCC7" # _pdbx_chem_comp_identifier.comp_id A1JFB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-azanyl-5-[4-[(1~{R},5~{S})-3-(oxan-4-yl)-3-azabicyclo[3.1.0]hexan-1-yl]cyclohexa-1,4-dien-1-yl]-~{N}-(4-oxidanyl-1-bicyclo[2.2.2]octanyl)pyridine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JFB "Create component" 2025-06-04 PDBE A1JFB "Initial release" 2025-11-12 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1JFB _pdbx_chem_comp_synonyms.name "2-azanyl-5-[4-[(1~{R},5~{S})-3-(oxan-4-yl)-3-azabicyclo[3.1.0]hexan-1-yl]cyclohexa-1,4-dien-1-yl]-~{N}-(4-oxidanyl-1-bicyclo[2.2.2]octanyl)pyridine-3-carboxamide" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #