data_A1JG0 # _chem_comp.id A1JG0 _chem_comp.name "~{N}-[(2~{Z},5~{R},6~{S},9~{S},10~{S},11~{R})-2-butan-2-ylidene-5,11-dimethyl-10-oxidanyl-3,7,12-tris(oxidanylidene)-9-(pyridin-3-ylmethyl)-1,4-dioxa-8-azacyclododec-6-yl]-2,3-bis(oxidanyl)benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H33 N3 O9" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-06-16 _chem_comp.pdbx_modified_date 2026-02-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 555.576 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JG0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RJJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JG0 C4 C1 C 0 1 N N N N N N -27.488 -11.446 86.637 -5.521 3.519 -0.263 C4 A1JG0 1 A1JG0 C5 C2 C 0 1 N N N N N N -25.669 -13.053 85.999 -4.453 1.298 -0.292 C5 A1JG0 2 A1JG0 C7 C3 C 0 1 N N N N N N -23.518 -13.348 84.972 -3.594 -0.844 0.061 C7 A1JG0 3 A1JG0 C10 C4 C 0 1 N N N N N N -21.343 -12.924 86.054 -4.726 -2.998 -0.405 C10 A1JG0 4 A1JG0 C13 C5 C 0 1 N N S N N N -21.899 -15.686 83.376 -0.939 -2.529 -0.075 C13 A1JG0 5 A1JG0 C15 C6 C 0 1 Y N N N N N -21.640 -17.230 81.355 1.440 -3.218 -0.238 C15 A1JG0 6 A1JG0 C17 C7 C 0 1 Y N N N N N -22.968 -18.145 79.584 3.545 -2.150 0.083 C17 A1JG0 7 A1JG0 C20 C8 C 0 1 Y N N N N N -21.431 -18.531 81.779 1.851 -3.558 -1.513 C20 A1JG0 8 A1JG0 C22 C9 C 0 1 N N N N N N -24.218 -16.482 83.475 -0.085 -0.289 -0.107 C22 A1JG0 9 A1JG0 C24 C10 C 0 1 N N S N N N -25.636 -16.329 82.924 0.278 1.016 0.559 C24 A1JG0 10 A1JG0 C26 C11 C 0 1 N N N N N N -26.366 -17.633 80.994 2.713 1.026 0.614 C26 A1JG0 11 A1JG0 C28 C12 C 0 1 Y N N N N N -26.348 -18.985 80.363 4.018 1.492 0.108 C28 A1JG0 12 A1JG0 C1 C13 C 0 1 N N N N N N -25.194 -11.797 88.928 -7.609 1.089 0.669 C1 A1JG0 13 A1JG0 C2 C14 C 0 1 N N N N N N -25.182 -11.220 87.544 -6.890 1.332 -0.660 C2 A1JG0 14 A1JG0 C3 C15 C 0 1 N N N N N N -26.078 -11.972 86.682 -5.574 2.019 -0.400 C3 A1JG0 15 A1JG0 O6 O1 O 0 1 N N N N N N -24.337 -13.474 86.073 -4.481 -0.032 -0.526 O6 A1JG0 16 A1JG0 O8 O2 O 0 1 N N N N N N -23.882 -12.850 83.944 -2.958 -0.460 1.012 O8 A1JG0 17 A1JG0 C9 C16 C 0 1 N N R N N N -22.150 -13.936 85.247 -3.397 -2.239 -0.475 C9 A1JG0 18 A1JG0 C11 C17 C 0 1 N N S N N N -21.422 -14.363 83.960 -2.339 -2.992 0.327 C11 A1JG0 19 A1JG0 O12 O3 O 0 1 N N N N N N -21.475 -13.338 82.972 -2.541 -2.805 1.727 O12 A1JG0 20 A1JG0 C14 C18 C 0 1 N N N N N N -21.080 -16.061 82.127 0.077 -3.627 0.259 C14 A1JG0 21 A1JG0 C16 C19 C 0 1 Y N N N N N -22.427 -17.051 80.232 2.299 -2.500 0.580 C16 A1JG0 22 A1JG0 C18 C20 C 0 1 Y N N N N N -22.697 -19.398 80.087 3.887 -2.526 -1.202 C18 A1JG0 23 A1JG0 N19 N1 N 0 1 Y N N N N N -21.940 -19.607 81.171 3.044 -3.209 -1.952 N19 A1JG0 24 A1JG0 N21 N2 N 0 1 N N N N N N -23.315 -15.597 83.037 -0.602 -1.293 0.677 N21 A1JG0 25 A1JG0 O23 O4 O 0 1 N N N N N N -23.924 -17.430 84.200 0.078 -0.441 -1.299 O23 A1JG0 26 A1JG0 N25 N3 N 0 1 N N N N N N -25.924 -17.578 82.252 1.573 1.478 0.056 N25 A1JG0 27 A1JG0 O27 O5 O 0 1 N N N N N N -26.731 -16.640 80.373 2.666 0.234 1.536 O27 A1JG0 28 A1JG0 C29 C21 C 0 1 Y N N N N N -26.457 -19.012 78.976 4.076 2.403 -0.950 C29 A1JG0 29 A1JG0 C30 C22 C 0 1 Y N N N N N -26.251 -20.194 78.285 5.297 2.836 -1.421 C30 A1JG0 30 A1JG0 C31 C23 C 0 1 Y N N N N N -25.942 -21.363 78.959 6.471 2.374 -0.850 C31 A1JG0 31 A1JG0 C32 C24 C 0 1 Y N N N N N -25.838 -21.365 80.341 6.430 1.471 0.199 C32 A1JG0 32 A1JG0 O33 O6 O 0 1 N N N N N N -25.604 -22.539 80.977 7.587 1.021 0.755 O33 A1JG0 33 A1JG0 C34 C25 C 0 1 Y N N N N N -26.032 -20.181 81.056 5.205 1.029 0.689 C34 A1JG0 34 A1JG0 O35 O7 O 0 1 N N N N N N -25.819 -20.191 82.395 5.161 0.144 1.718 O35 A1JG0 35 A1JG0 C36 C26 C 0 1 N N R N N N -26.674 -15.996 84.001 -0.798 2.059 0.239 C36 A1JG0 36 A1JG0 C37 C27 C 0 1 N N N N N N -27.203 -17.186 84.768 -0.308 2.960 -0.897 C37 A1JG0 37 A1JG0 O38 O8 O 0 1 N N N N N N -25.988 -15.113 84.939 -2.012 1.378 -0.165 O38 A1JG0 38 A1JG0 C39 C28 C 0 1 N N N N N N -26.548 -13.912 85.166 -3.191 1.992 0.031 C39 A1JG0 39 A1JG0 O40 O9 O 0 1 N N N N N N -27.627 -13.586 84.736 -3.230 3.120 0.486 O40 A1JG0 40 A1JG0 H4B H1 H 0 1 N N N N N N -28.092 -12.072 85.964 -6.504 3.938 -0.475 H4B A1JG0 41 A1JG0 H4C H2 H 0 1 N N N N N N -27.921 -11.471 87.648 -5.226 3.781 0.753 H4C A1JG0 42 A1JG0 H4A H3 H 0 1 N N N N N N -27.481 -10.410 86.266 -4.794 3.923 -0.968 H4A A1JG0 43 A1JG0 H10C H4 H 0 0 N N N N N N -20.344 -13.334 86.264 -5.473 -2.478 -1.004 H10C A1JG0 44 A1JG0 H10A H5 H 0 0 N N N N N N -21.243 -11.992 85.478 -4.588 -4.008 -0.791 H10A A1JG0 45 A1JG0 H10B H6 H 0 0 N N N N N N -21.860 -12.715 87.002 -5.061 -3.048 0.631 H10B A1JG0 46 A1JG0 H13 H7 H 0 1 N N N N N N -21.755 -16.472 84.131 -0.916 -2.332 -1.148 H13 A1JG0 47 A1JG0 H17 H8 H 0 1 N N N N N N -23.586 -18.021 78.707 4.240 -1.591 0.692 H17 A1JG0 48 A1JG0 H20 H9 H 0 1 N N N N N N -20.819 -18.686 82.655 1.188 -4.118 -2.156 H20 A1JG0 49 A1JG0 H24 H10 H 0 1 N N N N N N -25.632 -15.512 82.187 0.334 0.870 1.637 H24 A1JG0 50 A1JG0 H1B H11 H 0 1 N N N N N N -24.513 -11.221 89.572 -6.990 0.459 1.307 H1B A1JG0 51 A1JG0 H1A H12 H 0 1 N N N N N N -26.214 -11.748 89.337 -7.789 2.043 1.164 H1A A1JG0 52 A1JG0 H1C H13 H 0 1 N N N N N N -24.864 -12.846 88.891 -8.561 0.592 0.481 H1C A1JG0 53 A1JG0 H2A H14 H 0 1 N N N N N N -25.511 -10.171 87.584 -6.710 0.378 -1.156 H2A A1JG0 54 A1JG0 H2B H15 H 0 1 N N N N N N -24.161 -11.269 87.138 -7.509 1.963 -1.298 H2B A1JG0 55 A1JG0 H9 H16 H 0 1 N N N N N N -22.284 -14.833 85.869 -3.081 -2.176 -1.520 H9 A1JG0 56 A1JG0 H11 H17 H 0 1 N N N N N N -20.367 -14.506 84.235 -2.428 -4.063 0.105 H11 A1JG0 57 A1JG0 H12 H18 H 0 1 N N N N N N -22.309 -12.887 83.028 -3.399 -3.115 2.045 H12 A1JG0 58 A1JG0 H14B H19 H 0 0 N N N N N N -21.049 -15.188 81.459 0.112 -3.772 1.339 H14B A1JG0 59 A1JG0 H14A H20 H 0 0 N N N N N N -20.058 -16.315 82.446 -0.222 -4.557 -0.224 H14A A1JG0 60 A1JG0 H16 H21 H 0 1 N N N N N N -22.619 -16.055 79.861 2.004 -2.220 1.581 H16 A1JG0 61 A1JG0 H18 H22 H 0 1 N N N N N N -23.116 -20.255 79.581 4.856 -2.257 -1.597 H18 A1JG0 62 A1JG0 H21 H23 H 0 1 N N N N N N -23.623 -14.845 82.454 -0.726 -1.199 1.637 H21 A1JG0 63 A1JG0 H25 H24 H 0 1 N N N N N N -25.786 -18.434 82.750 1.610 2.111 -0.679 H25 A1JG0 64 A1JG0 H29 H25 H 0 1 N N N N N N -26.703 -18.109 78.437 3.164 2.767 -1.400 H29 A1JG0 65 A1JG0 H30 H26 H 0 1 N N N N N N -26.332 -20.204 77.208 5.338 3.540 -2.239 H30 A1JG0 66 A1JG0 H31 H27 H 0 1 N N N N N N -25.781 -22.277 78.406 7.423 2.718 -1.225 H31 A1JG0 67 A1JG0 H33 H28 H 0 1 N N N N N N -25.558 -22.388 81.914 7.905 1.560 1.492 H33 A1JG0 68 A1JG0 H35 H29 H 0 1 N N N N N N -25.987 -19.326 82.749 5.136 0.558 2.592 H35 A1JG0 69 A1JG0 H36 H30 H 0 1 N N N N N N -27.516 -15.464 83.533 -0.991 2.663 1.125 H36 A1JG0 70 A1JG0 H37B H31 H 0 0 N N N N N N -27.937 -16.846 85.513 -0.112 2.355 -1.782 H37B A1JG0 71 A1JG0 H37A H32 H 0 0 N N N N N N -27.686 -17.886 84.071 -1.071 3.703 -1.127 H37A A1JG0 72 A1JG0 H37C H33 H 0 0 N N N N N N -26.371 -17.693 85.278 0.609 3.464 -0.591 H37C A1JG0 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JG0 C1 C2 SING N N 1 A1JG0 C2 C3 SING N N 2 A1JG0 C3 C4 SING N N 3 A1JG0 C3 C5 DOUB N Z 4 A1JG0 C5 O6 SING N N 5 A1JG0 O6 C7 SING N N 6 A1JG0 C7 O8 DOUB N N 7 A1JG0 C7 C9 SING N N 8 A1JG0 C9 C10 SING N N 9 A1JG0 C9 C11 SING N N 10 A1JG0 C11 O12 SING N N 11 A1JG0 C11 C13 SING N N 12 A1JG0 C13 C14 SING N N 13 A1JG0 C14 C15 SING N N 14 A1JG0 C15 C16 DOUB Y N 15 A1JG0 C16 C17 SING Y N 16 A1JG0 C17 C18 DOUB Y N 17 A1JG0 C18 N19 SING Y N 18 A1JG0 N19 C20 DOUB Y N 19 A1JG0 C13 N21 SING N N 20 A1JG0 N21 C22 SING N N 21 A1JG0 C22 O23 DOUB N N 22 A1JG0 C22 C24 SING N N 23 A1JG0 C24 N25 SING N N 24 A1JG0 N25 C26 SING N N 25 A1JG0 C26 O27 DOUB N N 26 A1JG0 C26 C28 SING N N 27 A1JG0 C28 C29 DOUB Y N 28 A1JG0 C29 C30 SING Y N 29 A1JG0 C30 C31 DOUB Y N 30 A1JG0 C31 C32 SING Y N 31 A1JG0 C32 O33 SING N N 32 A1JG0 C32 C34 DOUB Y N 33 A1JG0 C34 O35 SING N N 34 A1JG0 C24 C36 SING N N 35 A1JG0 C36 C37 SING N N 36 A1JG0 C36 O38 SING N N 37 A1JG0 O38 C39 SING N N 38 A1JG0 C39 O40 DOUB N N 39 A1JG0 C39 C5 SING N N 40 A1JG0 C20 C15 SING Y N 41 A1JG0 C34 C28 SING Y N 42 A1JG0 C4 H4B SING N N 43 A1JG0 C4 H4C SING N N 44 A1JG0 C4 H4A SING N N 45 A1JG0 C10 H10C SING N N 46 A1JG0 C10 H10A SING N N 47 A1JG0 C10 H10B SING N N 48 A1JG0 C13 H13 SING N N 49 A1JG0 C17 H17 SING N N 50 A1JG0 C20 H20 SING N N 51 A1JG0 C24 H24 SING N N 52 A1JG0 C1 H1B SING N N 53 A1JG0 C1 H1A SING N N 54 A1JG0 C1 H1C SING N N 55 A1JG0 C2 H2A SING N N 56 A1JG0 C2 H2B SING N N 57 A1JG0 C9 H9 SING N N 58 A1JG0 C11 H11 SING N N 59 A1JG0 O12 H12 SING N N 60 A1JG0 C14 H14B SING N N 61 A1JG0 C14 H14A SING N N 62 A1JG0 C16 H16 SING N N 63 A1JG0 C18 H18 SING N N 64 A1JG0 N21 H21 SING N N 65 A1JG0 N25 H25 SING N N 66 A1JG0 C29 H29 SING N N 67 A1JG0 C30 H30 SING N N 68 A1JG0 C31 H31 SING N N 69 A1JG0 O33 H33 SING N N 70 A1JG0 O35 H35 SING N N 71 A1JG0 C36 H36 SING N N 72 A1JG0 C37 H37B SING N N 73 A1JG0 C37 H37A SING N N 74 A1JG0 C37 H37C SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JG0 InChI InChI 1.06 "InChI=1S/C28H33N3O9/c1-5-14(2)24-28(38)39-16(4)21(31-25(35)18-9-6-10-20(32)23(18)34)26(36)30-19(12-17-8-7-11-29-13-17)22(33)15(3)27(37)40-24/h6-11,13,15-16,19,21-22,32-34H,5,12H2,1-4H3,(H,30,36)(H,31,35)/b24-14-" A1JG0 InChIKey InChI 1.06 IJTJSDNFFYBIKM-OYKKKHCWSA-N A1JG0 SMILES_CANONICAL CACTVS 3.385 "CCC(/C)=C1\OC(=O)[C@H](C)[C@H](O)[C@H](Cc2cccnc2)NC(=O)[C@@H](NC(=O)c3cccc(O)c3O)[C@@H](C)OC1=O" A1JG0 SMILES CACTVS 3.385 "CCC(C)=C1OC(=O)[CH](C)[CH](O)[CH](Cc2cccnc2)NC(=O)[CH](NC(=O)c3cccc(O)c3O)[CH](C)OC1=O" A1JG0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC/C(=C\1/C(=O)O[C@@H]([C@@H](C(=O)N[C@H]([C@H]([C@H](C(=O)O1)C)O)Cc2cccnc2)NC(=O)c3cccc(c3O)O)C)/C" A1JG0 SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=C1C(=O)OC(C(C(=O)NC(C(C(C(=O)O1)C)O)Cc2cccnc2)NC(=O)c3cccc(c3O)O)C)C" # _pdbx_chem_comp_identifier.comp_id A1JG0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(2~{Z},5~{R},6~{S},9~{S},10~{S},11~{R})-2-butan-2-ylidene-5,11-dimethyl-10-oxidanyl-3,7,12-tris(oxidanylidene)-9-(pyridin-3-ylmethyl)-1,4-dioxa-8-azacyclododec-6-yl]-2,3-bis(oxidanyl)benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JG0 "Create component" 2025-06-16 PDBE A1JG0 "Initial release" 2026-02-11 RCSB #