data_A1JG1 # _chem_comp.id A1JG1 _chem_comp.name "~{N}-[(2~{Z},5~{R},6~{S},9~{S},10~{S},11~{R})-2-butan-2-ylidene-5,11-dimethyl-10-oxidanyl-3,7,12-tris(oxidanylidene)-9-(pyridin-3-ylmethyl)-1,4-dioxa-8-azacyclododec-6-yl]-4-oxidanyl-pyridine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H32 N4 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-06-16 _chem_comp.pdbx_modified_date 2026-02-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 540.565 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JG1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RJI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JG1 C4 C1 C 0 1 N N N N N N -27.377 -11.649 87.161 -5.378 3.427 -0.286 C4 A1JG1 1 A1JG1 C5 C2 C 0 1 N N N N N N -25.652 -13.324 86.449 -4.260 1.230 -0.317 C5 A1JG1 2 A1JG1 C7 C3 C 0 1 N N N N N N -23.510 -13.542 85.449 -3.358 -0.894 0.031 C7 A1JG1 3 A1JG1 C10 C4 C 0 1 N N N N N N -21.273 -13.266 86.448 -4.434 -3.069 -0.467 C10 A1JG1 4 A1JG1 C13 C5 C 0 1 N N S N N N -22.057 -15.947 83.712 -0.664 -2.519 -0.079 C13 A1JG1 5 A1JG1 C15 C6 C 0 1 Y N N N N N -21.880 -17.521 81.697 1.732 -3.152 -0.212 C15 A1JG1 6 A1JG1 C17 C7 C 0 1 Y N N N N N -23.327 -18.452 80.029 3.807 -2.040 0.148 C17 A1JG1 7 A1JG1 C20 C8 C 0 1 Y N N N N N -21.502 -18.819 81.993 2.169 -3.473 -1.483 C20 A1JG1 8 A1JG1 C22 C9 C 0 1 N N N N N N -24.388 -16.681 83.793 0.140 -0.259 -0.081 C22 A1JG1 9 A1JG1 C24 C10 C 0 1 N N S N N N -25.789 -16.534 83.201 0.463 1.048 0.601 C24 A1JG1 10 A1JG1 C26 C11 C 0 1 N N N N N N -26.604 -17.970 81.395 2.897 1.112 0.692 C26 A1JG1 11 A1JG1 C28 C12 C 0 1 Y N N N N N -26.672 -19.374 80.886 4.198 1.612 0.208 C28 A1JG1 12 A1JG1 C1 C13 C 0 1 N N N N N N -25.168 -12.272 89.473 -7.424 0.943 0.596 C1 A1JG1 13 A1JG1 C2 C14 C 0 1 N N N N N N -25.075 -11.630 88.124 -6.692 1.213 -0.720 C2 A1JG1 14 A1JG1 C3 C15 C 0 1 N N N N N N -26.005 -12.264 87.193 -5.395 1.928 -0.436 C3 A1JG1 15 A1JG1 O6 O1 O 0 1 N N N N N N -24.344 -13.808 86.521 -4.254 -0.097 -0.562 O6 A1JG1 16 A1JG1 O8 O2 O 0 1 N N N N N N -23.834 -12.841 84.528 -2.745 -0.503 0.994 O8 A1JG1 17 A1JG1 C9 C16 C 0 1 N N R N N N -22.163 -14.211 85.640 -3.122 -2.280 -0.512 C9 A1JG1 18 A1JG1 C11 C17 C 0 1 N N S N N N -21.501 -14.640 84.317 -2.059 -3.015 0.299 C11 A1JG1 19 A1JG1 O12 O3 O 0 1 N N N N N N -21.530 -13.571 83.379 -2.285 -2.844 1.697 O12 A1JG1 20 A1JG1 C14 C18 C 0 1 N N N N N N -21.287 -16.348 82.442 0.371 -3.595 0.261 C14 A1JG1 21 A1JG1 C16 C19 C 0 1 Y N N N N N -22.813 -17.352 80.690 2.562 -2.422 0.624 C16 A1JG1 22 A1JG1 C18 C20 C 0 1 Y N N N N N -22.883 -19.701 80.403 4.176 -2.398 -1.135 C18 A1JG1 23 A1JG1 N19 N1 N 0 1 Y N N N N N -21.982 -19.900 81.371 3.360 -3.093 -1.903 N19 A1JG1 24 A1JG1 N21 N2 N 0 1 N N N N N N -23.474 -15.782 83.407 -0.366 -1.281 0.688 N21 A1JG1 25 A1JG1 O23 O4 O 0 1 N N N N N N -24.124 -17.621 84.534 0.323 -0.398 -1.271 O23 A1JG1 26 A1JG1 N25 N3 N 0 1 N N N N N N -26.115 -17.825 82.630 1.755 1.543 0.121 N25 A1JG1 27 A1JG1 O27 O5 O 0 1 N N N N N N -26.952 -17.016 80.703 2.854 0.311 1.606 O27 A1JG1 28 A1JG1 C29 C21 C 0 1 Y N N N N N -27.065 -19.586 79.566 4.262 2.530 -0.839 C29 A1JG1 29 A1JG1 N30 N4 N 0 1 Y N N N N N -26.948 -20.759 78.937 5.423 2.977 -1.270 N30 A1JG1 30 A1JG1 C31 C22 C 0 1 Y N N N N N -26.436 -21.781 79.633 6.567 2.582 -0.740 C31 A1JG1 31 A1JG1 C32 C23 C 0 1 Y N N N N N -26.022 -21.698 80.946 6.596 1.675 0.299 C32 A1JG1 32 A1JG1 C33 C24 C 0 1 Y N N N N N -26.153 -20.477 81.587 5.398 1.174 0.799 C33 A1JG1 33 A1JG1 O34 O6 O 0 1 N N N N N N -25.822 -20.419 82.901 5.387 0.282 1.819 O34 A1JG1 34 A1JG1 C35 C25 C 0 1 N N R N N N -26.797 -16.080 84.263 -0.631 2.069 0.273 C35 A1JG1 35 A1JG1 C36 C26 C 0 1 N N N N N N -27.414 -17.188 85.087 -0.145 2.990 -0.848 C36 A1JG1 36 A1JG1 O37 O7 O 0 1 N N N N N N -26.019 -15.242 85.169 -1.824 1.364 -0.154 O37 A1JG1 37 A1JG1 C38 C27 C 0 1 N N N N N N -26.580 -14.096 85.582 -3.019 1.950 0.029 C38 A1JG1 38 A1JG1 O39 O8 O 0 1 N N N N N N -27.701 -13.757 85.297 -3.090 3.073 0.493 O39 A1JG1 39 A1JG1 H4B H1 H 0 1 N N N N N N -28.004 -12.188 86.436 -6.368 3.826 -0.509 H4B A1JG1 40 A1JG1 H4C H2 H 0 1 N N N N N N -27.832 -11.715 88.160 -5.104 3.687 0.736 H4C A1JG1 41 A1JG1 H4A H3 H 0 1 N N N N N N -27.298 -10.593 86.863 -4.650 3.853 -0.977 H4A A1JG1 42 A1JG1 H10C H4 H 0 0 N N N N N N -20.287 -13.730 86.600 -5.184 -2.561 -1.074 H10C A1JG1 43 A1JG1 H10A H5 H 0 0 N N N N N N -21.152 -12.319 85.901 -4.268 -4.072 -0.859 H10A A1JG1 44 A1JG1 H10B H6 H 0 0 N N N N N N -21.740 -13.068 87.424 -4.783 -3.135 0.563 H10B A1JG1 45 A1JG1 H13 H7 H 0 1 N N N N N N -21.936 -16.748 84.456 -0.630 -2.312 -1.150 H13 A1JG1 46 A1JG1 H17 H8 H 0 1 N N N N N N -24.056 -18.335 79.241 4.480 -1.471 0.772 H17 A1JG1 47 A1JG1 H20 H9 H 0 1 N N N N N N -20.773 -18.968 82.776 1.528 -4.042 -2.141 H20 A1JG1 48 A1JG1 H24 H10 H 0 1 N N N N N N -25.755 -15.776 82.405 0.507 0.895 1.678 H24 A1JG1 49 A1JG1 H1B H11 H 0 1 N N N N N N -24.462 -11.784 90.161 -6.800 0.322 1.238 H1B A1JG1 50 A1JG1 H1A H12 H 0 1 N N N N N N -26.192 -12.164 89.860 -7.632 1.889 1.096 H1A A1JG1 51 A1JG1 H1C H13 H 0 1 N N N N N N -24.918 -13.340 89.389 -8.362 0.427 0.390 H1C A1JG1 52 A1JG1 H2A H14 H 0 1 N N N N N N -25.323 -10.562 88.213 -6.483 0.268 -1.221 H2A A1JG1 53 A1JG1 H2B H15 H 0 1 N N N N N N -24.049 -11.738 87.741 -7.315 1.835 -1.362 H2B A1JG1 54 A1JG1 H9 H16 H 0 1 N N N N N N -22.320 -15.118 86.242 -2.792 -2.202 -1.552 H9 A1JG1 55 A1JG1 H11 H17 H 0 1 N N N N N N -20.446 -14.841 84.556 -2.121 -4.087 0.067 H11 A1JG1 56 A1JG1 H12 H18 H 0 1 N N N N N N -22.310 -13.047 83.519 -3.141 -3.177 2.001 H12 A1JG1 57 A1JG1 H14B H19 H 0 0 N N N N N N -21.269 -15.483 81.763 0.394 -3.749 1.340 H14B A1JG1 58 A1JG1 H14A H20 H 0 0 N N N N N N -20.258 -16.609 82.731 0.101 -4.529 -0.233 H14A A1JG1 59 A1JG1 H16 H21 H 0 1 N N N N N N -23.141 -16.359 80.420 2.247 -2.157 1.622 H16 A1JG1 60 A1JG1 H18 H22 H 0 1 N N N N N N -23.282 -20.563 79.889 5.144 -2.104 -1.513 H18 A1JG1 61 A1JG1 H21 H23 H 0 1 N N N N N N -23.771 -14.975 82.896 -0.506 -1.197 1.646 H21 A1JG1 62 A1JG1 H25 H24 H 0 1 N N N N N N -25.968 -18.644 83.185 1.789 2.182 -0.609 H25 A1JG1 63 A1JG1 H29 H25 H 0 1 N N N N N N -27.488 -18.755 79.021 3.350 2.879 -1.301 H29 A1JG1 64 A1JG1 H31 H26 H 0 1 N N N N N N -26.341 -22.734 79.133 7.495 2.975 -1.127 H31 A1JG1 65 A1JG1 H32 H27 H 0 1 N N N N N N -25.610 -22.556 81.457 7.539 1.361 0.723 H32 A1JG1 66 A1JG1 H34 H28 H 0 1 N N N N N N -25.954 -19.535 83.223 5.349 0.688 2.696 H34 A1JG1 67 A1JG1 H35 H29 H 0 1 N N N N N N -27.592 -15.490 83.783 -0.851 2.661 1.161 H35 A1JG1 68 A1JG1 H36B H30 H 0 0 N N N N N N -28.118 -16.757 85.814 0.077 2.397 -1.735 H36B A1JG1 69 A1JG1 H36A H31 H 0 0 N N N N N N -27.951 -17.882 84.424 -0.922 3.718 -1.083 H36A A1JG1 70 A1JG1 H36C H32 H 0 0 N N N N N N -26.621 -17.732 85.622 0.756 3.512 -0.525 H36C A1JG1 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JG1 C1 C2 SING N N 1 A1JG1 C2 C3 SING N N 2 A1JG1 C3 C4 SING N N 3 A1JG1 C3 C5 DOUB N Z 4 A1JG1 C5 O6 SING N N 5 A1JG1 O6 C7 SING N N 6 A1JG1 C7 O8 DOUB N N 7 A1JG1 C7 C9 SING N N 8 A1JG1 C9 C10 SING N N 9 A1JG1 C9 C11 SING N N 10 A1JG1 C11 O12 SING N N 11 A1JG1 C11 C13 SING N N 12 A1JG1 C13 C14 SING N N 13 A1JG1 C14 C15 SING N N 14 A1JG1 C15 C16 DOUB Y N 15 A1JG1 C16 C17 SING Y N 16 A1JG1 C17 C18 DOUB Y N 17 A1JG1 C18 N19 SING Y N 18 A1JG1 N19 C20 DOUB Y N 19 A1JG1 C13 N21 SING N N 20 A1JG1 N21 C22 SING N N 21 A1JG1 C22 O23 DOUB N N 22 A1JG1 C22 C24 SING N N 23 A1JG1 C24 N25 SING N N 24 A1JG1 N25 C26 SING N N 25 A1JG1 C26 O27 DOUB N N 26 A1JG1 C26 C28 SING N N 27 A1JG1 C28 C29 DOUB Y N 28 A1JG1 C29 N30 SING Y N 29 A1JG1 N30 C31 DOUB Y N 30 A1JG1 C31 C32 SING Y N 31 A1JG1 C32 C33 DOUB Y N 32 A1JG1 C33 O34 SING N N 33 A1JG1 C24 C35 SING N N 34 A1JG1 C35 C36 SING N N 35 A1JG1 C35 O37 SING N N 36 A1JG1 O37 C38 SING N N 37 A1JG1 C38 O39 DOUB N N 38 A1JG1 C38 C5 SING N N 39 A1JG1 C20 C15 SING Y N 40 A1JG1 C33 C28 SING Y N 41 A1JG1 C4 H4B SING N N 42 A1JG1 C4 H4C SING N N 43 A1JG1 C4 H4A SING N N 44 A1JG1 C10 H10C SING N N 45 A1JG1 C10 H10A SING N N 46 A1JG1 C10 H10B SING N N 47 A1JG1 C13 H13 SING N N 48 A1JG1 C17 H17 SING N N 49 A1JG1 C20 H20 SING N N 50 A1JG1 C24 H24 SING N N 51 A1JG1 C1 H1B SING N N 52 A1JG1 C1 H1A SING N N 53 A1JG1 C1 H1C SING N N 54 A1JG1 C2 H2A SING N N 55 A1JG1 C2 H2B SING N N 56 A1JG1 C9 H9 SING N N 57 A1JG1 C11 H11 SING N N 58 A1JG1 O12 H12 SING N N 59 A1JG1 C14 H14B SING N N 60 A1JG1 C14 H14A SING N N 61 A1JG1 C16 H16 SING N N 62 A1JG1 C18 H18 SING N N 63 A1JG1 N21 H21 SING N N 64 A1JG1 N25 H25 SING N N 65 A1JG1 C29 H29 SING N N 66 A1JG1 C31 H31 SING N N 67 A1JG1 C32 H32 SING N N 68 A1JG1 O34 H34 SING N N 69 A1JG1 C35 H35 SING N N 70 A1JG1 C36 H36B SING N N 71 A1JG1 C36 H36A SING N N 72 A1JG1 C36 H36C SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JG1 InChI InChI 1.06 "InChI=1S/C27H32N4O8/c1-5-14(2)23-27(37)38-16(4)21(31-24(34)18-13-29-10-8-20(18)32)25(35)30-19(11-17-7-6-9-28-12-17)22(33)15(3)26(36)39-23/h6-10,12-13,15-16,19,21-22,33H,5,11H2,1-4H3,(H,29,32)(H,30,35)(H,31,34)/b23-14-" A1JG1 InChIKey InChI 1.06 BQKPQROCFQELBJ-UCQKPKSFSA-N A1JG1 SMILES_CANONICAL CACTVS 3.385 "CCC(/C)=C1\OC(=O)[C@H](C)[C@H](O)[C@H](Cc2cccnc2)NC(=O)[C@@H](NC(=O)c3cnccc3O)[C@@H](C)OC1=O" A1JG1 SMILES CACTVS 3.385 "CCC(C)=C1OC(=O)[CH](C)[CH](O)[CH](Cc2cccnc2)NC(=O)[CH](NC(=O)c3cnccc3O)[CH](C)OC1=O" A1JG1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC/C(=C\1/C(=O)O[C@@H]([C@@H](C(=O)N[C@H]([C@H]([C@H](C(=O)O1)C)O)Cc2cccnc2)NC(=O)c3cnccc3O)C)/C" A1JG1 SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=C1C(=O)OC(C(C(=O)NC(C(C(C(=O)O1)C)O)Cc2cccnc2)NC(=O)c3cnccc3O)C)C" # _pdbx_chem_comp_identifier.comp_id A1JG1 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(2~{Z},5~{R},6~{S},9~{S},10~{S},11~{R})-2-butan-2-ylidene-5,11-dimethyl-10-oxidanyl-3,7,12-tris(oxidanylidene)-9-(pyridin-3-ylmethyl)-1,4-dioxa-8-azacyclododec-6-yl]-4-oxidanyl-pyridine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JG1 "Create component" 2025-06-16 PDBE A1JG1 "Initial release" 2026-02-11 RCSB #