data_A1JG3 # _chem_comp.id A1JG3 _chem_comp.name "~{N}-[(2~{Z},5~{R},6~{S},9~{S},10~{S},11~{R})-2-butan-2-ylidene-5,11-dimethyl-10-oxidanyl-3,7,12-tris(oxidanylidene)-9-(pyridin-3-ylmethyl)-1,4-dioxa-8-azacyclododec-6-yl]-3-fluoranyl-2-oxidanyl-benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H32 F N3 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-06-16 _chem_comp.pdbx_modified_date 2026-02-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 557.567 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JG3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RJK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JG3 C4 C1 C 0 1 N N N N N N 39.908 6.568 48.857 -5.542 3.526 -0.261 C4 A1JG3 1 A1JG3 C5 C2 C 0 1 N N N N N N 39.616 6.827 46.370 -4.477 1.302 -0.290 C5 A1JG3 2 A1JG3 C7 C3 C 0 1 N N N N N N 38.783 8.339 44.649 -3.621 -0.840 0.062 C7 A1JG3 3 A1JG3 C10 C4 C 0 1 N N N N N N 39.978 10.335 43.808 -4.757 -2.992 -0.403 C10 A1JG3 4 A1JG3 C13 C5 C 0 1 N N S N N N 37.675 8.103 41.611 -0.970 -2.530 -0.076 C13 A1JG3 5 A1JG3 C15 C6 C 0 1 Y N N N N N 35.894 7.342 39.916 1.408 -3.223 -0.240 C15 A1JG3 6 A1JG3 C17 C7 C 0 1 Y N N N N N 34.077 5.777 39.848 3.515 -2.159 0.080 C17 A1JG3 7 A1JG3 C20 C8 C 0 1 Y N N N N N 36.418 6.678 38.821 1.818 -3.564 -1.515 C20 A1JG3 8 A1JG3 C22 C9 C 0 1 N N N N N N 37.581 5.802 42.480 -0.112 -0.291 -0.109 C22 A1JG3 9 A1JG3 C24 C10 C 0 1 N N S N N N 36.844 4.827 43.395 0.253 1.013 0.557 C24 A1JG3 10 A1JG3 C26 C11 C 0 1 N N N N N N 35.083 3.417 42.489 2.689 1.019 0.611 C26 A1JG3 11 A1JG3 C28 C12 C 0 1 Y N N N N N 34.644 2.609 41.316 3.995 1.483 0.104 C28 A1JG3 12 A1JG3 C1 C13 C 0 1 N N N N N N 42.249 8.415 47.285 -7.633 1.100 0.672 C1 A1JG3 13 A1JG3 C2 C14 C 0 1 N N N N N N 40.811 8.576 47.623 -6.914 1.341 -0.657 C2 A1JG3 14 A1JG3 C3 C15 C 0 1 N N N N N N 40.098 7.278 47.541 -5.597 2.026 -0.398 C3 A1JG3 15 A1JG3 O6 O1 O 0 1 N N N N N N 39.769 7.559 45.185 -4.507 -0.027 -0.525 O6 A1JG3 16 A1JG3 O8 O2 O 0 1 N N N N N N 37.702 8.456 45.157 -2.984 -0.457 1.012 O8 A1JG3 17 A1JG3 C9 C16 C 0 1 N N R N N N 39.266 9.044 43.396 -3.427 -2.236 -0.474 C9 A1JG3 18 A1JG3 C11 C17 C 0 1 N N S N N N 38.127 9.322 42.401 -2.370 -2.990 0.328 C11 A1JG3 19 A1JG3 O12 O3 O 0 1 N N N N N N 37.059 9.987 43.062 -2.570 -2.803 1.727 O12 A1JG3 20 A1JG3 C14 C18 C 0 1 N N N N N N 36.628 8.503 40.550 0.045 -3.629 0.258 C14 A1JG3 21 A1JG3 C16 C19 C 0 1 Y N N N N N 34.693 6.872 40.423 2.269 -2.507 0.577 C16 A1JG3 22 A1JG3 C18 C20 C 0 1 Y N N N N N 34.683 5.186 38.762 3.856 -2.535 -1.206 C18 A1JG3 23 A1JG3 N19 N1 N 0 1 Y N N N N N 35.841 5.621 38.243 3.011 -3.217 -1.955 N19 A1JG3 24 A1JG3 N21 N2 N 0 1 N N N N N N 37.135 7.065 42.485 -0.630 -1.294 0.677 N21 A1JG3 25 A1JG3 O23 O4 O 0 1 N N N N N N 38.445 5.392 41.699 0.050 -0.444 -1.301 O23 A1JG3 26 A1JG3 N25 N3 N 0 1 N N N N N N 36.361 3.801 42.489 1.549 1.473 0.054 N25 A1JG3 27 A1JG3 O27 O5 O 0 1 N N N N N N 34.295 3.739 43.378 2.641 0.227 1.532 O27 A1JG3 28 A1JG3 C29 C21 C 0 1 Y N N N N N 33.270 2.410 41.171 4.054 2.393 -0.954 C29 A1JG3 29 A1JG3 C30 C22 C 0 1 Y N N N N N 32.764 1.828 40.019 5.276 2.824 -1.424 C30 A1JG3 30 A1JG3 C31 C23 C 0 1 Y N N N N N 33.610 1.431 38.994 6.448 2.358 -0.852 C31 A1JG3 31 A1JG3 C32 C24 C 0 1 Y N N N N N 34.960 1.622 39.148 6.405 1.457 0.195 C32 A1JG3 32 A1JG3 F33 F1 F 0 1 N N N N N N 35.799 1.171 38.196 7.553 1.007 0.747 F33 A1JG3 33 A1JG3 C34 C25 C 0 1 Y N N N N N 35.518 2.206 40.271 5.182 1.017 0.685 C34 A1JG3 34 A1JG3 O35 O6 O 0 1 N N N N N N 36.876 2.408 40.337 5.136 0.133 1.713 O35 A1JG3 35 A1JG3 C36 C26 C 0 1 N N R N N N 37.755 4.261 44.491 -0.821 2.058 0.238 C36 A1JG3 36 A1JG3 C37 C27 C 0 1 N N N N N N 38.638 3.113 44.059 -0.330 2.958 -0.899 C37 A1JG3 37 A1JG3 O38 O7 O 0 1 N N N N N N 38.632 5.368 44.857 -2.036 1.378 -0.165 O38 A1JG3 38 A1JG3 C39 C28 C 0 1 N N N N N N 38.791 5.622 46.178 -3.214 1.995 0.031 C39 A1JG3 39 A1JG3 O40 O8 O 0 1 N N N N N N 38.272 4.972 47.055 -3.251 3.122 0.486 O40 A1JG3 40 A1JG3 H4C H1 H 0 1 N N N N N N 39.372 5.622 48.690 -6.524 3.947 -0.473 H4C A1JG3 41 A1JG3 H4B H2 H 0 1 N N N N N N 40.890 6.359 49.306 -5.245 3.787 0.755 H4B A1JG3 42 A1JG3 H4A H3 H 0 1 N N N N N N 39.323 7.205 49.536 -4.814 3.928 -0.966 H4A A1JG3 43 A1JG3 H10C H4 H 0 0 N N N N N N 40.335 10.860 42.910 -5.504 -2.471 -1.002 H10C A1JG3 44 A1JG3 H10B H5 H 0 0 N N N N N N 39.277 10.982 44.356 -4.621 -4.003 -0.789 H10B A1JG3 45 A1JG3 H10A H6 H 0 0 N N N N N N 40.834 10.091 44.455 -5.092 -3.042 0.633 H10A A1JG3 46 A1JG3 H13 H7 H 0 1 N N N N N N 38.550 7.699 41.081 -0.947 -2.333 -1.149 H13 A1JG3 47 A1JG3 H17 H8 H 0 1 N N N N N N 33.146 5.395 40.240 4.211 -1.601 0.688 H17 A1JG3 48 A1JG3 H20 H9 H 0 1 N N N N N N 37.350 7.036 38.409 1.154 -4.122 -2.158 H20 A1JG3 49 A1JG3 H24 H10 H 0 1 N N N N N N 35.996 5.346 43.866 0.310 0.867 1.635 H24 A1JG3 50 A1JG3 H1B H11 H 0 1 N N N N N N 42.754 9.390 47.353 -7.015 0.468 1.310 H1B A1JG3 51 A1JG3 H1A H12 H 0 1 N N N N N N 42.715 7.711 47.990 -7.811 2.054 1.168 H1A A1JG3 52 A1JG3 H1C H13 H 0 1 N N N N N N 42.343 8.024 46.261 -8.586 0.604 0.485 H1C A1JG3 53 A1JG3 H2A H14 H 0 1 N N N N N N 40.724 8.970 48.646 -6.737 0.387 -1.153 H2A A1JG3 54 A1JG3 H2B H15 H 0 1 N N N N N N 40.352 9.284 46.917 -7.533 1.972 -1.295 H2B A1JG3 55 A1JG3 H9 H16 H 0 1 N N N N N N 40.000 8.394 42.898 -3.112 -2.174 -1.519 H9 A1JG3 56 A1JG3 H11 H17 H 0 1 N N N N N N 38.539 10.025 41.663 -2.461 -4.062 0.105 H11 A1JG3 57 A1JG3 H12 H18 H 0 1 N N N N N N 36.980 9.656 43.949 -3.429 -3.112 2.046 H12 A1JG3 58 A1JG3 H14A H19 H 0 0 N N N N N N 35.885 9.156 41.031 0.080 -3.775 1.337 H14A A1JG3 59 A1JG3 H14B H20 H 0 0 N N N N N N 37.143 9.059 39.753 -0.256 -4.560 -0.225 H14B A1JG3 60 A1JG3 H16 H21 H 0 1 N N N N N N 34.237 7.363 41.270 1.975 -2.226 1.578 H16 A1JG3 61 A1JG3 H18 H22 H 0 1 N N N N N N 34.204 4.332 38.307 4.825 -2.268 -1.601 H18 A1JG3 62 A1JG3 H21 H23 H 0 1 N N N N N N 36.398 7.308 43.116 -0.753 -1.200 1.636 H21 A1JG3 63 A1JG3 H25 H24 H 0 1 N N N N N N 37.000 3.372 41.851 1.587 2.105 -0.681 H25 A1JG3 64 A1JG3 H29 H25 H 0 1 N N N N N N 32.597 2.711 41.961 3.142 2.759 -1.404 H29 A1JG3 65 A1JG3 H30 H26 H 0 1 N N N N N N 31.699 1.682 39.918 5.319 3.527 -2.242 H30 A1JG3 66 A1JG3 H31 H27 H 0 1 N N N N N N 33.215 0.982 38.095 7.401 2.701 -1.227 H31 A1JG3 67 A1JG3 H35 H28 H 0 1 N N N N N N 37.096 2.815 41.167 5.113 0.546 2.587 H35 A1JG3 68 A1JG3 H36 H29 H 0 1 N N N N N N 37.143 3.955 45.352 -1.012 2.662 1.124 H36 A1JG3 69 A1JG3 H37B H30 H 0 0 N N N N N N 39.249 2.780 44.910 -0.135 2.352 -1.784 H37B A1JG3 70 A1JG3 H37A H31 H 0 0 N N N N N N 38.011 2.280 43.709 -1.092 3.703 -1.128 H37A A1JG3 71 A1JG3 H37C H32 H 0 0 N N N N N N 39.296 3.444 43.242 0.589 3.460 -0.593 H37C A1JG3 72 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JG3 C1 C2 SING N N 1 A1JG3 C2 C3 SING N N 2 A1JG3 C3 C4 SING N N 3 A1JG3 C3 C5 DOUB N Z 4 A1JG3 C5 O6 SING N N 5 A1JG3 O6 C7 SING N N 6 A1JG3 C7 O8 DOUB N N 7 A1JG3 C7 C9 SING N N 8 A1JG3 C9 C10 SING N N 9 A1JG3 C9 C11 SING N N 10 A1JG3 C11 O12 SING N N 11 A1JG3 C11 C13 SING N N 12 A1JG3 C13 C14 SING N N 13 A1JG3 C14 C15 SING N N 14 A1JG3 C15 C16 DOUB Y N 15 A1JG3 C16 C17 SING Y N 16 A1JG3 C17 C18 DOUB Y N 17 A1JG3 C18 N19 SING Y N 18 A1JG3 N19 C20 DOUB Y N 19 A1JG3 C13 N21 SING N N 20 A1JG3 N21 C22 SING N N 21 A1JG3 C22 O23 DOUB N N 22 A1JG3 C22 C24 SING N N 23 A1JG3 C24 N25 SING N N 24 A1JG3 N25 C26 SING N N 25 A1JG3 C26 O27 DOUB N N 26 A1JG3 C26 C28 SING N N 27 A1JG3 C28 C29 DOUB Y N 28 A1JG3 C29 C30 SING Y N 29 A1JG3 C30 C31 DOUB Y N 30 A1JG3 C31 C32 SING Y N 31 A1JG3 C32 F33 SING N N 32 A1JG3 C32 C34 DOUB Y N 33 A1JG3 C34 O35 SING N N 34 A1JG3 C24 C36 SING N N 35 A1JG3 C36 C37 SING N N 36 A1JG3 C36 O38 SING N N 37 A1JG3 O38 C39 SING N N 38 A1JG3 C39 O40 DOUB N N 39 A1JG3 C39 C5 SING N N 40 A1JG3 C20 C15 SING Y N 41 A1JG3 C34 C28 SING Y N 42 A1JG3 C4 H4C SING N N 43 A1JG3 C4 H4B SING N N 44 A1JG3 C4 H4A SING N N 45 A1JG3 C10 H10C SING N N 46 A1JG3 C10 H10B SING N N 47 A1JG3 C10 H10A SING N N 48 A1JG3 C13 H13 SING N N 49 A1JG3 C17 H17 SING N N 50 A1JG3 C20 H20 SING N N 51 A1JG3 C24 H24 SING N N 52 A1JG3 C1 H1B SING N N 53 A1JG3 C1 H1A SING N N 54 A1JG3 C1 H1C SING N N 55 A1JG3 C2 H2A SING N N 56 A1JG3 C2 H2B SING N N 57 A1JG3 C9 H9 SING N N 58 A1JG3 C11 H11 SING N N 59 A1JG3 O12 H12 SING N N 60 A1JG3 C14 H14A SING N N 61 A1JG3 C14 H14B SING N N 62 A1JG3 C16 H16 SING N N 63 A1JG3 C18 H18 SING N N 64 A1JG3 N21 H21 SING N N 65 A1JG3 N25 H25 SING N N 66 A1JG3 C29 H29 SING N N 67 A1JG3 C30 H30 SING N N 68 A1JG3 C31 H31 SING N N 69 A1JG3 O35 H35 SING N N 70 A1JG3 C36 H36 SING N N 71 A1JG3 C37 H37B SING N N 72 A1JG3 C37 H37A SING N N 73 A1JG3 C37 H37C SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JG3 InChI InChI 1.06 "InChI=1S/C28H32FN3O8/c1-5-14(2)24-28(38)39-16(4)21(32-25(35)18-9-6-10-19(29)23(18)34)26(36)31-20(12-17-8-7-11-30-13-17)22(33)15(3)27(37)40-24/h6-11,13,15-16,20-22,33-34H,5,12H2,1-4H3,(H,31,36)(H,32,35)/b24-14-" A1JG3 InChIKey InChI 1.06 SFZXQGFRHSUSNF-OYKKKHCWSA-N A1JG3 SMILES_CANONICAL CACTVS 3.385 "CCC(/C)=C1\OC(=O)[C@H](C)[C@H](O)[C@H](Cc2cccnc2)NC(=O)[C@@H](NC(=O)c3cccc(F)c3O)[C@@H](C)OC1=O" A1JG3 SMILES CACTVS 3.385 "CCC(C)=C1OC(=O)[CH](C)[CH](O)[CH](Cc2cccnc2)NC(=O)[CH](NC(=O)c3cccc(F)c3O)[CH](C)OC1=O" A1JG3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC/C(=C\1/C(=O)O[C@@H]([C@@H](C(=O)N[C@H]([C@H]([C@H](C(=O)O1)C)O)Cc2cccnc2)NC(=O)c3cccc(c3O)F)C)/C" A1JG3 SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=C1C(=O)OC(C(C(=O)NC(C(C(C(=O)O1)C)O)Cc2cccnc2)NC(=O)c3cccc(c3O)F)C)C" # _pdbx_chem_comp_identifier.comp_id A1JG3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(2~{Z},5~{R},6~{S},9~{S},10~{S},11~{R})-2-butan-2-ylidene-5,11-dimethyl-10-oxidanyl-3,7,12-tris(oxidanylidene)-9-(pyridin-3-ylmethyl)-1,4-dioxa-8-azacyclododec-6-yl]-3-fluoranyl-2-oxidanyl-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JG3 "Create component" 2025-06-16 PDBE A1JG3 "Initial release" 2026-02-11 RCSB #