data_A1JG4 # _chem_comp.id A1JG4 _chem_comp.name "~{N}'-cyclopentyl-~{N}-[2-[(1~{R},9~{R},10~{S})-10-oxidanyl-12-oxa-8-azatricyclo[7.3.1.0^{2,7}]trideca-2(7),3,5-trien-4-yl]ethyl]ethanediamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H27 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-06-17 _chem_comp.pdbx_modified_date 2025-06-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 373.446 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JG4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RLM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JG4 C2 C1 C 0 1 N N N N N N -2.733 -1.516 -24.098 4.485 -0.592 -0.116 C2 A1JG4 1 A1JG4 C4 C2 C 0 1 N N N N N N -2.104 -3.841 -23.713 6.862 -0.086 0.054 C4 A1JG4 2 A1JG4 C5 C3 C 0 1 N N N N N N -2.003 -5.128 -24.545 7.217 0.768 -1.181 C5 A1JG4 3 A1JG4 C6 C4 C 0 1 N N N N N N -0.708 -5.835 -24.059 7.874 2.039 -0.588 C6 A1JG4 4 A1JG4 C7 C5 C 0 1 N N N N N N 0.226 -4.683 -23.665 8.697 1.477 0.598 C7 A1JG4 5 A1JG4 C8 C6 C 0 1 N N N N N N -0.721 -3.643 -23.068 7.803 0.365 1.185 C8 A1JG4 6 A1JG4 C12 C7 C 0 1 N N N N N N -3.692 1.879 -25.429 0.683 -0.853 0.095 C12 A1JG4 7 A1JG4 C15 C8 C 0 1 Y N N N N N -6.904 3.543 -24.914 -2.421 -0.651 -0.985 C15 A1JG4 8 A1JG4 C16 C9 C 0 1 Y N N N N N -7.905 3.898 -24.018 -3.739 -0.426 -0.629 C16 A1JG4 9 A1JG4 C17 C10 C 0 1 N N R N N N -8.675 5.200 -24.215 -4.541 0.599 -1.393 C17 A1JG4 10 A1JG4 C18 C11 C 0 1 N N N N N N -10.102 4.975 -23.669 -6.033 0.258 -1.289 C18 A1JG4 11 A1JG4 C19 C12 C 0 1 N N R N N N -9.979 4.561 -22.196 -6.397 0.162 0.198 C19 A1JG4 12 A1JG4 C21 C13 C 0 1 Y N N N N N -8.207 3.002 -22.965 -4.298 -1.132 0.424 C21 A1JG4 13 A1JG4 C23 C14 C 0 1 Y N N N N N -6.494 1.514 -23.734 -2.213 -2.270 0.769 C23 A1JG4 14 A1JG4 C24 C15 C 0 1 N N S N N N -9.276 5.639 -21.362 -6.054 1.478 0.894 C24 A1JG4 15 A1JG4 O26 O1 O 0 1 N N N N N N -10.107 6.819 -21.307 -6.890 2.517 0.381 O26 A1JG4 16 A1JG4 C27 C16 C 0 1 N N N N N N -7.925 6.016 -21.997 -4.588 1.837 0.646 C27 A1JG4 17 A1JG4 O28 O2 O 0 1 N N N N N N -8.071 6.241 -23.393 -4.334 1.873 -0.761 O28 A1JG4 18 A1JG4 O1 O3 O 0 1 N N N N N N -2.736 -1.256 -22.893 4.755 -1.446 -0.935 O1 A1JG4 19 A1JG4 N3 N1 N 0 1 N N N N N N -2.465 -2.729 -24.612 5.467 0.144 0.440 N3 A1JG4 20 A1JG4 C9 C17 C 0 1 N N N N N N -3.104 -0.506 -25.149 3.061 -0.354 0.273 C9 A1JG4 21 A1JG4 O10 O4 O 0 1 N N N N N N -3.161 -0.775 -26.320 2.791 0.499 1.093 O10 A1JG4 22 A1JG4 N11 N2 N 0 1 N N N N N N -3.400 0.683 -24.616 2.078 -1.087 -0.286 N11 A1JG4 23 A1JG4 C13 C18 C 0 1 N N N N N N -5.152 1.991 -25.846 -0.225 -1.810 -0.680 C13 A1JG4 24 A1JG4 C14 C19 C 0 1 Y N N N N N -6.170 2.379 -24.779 -1.660 -1.570 -0.288 C14 A1JG4 25 A1JG4 N20 N3 N 0 1 N N N N N N -9.269 3.262 -22.069 -5.635 -0.942 0.788 N20 A1JG4 26 A1JG4 C22 C20 C 0 1 Y N N N N N -7.497 1.821 -22.833 -3.528 -2.053 1.127 C22 A1JG4 27 A1JG4 H1 H1 H 0 1 N N N N N N -2.864 -3.965 -22.928 7.020 -1.142 -0.165 H1 A1JG4 28 A1JG4 H2 H2 H 0 1 N N N N N N -1.932 -4.889 -25.616 7.922 0.238 -1.822 H2 A1JG4 29 A1JG4 H3 H3 H 0 1 N N N N N N -2.880 -5.769 -24.370 6.316 1.029 -1.737 H3 A1JG4 30 A1JG4 H4 H4 H 0 1 N N N N N N -0.918 -6.481 -23.193 8.527 2.514 -1.320 H4 A1JG4 31 A1JG4 H5 H5 H 0 1 N N N N N N -0.266 -6.437 -24.867 7.116 2.738 -0.235 H5 A1JG4 32 A1JG4 H6 H6 H 0 1 N N N N N N 0.966 -5.014 -22.921 9.640 1.061 0.245 H6 A1JG4 33 A1JG4 H7 H7 H 0 1 N N N N N N 0.747 -4.280 -24.546 8.876 2.254 1.341 H7 A1JG4 34 A1JG4 H8 H8 H 0 1 N N N N N N -0.349 -2.631 -23.284 7.222 0.755 2.021 H8 A1JG4 35 A1JG4 H9 H9 H 0 1 N N N N N N -0.792 -3.783 -21.979 8.417 -0.473 1.516 H9 A1JG4 36 A1JG4 H10 H10 H 0 1 N N N N N N -3.073 1.842 -26.337 0.565 -1.027 1.165 H10 A1JG4 37 A1JG4 H11 H11 H 0 1 N N N N N N -3.429 2.771 -24.842 0.410 0.176 -0.138 H11 A1JG4 38 A1JG4 H12 H12 H 0 1 N N N N N N -6.692 4.199 -25.745 -1.987 -0.109 -1.812 H12 A1JG4 39 A1JG4 H13 H13 H 0 1 N N N N N N -8.706 5.481 -25.278 -4.230 0.622 -2.437 H13 A1JG4 40 A1JG4 H14 H14 H 0 1 N N N N N N -10.685 5.905 -23.749 -6.623 1.041 -1.764 H14 A1JG4 41 A1JG4 H15 H15 H 0 1 N N N N N N -10.601 4.179 -24.241 -6.227 -0.697 -1.778 H15 A1JG4 42 A1JG4 H16 H16 H 0 1 N N N N N N -10.997 4.439 -21.797 -7.464 -0.037 0.299 H16 A1JG4 43 A1JG4 H17 H17 H 0 1 N N N N N N -5.951 0.587 -23.626 -1.616 -2.986 1.314 H17 A1JG4 44 A1JG4 H18 H18 H 0 1 N N N N N N -9.099 5.250 -20.348 -6.222 1.375 1.966 H18 A1JG4 45 A1JG4 H19 H19 H 0 1 N N N N N N -9.673 7.488 -20.791 -6.727 3.384 0.777 H19 A1JG4 46 A1JG4 H20 H20 H 0 1 N N N N N N -7.209 5.196 -21.836 -4.376 2.816 1.078 H20 A1JG4 47 A1JG4 H21 H21 H 0 1 N N N N N N -7.546 6.932 -21.521 -3.947 1.089 1.112 H21 A1JG4 48 A1JG4 H22 H22 H 0 1 N N N N N N -2.510 -2.877 -25.600 5.251 0.826 1.095 H22 A1JG4 49 A1JG4 H23 H23 H 0 1 N N N N N N -3.425 0.766 -23.620 2.294 -1.769 -0.941 H23 A1JG4 50 A1JG4 H24 H24 H 0 1 N N N N N N -5.208 2.747 -26.643 -0.106 -1.637 -1.750 H24 A1JG4 51 A1JG4 H25 H25 H 0 1 N N N N N N -5.454 1.012 -26.247 0.048 -2.839 -0.447 H25 A1JG4 52 A1JG4 H26 H26 H 0 1 N N N N N N -9.947 2.538 -22.192 -6.056 -1.538 1.427 H26 A1JG4 53 A1JG4 H27 H27 H 0 1 N N N N N N -7.726 1.140 -22.027 -3.960 -2.600 1.952 H27 A1JG4 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JG4 O10 C9 DOUB N N 1 A1JG4 C13 C12 SING N N 2 A1JG4 C13 C14 SING N N 3 A1JG4 C12 N11 SING N N 4 A1JG4 C9 N11 SING N N 5 A1JG4 C9 C2 SING N N 6 A1JG4 C15 C14 DOUB Y N 7 A1JG4 C15 C16 SING Y N 8 A1JG4 C14 C23 SING Y N 9 A1JG4 N3 C2 SING N N 10 A1JG4 N3 C4 SING N N 11 A1JG4 C5 C6 SING N N 12 A1JG4 C5 C4 SING N N 13 A1JG4 C17 C16 SING N N 14 A1JG4 C17 C18 SING N N 15 A1JG4 C17 O28 SING N N 16 A1JG4 C2 O1 DOUB N N 17 A1JG4 C6 C7 SING N N 18 A1JG4 C16 C21 DOUB Y N 19 A1JG4 C23 C22 DOUB Y N 20 A1JG4 C4 C8 SING N N 21 A1JG4 C18 C19 SING N N 22 A1JG4 C7 C8 SING N N 23 A1JG4 O28 C27 SING N N 24 A1JG4 C21 C22 SING Y N 25 A1JG4 C21 N20 SING N N 26 A1JG4 C19 N20 SING N N 27 A1JG4 C19 C24 SING N N 28 A1JG4 C27 C24 SING N N 29 A1JG4 C24 O26 SING N N 30 A1JG4 C4 H1 SING N N 31 A1JG4 C5 H2 SING N N 32 A1JG4 C5 H3 SING N N 33 A1JG4 C6 H4 SING N N 34 A1JG4 C6 H5 SING N N 35 A1JG4 C7 H6 SING N N 36 A1JG4 C7 H7 SING N N 37 A1JG4 C8 H8 SING N N 38 A1JG4 C8 H9 SING N N 39 A1JG4 C12 H10 SING N N 40 A1JG4 C12 H11 SING N N 41 A1JG4 C15 H12 SING N N 42 A1JG4 C17 H13 SING N N 43 A1JG4 C18 H14 SING N N 44 A1JG4 C18 H15 SING N N 45 A1JG4 C19 H16 SING N N 46 A1JG4 C23 H17 SING N N 47 A1JG4 C24 H18 SING N N 48 A1JG4 O26 H19 SING N N 49 A1JG4 C27 H20 SING N N 50 A1JG4 C27 H21 SING N N 51 A1JG4 N3 H22 SING N N 52 A1JG4 N11 H23 SING N N 53 A1JG4 C13 H24 SING N N 54 A1JG4 C13 H25 SING N N 55 A1JG4 N20 H26 SING N N 56 A1JG4 C22 H27 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JG4 InChI InChI 1.06 "InChI=1S/C20H27N3O4/c24-17-11-27-18-10-16(17)23-15-6-5-12(9-14(15)18)7-8-21-19(25)20(26)22-13-3-1-2-4-13/h5-6,9,13,16-18,23-24H,1-4,7-8,10-11H2,(H,21,25)(H,22,26)/t16-,17-,18-/m1/s1" A1JG4 InChIKey InChI 1.06 TWJNDXFEOOUBGG-KZNAEPCWSA-N A1JG4 SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1CO[C@@H]2C[C@H]1Nc3ccc(CCNC(=O)C(=O)NC4CCCC4)cc23" A1JG4 SMILES CACTVS 3.385 "O[CH]1CO[CH]2C[CH]1Nc3ccc(CCNC(=O)C(=O)NC4CCCC4)cc23" A1JG4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1CCNC(=O)C(=O)NC3CCCC3)[C@H]4C[C@@H](N2)[C@@H](CO4)O" A1JG4 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1CCNC(=O)C(=O)NC3CCCC3)C4CC(N2)C(CO4)O" # _pdbx_chem_comp_identifier.comp_id A1JG4 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}'-cyclopentyl-~{N}-[2-[(1~{R},9~{R},10~{S})-10-oxidanyl-12-oxa-8-azatricyclo[7.3.1.0^{2,7}]trideca-2(7),3,5-trien-4-yl]ethyl]ethanediamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JG4 "Create component" 2025-06-17 PDBE A1JG4 "Initial release" 2025-07-02 RCSB #