data_A1JGB # _chem_comp.id A1JGB _chem_comp.name "~{N}-(2,3-dihydro-1~{H}-inden-2-yl)-2-pyridin-3-yl-~{N}-(thiophen-2-ylmethyl)ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H20 N2 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-06-11 _chem_comp.pdbx_modified_date 2025-07-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 348.461 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JGB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RI5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JGB C13 C1 C 0 1 Y N N N N N -22.262 -2.632 -30.654 1.941 -2.966 -0.103 C13 A1JGB 1 A1JGB C15 C2 C 0 1 Y N N N N N -22.405 -2.042 -32.912 0.855 -4.699 -1.138 C15 A1JGB 2 A1JGB C17 C3 C 0 1 N N N N N N -23.052 -4.817 -28.088 -1.523 -0.507 0.826 C17 A1JGB 3 A1JGB C20 C4 C 0 1 Y N N N N N -25.438 -4.464 -27.867 -3.170 1.262 0.594 C20 A1JGB 4 A1JGB C21 C5 C 0 1 Y N N N N N -25.156 -5.733 -27.319 -3.074 0.644 -0.645 C21 A1JGB 5 A1JGB C22 C6 C 0 1 Y N N N N N -26.113 -6.371 -26.477 -4.001 0.934 -1.633 C22 A1JGB 6 A1JGB C24 C7 C 0 1 Y N N N N N -27.617 -4.472 -26.766 -5.114 2.450 -0.154 C24 A1JGB 7 A1JGB O01 O1 O 0 1 N N N N N N -19.498 -5.039 -29.086 0.270 1.356 0.066 O01 A1JGB 8 A1JGB C02 C8 C 0 1 N N N N N N -20.476 -4.886 -28.388 0.739 0.364 0.582 C02 A1JGB 9 A1JGB C03 C9 C 0 1 N N N N N N -20.282 -4.628 -26.891 2.231 0.241 0.759 C03 A1JGB 10 A1JGB C04 C10 C 0 1 Y N N N N N -18.859 -4.860 -26.330 2.905 1.474 0.216 C04 A1JGB 11 A1JGB C05 C11 C 0 1 Y N N N N N -17.959 -3.811 -26.230 3.297 1.532 -1.108 C05 A1JGB 12 A1JGB N06 N1 N 0 1 Y N N N N N -16.706 -3.991 -25.762 3.887 2.608 -1.591 N06 A1JGB 13 A1JGB C07 C12 C 0 1 Y N N N N N -16.361 -5.161 -25.292 4.126 3.664 -0.839 C07 A1JGB 14 A1JGB C08 C13 C 0 1 Y N N N N N -17.170 -6.278 -25.380 3.762 3.679 0.495 C08 A1JGB 15 A1JGB C09 C14 C 0 1 Y N N N N N -18.464 -6.123 -25.895 3.135 2.568 1.036 C09 A1JGB 16 A1JGB N10 N2 N 0 1 N N N N N N -21.854 -4.974 -28.937 -0.073 -0.628 0.998 N10 A1JGB 17 A1JGB C11 C15 C 0 1 N N N N N N -22.006 -5.247 -30.367 0.494 -1.826 1.622 C11 A1JGB 18 A1JGB C12 C16 C 0 1 Y N N N N N -22.150 -3.932 -31.142 0.788 -2.853 0.560 C12 A1JGB 19 A1JGB C14 C17 C 0 1 Y N N N N N -22.378 -1.615 -31.596 1.978 -3.985 -1.039 C14 A1JGB 20 A1JGB S16 S1 S 0 1 Y N N N N N -22.261 -3.762 -32.855 -0.335 -4.088 0.004 S16 A1JGB 21 A1JGB C18 C18 C 0 1 N N N N N N -23.721 -6.166 -27.792 -1.883 -0.290 -0.659 C18 A1JGB 22 A1JGB C19 C19 C 0 1 N N N N N N -24.217 -4.035 -28.708 -2.049 0.782 1.492 C19 A1JGB 23 A1JGB C23 C20 C 0 1 Y N N N N N -27.340 -5.743 -26.207 -5.019 1.834 -1.388 C23 A1JGB 24 A1JGB C25 C21 C 0 1 Y N N N N N -26.675 -3.833 -27.593 -4.193 2.163 0.839 C25 A1JGB 25 A1JGB H131 H1 H 0 0 N N N N N N -22.259 -2.424 -29.594 2.780 -2.310 0.075 H131 A1JGB 26 A1JGB H151 H2 H 0 0 N N N N N N -22.497 -1.426 -33.794 0.702 -5.528 -1.812 H151 A1JGB 27 A1JGB H171 H3 H 0 0 N N N N N N -22.771 -4.342 -27.136 -2.033 -1.385 1.224 H171 A1JGB 28 A1JGB H221 H4 H 0 0 N N N N N N -25.895 -7.337 -26.047 -3.927 0.454 -2.597 H221 A1JGB 29 A1JGB H241 H5 H 0 0 N N N N N N -28.560 -3.989 -26.556 -5.910 3.154 0.039 H241 A1JGB 30 A1JGB H032 H6 H 0 0 N N N N N N -20.969 -5.292 -26.346 2.464 0.136 1.819 H032 A1JGB 31 A1JGB H031 H7 H 0 0 N N N N N N -20.552 -3.580 -26.695 2.589 -0.636 0.220 H031 A1JGB 32 A1JGB H051 H8 H 0 0 N N N N N N -18.269 -2.822 -26.535 3.118 0.685 -1.755 H051 A1JGB 33 A1JGB H071 H9 H 0 0 N N N N N N -15.398 -5.259 -24.812 4.611 4.527 -1.270 H071 A1JGB 34 A1JGB H081 H10 H 0 0 N N N N N N -16.814 -7.246 -25.060 3.961 4.547 1.106 H081 A1JGB 35 A1JGB H091 H11 H 0 0 N N N N N N -19.140 -6.964 -25.953 2.836 2.553 2.074 H091 A1JGB 36 A1JGB H112 H12 H 0 0 N N N N N N -22.903 -5.863 -30.526 1.416 -1.564 2.140 H112 A1JGB 37 A1JGB H111 H13 H 0 0 N N N N N N -21.120 -5.788 -30.730 -0.220 -2.236 2.336 H111 A1JGB 38 A1JGB H141 H14 H 0 0 N N N N N N -22.442 -0.572 -31.321 2.848 -4.183 -1.648 H141 A1JGB 39 A1JGB H182 H15 H 0 0 N N N N N N -23.771 -6.792 -28.695 -1.048 0.169 -1.187 H182 A1JGB 40 A1JGB H181 H16 H 0 0 N N N N N N -23.187 -6.709 -26.998 -2.152 -1.238 -1.125 H181 A1JGB 41 A1JGB H191 H17 H 0 0 N N N N N N -24.048 -2.951 -28.628 -2.431 0.566 2.490 H191 A1JGB 42 A1JGB H192 H18 H 0 0 N N N N N N -24.354 -4.308 -29.765 -1.258 1.530 1.542 H192 A1JGB 43 A1JGB H231 H19 H 0 0 N N N N N N -28.070 -6.228 -25.575 -5.738 2.059 -2.161 H231 A1JGB 44 A1JGB H251 H20 H 0 0 N N N N N N -26.895 -2.864 -28.017 -4.268 2.642 1.804 H251 A1JGB 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JGB C02 O01 DOUB N N 1 A1JGB C04 C03 SING N N 2 A1JGB C05 C04 DOUB Y N 3 A1JGB N06 C05 SING Y N 4 A1JGB C07 N06 DOUB Y N 5 A1JGB C08 C07 SING Y N 6 A1JGB C09 C08 DOUB Y N 7 A1JGB C03 C02 SING N N 8 A1JGB N10 C02 SING N N 9 A1JGB C12 C11 SING N N 10 A1JGB C13 C12 DOUB Y N 11 A1JGB C14 C13 SING Y N 12 A1JGB C15 C14 DOUB Y N 13 A1JGB S16 C15 SING Y N 14 A1JGB C11 N10 SING N N 15 A1JGB C17 N10 SING N N 16 A1JGB C18 C17 SING N N 17 A1JGB C19 C17 SING N N 18 A1JGB C20 C19 SING N N 19 A1JGB C21 C20 DOUB Y N 20 A1JGB C22 C21 SING Y N 21 A1JGB C23 C22 DOUB Y N 22 A1JGB C24 C23 SING Y N 23 A1JGB C25 C24 DOUB Y N 24 A1JGB C04 C09 SING Y N 25 A1JGB C12 S16 SING Y N 26 A1JGB C18 C21 SING N N 27 A1JGB C20 C25 SING Y N 28 A1JGB C13 H131 SING N N 29 A1JGB C15 H151 SING N N 30 A1JGB C17 H171 SING N N 31 A1JGB C22 H221 SING N N 32 A1JGB C24 H241 SING N N 33 A1JGB C03 H032 SING N N 34 A1JGB C03 H031 SING N N 35 A1JGB C05 H051 SING N N 36 A1JGB C07 H071 SING N N 37 A1JGB C08 H081 SING N N 38 A1JGB C09 H091 SING N N 39 A1JGB C11 H112 SING N N 40 A1JGB C11 H111 SING N N 41 A1JGB C14 H141 SING N N 42 A1JGB C18 H182 SING N N 43 A1JGB C18 H181 SING N N 44 A1JGB C19 H191 SING N N 45 A1JGB C19 H192 SING N N 46 A1JGB C23 H231 SING N N 47 A1JGB C25 H251 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JGB InChI InChI 1.06 "InChI=1S/C21H20N2OS/c24-21(11-16-5-3-9-22-14-16)23(15-20-8-4-10-25-20)19-12-17-6-1-2-7-18(17)13-19/h1-10,14,19H,11-13,15H2" A1JGB InChIKey InChI 1.06 FYMHTTNRRYHYMD-UHFFFAOYSA-N A1JGB SMILES_CANONICAL CACTVS 3.385 "O=C(Cc1cccnc1)N(Cc2sccc2)C3Cc4ccccc4C3" A1JGB SMILES CACTVS 3.385 "O=C(Cc1cccnc1)N(Cc2sccc2)C3Cc4ccccc4C3" A1JGB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CC(C2)N(Cc3cccs3)C(=O)Cc4cccnc4" A1JGB SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CC(C2)N(Cc3cccs3)C(=O)Cc4cccnc4" # _pdbx_chem_comp_identifier.comp_id A1JGB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-(2,3-dihydro-1~{H}-inden-2-yl)-2-pyridin-3-yl-~{N}-(thiophen-2-ylmethyl)ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JGB "Create component" 2025-06-11 PDBE A1JGB "Initial release" 2025-07-09 RCSB #