data_A1JGO # _chem_comp.id A1JGO _chem_comp.name "1-(benzimidazol-1-yl)-3-[(4~{S})-6-fluoranyl-3,4-dihydro-2~{H}-thiochromen-4-yl]urea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H15 F N4 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-06-12 _chem_comp.pdbx_modified_date 2025-07-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 342.391 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JGO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RJ0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JGO N1 N1 N 0 1 N N N N N N -20.077 -4.231 -26.923 1.550 -0.859 0.402 N1 A1JGO 1 A1JGO N3 N2 N 0 1 Y N N N N N -16.715 -3.737 -25.766 3.942 0.620 -1.736 N3 A1JGO 2 A1JGO C4 C1 C 0 1 Y N N N N N -22.130 -1.625 -31.681 -2.281 2.442 0.248 C4 A1JGO 3 A1JGO C5 C2 C 0 1 Y N N N N N -22.341 -1.968 -32.984 -3.640 2.654 0.410 C5 A1JGO 4 A1JGO C6 C3 C 0 1 Y N N N N N -22.472 -3.305 -33.294 -4.503 1.581 0.369 C6 A1JGO 5 A1JGO C7 C4 C 0 1 Y N N N N N -22.369 -4.269 -32.294 -4.022 0.287 0.165 C7 A1JGO 6 A1JGO C8 C5 C 0 1 N N N N N N -23.627 -6.406 -31.404 -4.232 -2.415 -0.520 C8 A1JGO 7 A1JGO C10 C6 C 0 1 Y N N N N N -18.176 -5.489 -26.022 3.968 -0.312 0.279 C10 A1JGO 8 A1JGO C13 C7 C 0 1 Y N N N N N -16.405 -7.422 -25.207 6.682 0.039 0.702 C13 A1JGO 9 A1JGO C15 C8 C 0 1 Y N N N N N -16.894 -5.111 -25.607 4.763 0.305 -0.701 C15 A1JGO 10 A1JGO F F1 F 0 1 N N N N N N -21.985 -0.316 -31.382 -1.424 3.485 0.294 F A1JGO 11 A1JGO C3 C9 C 0 1 Y N N N N N -22.056 -2.538 -30.661 -1.803 1.164 0.045 C3 A1JGO 12 A1JGO C2 C10 C 0 1 Y N N N N N -22.159 -3.895 -30.965 -2.668 0.074 -0.013 C2 A1JGO 13 A1JGO S S1 S 0 1 N N N N N N -22.586 -5.929 -32.811 -5.192 -1.034 0.164 S A1JGO 14 A1JGO C9 C11 C 0 1 N N N N N N -23.284 -5.907 -30.001 -2.882 -2.433 0.204 C9 A1JGO 15 A1JGO C1 C12 C 0 1 N N S N N N -22.044 -5.017 -29.949 -2.041 -1.264 -0.278 C1 A1JGO 16 A1JGO N N3 N 0 1 N N N N N N -21.616 -4.495 -28.650 -0.740 -1.313 0.394 N A1JGO 17 A1JGO C C13 C 0 1 N N N N N N -20.305 -4.505 -28.274 0.353 -0.814 -0.216 C A1JGO 18 A1JGO O O1 O 0 1 N N N N N N -19.392 -4.719 -29.091 0.259 -0.322 -1.324 O A1JGO 19 A1JGO N2 N4 N 0 1 Y N N N N N -18.794 -4.291 -26.370 2.685 -0.335 -0.230 N2 A1JGO 20 A1JGO C16 C14 C 0 1 Y N N N N N -17.876 -3.303 -26.202 2.727 0.246 -1.460 C16 A1JGO 21 A1JGO C14 C15 C 0 1 Y N N N N N -15.992 -6.089 -25.214 6.131 0.473 -0.471 C14 A1JGO 22 A1JGO C12 C16 C 0 1 Y N N N N N -17.695 -7.777 -25.595 5.897 -0.570 1.670 C12 A1JGO 23 A1JGO C11 C17 C 0 1 Y N N N N N -18.599 -6.812 -26.022 4.545 -0.747 1.464 C11 A1JGO 24 A1JGO H9 H1 H 0 1 N N N N N N -20.850 -3.986 -26.338 1.624 -1.251 1.286 H9 A1JGO 25 A1JGO H3 H2 H 0 1 N N N N N N -22.404 -1.212 -33.753 -4.020 3.652 0.568 H3 A1JGO 26 A1JGO H4 H3 H 0 1 N N N N N N -22.655 -3.606 -34.315 -5.564 1.743 0.496 H4 A1JGO 27 A1JGO H5 H4 H 0 1 N N N N N N -24.645 -6.054 -31.627 -4.758 -3.354 -0.346 H5 A1JGO 28 A1JGO H6 H5 H 0 1 N N N N N N -23.621 -7.505 -31.361 -4.081 -2.268 -1.589 H6 A1JGO 29 A1JGO H12 H6 H 0 1 N N N N N N -15.713 -8.191 -24.896 7.740 0.171 0.876 H12 A1JGO 30 A1JGO H2 H7 H 0 1 N N N N N N -21.920 -2.212 -29.640 -0.741 1.007 -0.077 H2 A1JGO 31 A1JGO H7 H8 H 0 1 N N N N N N -24.140 -5.332 -29.619 -3.043 -2.347 1.278 H7 A1JGO 32 A1JGO H8 H9 H 0 1 N N N N N N -23.111 -6.780 -29.355 -2.364 -3.368 -0.013 H8 A1JGO 33 A1JGO H H10 H 0 1 N N N N N N -21.219 -5.650 -30.307 -1.881 -1.368 -1.351 H A1JGO 34 A1JGO H1 H11 H 0 1 N N N N N N -22.301 -4.122 -28.024 -0.665 -1.705 1.278 H1 A1JGO 35 A1JGO H14 H12 H 0 1 N N N N N N -18.081 -2.263 -26.407 1.876 0.377 -2.111 H14 A1JGO 36 A1JGO H13 H13 H 0 1 N N N N N N -14.988 -5.823 -24.919 6.751 0.947 -1.217 H13 A1JGO 37 A1JGO H11 H14 H 0 1 N N N N N N -17.996 -8.814 -25.564 6.348 -0.909 2.591 H11 A1JGO 38 A1JGO H10 H15 H 0 1 N N N N N N -19.595 -7.081 -26.342 3.939 -1.222 2.221 H10 A1JGO 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JGO O C DOUB N N 1 A1JGO C N SING N N 2 A1JGO N C1 SING N N 3 A1JGO C1 C2 SING N N 4 A1JGO C2 C3 DOUB Y N 5 A1JGO C3 C4 SING Y N 6 A1JGO C5 C4 DOUB Y N 7 A1JGO C6 C5 SING Y N 8 A1JGO C4 F SING N N 9 A1JGO C2 C7 SING Y N 10 A1JGO C7 C6 DOUB Y N 11 A1JGO S C7 SING N N 12 A1JGO C8 S SING N N 13 A1JGO C9 C8 SING N N 14 A1JGO C1 C9 SING N N 15 A1JGO N1 C SING N N 16 A1JGO N2 N1 SING N N 17 A1JGO N2 C10 SING Y N 18 A1JGO C10 C11 DOUB Y N 19 A1JGO C11 C12 SING Y N 20 A1JGO C12 C13 DOUB Y N 21 A1JGO C13 C14 SING Y N 22 A1JGO C10 C15 SING Y N 23 A1JGO C14 C15 DOUB Y N 24 A1JGO C15 N3 SING Y N 25 A1JGO N3 C16 DOUB Y N 26 A1JGO C16 N2 SING Y N 27 A1JGO N1 H9 SING N N 28 A1JGO C5 H3 SING N N 29 A1JGO C6 H4 SING N N 30 A1JGO C8 H5 SING N N 31 A1JGO C8 H6 SING N N 32 A1JGO C13 H12 SING N N 33 A1JGO C3 H2 SING N N 34 A1JGO C9 H7 SING N N 35 A1JGO C9 H8 SING N N 36 A1JGO C1 H SING N N 37 A1JGO N H1 SING N N 38 A1JGO C16 H14 SING N N 39 A1JGO C14 H13 SING N N 40 A1JGO C12 H11 SING N N 41 A1JGO C11 H10 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JGO InChI InChI 1.06 "InChI=1S/C17H15FN4OS/c18-11-5-6-16-12(9-11)13(7-8-24-16)20-17(23)21-22-10-19-14-3-1-2-4-15(14)22/h1-6,9-10,13H,7-8H2,(H2,20,21,23)/t13-/m0/s1" A1JGO InChIKey InChI 1.06 UYXIALZFEONGAS-ZDUSSCGKSA-N A1JGO SMILES_CANONICAL CACTVS 3.385 "Fc1ccc2SCC[C@H](NC(=O)Nn3cnc4ccccc34)c2c1" A1JGO SMILES CACTVS 3.385 "Fc1ccc2SCC[CH](NC(=O)Nn3cnc4ccccc34)c2c1" A1JGO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)ncn2NC(=O)N[C@H]3CCSc4c3cc(cc4)F" A1JGO SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)ncn2NC(=O)NC3CCSc4c3cc(cc4)F" # _pdbx_chem_comp_identifier.comp_id A1JGO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-(benzimidazol-1-yl)-3-[(4~{S})-6-fluoranyl-3,4-dihydro-2~{H}-thiochromen-4-yl]urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JGO "Create component" 2025-06-12 PDBE A1JGO "Initial release" 2025-07-09 RCSB #