data_A1JGQ # _chem_comp.id A1JGQ _chem_comp.name "ethyl 3-[2-[(2-fluorophenyl)amino]-2-oxidanylidene-ethyl]-5-methyl-4-oxidanylidene-thieno[2,3-d]pyrimidine-6-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H16 F N3 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-06-12 _chem_comp.pdbx_modified_date 2025-12-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 389.401 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JGQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RHG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JGQ N3 N1 N 0 1 N N N N N N 124.242 114.472 119.484 0.929 2.249 -1.085 N3 A1JGQ 1 A1JGQ C4 C1 C 0 1 N N N N N N 123.288 115.347 119.845 -0.261 2.298 -0.565 C4 A1JGQ 2 A1JGQ C6 C2 C 0 1 N N N N N N 122.277 113.705 121.141 0.230 0.631 1.012 C6 A1JGQ 3 A1JGQ C8 C3 C 0 1 Y N N N N N 123.242 112.797 120.775 1.590 0.555 0.440 C8 A1JGQ 4 A1JGQ C10 C4 C 0 1 Y N N N N N 124.527 110.868 120.538 3.786 -0.080 0.074 C10 A1JGQ 5 A1JGQ C15 C5 C 0 1 N N N N N N 125.186 106.304 119.892 8.400 -0.917 -1.234 C15 A1JGQ 6 A1JGQ C17 C6 C 0 1 N N N N N N 121.279 115.891 121.086 -1.996 1.617 1.010 C17 A1JGQ 7 A1JGQ C21 C7 C 0 1 Y N N N N N 119.863 118.484 121.803 -5.023 -0.387 0.013 C21 A1JGQ 8 A1JGQ C22 C8 C 0 1 Y N N N N N 119.853 118.950 120.503 -6.395 -0.179 -0.084 C22 A1JGQ 9 A1JGQ C24 C9 C 0 1 Y N N N N N 118.663 119.296 119.894 -7.197 -1.139 -0.673 C24 A1JGQ 10 A1JGQ C26 C10 C 0 1 Y N N N N N 117.484 118.726 121.908 -5.273 -2.513 -1.068 C26 A1JGQ 11 A1JGQ C11 C11 C 0 1 N N N N N N 124.984 109.422 120.708 5.034 -0.819 0.276 C11 A1JGQ 12 A1JGQ C14 C12 C 0 1 N N N N N N 124.311 107.220 120.751 7.305 -1.338 -0.252 C14 A1JGQ 13 A1JGQ C16 C13 C 0 1 N N N N N N 122.533 110.575 122.050 2.585 -1.251 1.923 C16 A1JGQ 14 A1JGQ C18 C14 C 0 1 N N N N N N 121.840 116.917 122.071 -2.902 0.659 0.281 C18 A1JGQ 15 A1JGQ C2 C15 C 0 1 Y N N N N N 124.225 113.231 119.930 1.880 1.410 -0.629 C2 A1JGQ 16 A1JGQ C25 C16 C 0 1 Y N N N N N 117.476 119.184 120.600 -6.636 -2.304 -1.164 C25 A1JGQ 17 A1JGQ C27 C17 C 0 1 Y N N N N N 118.679 118.376 122.515 -4.464 -1.555 -0.486 C27 A1JGQ 18 A1JGQ C9 C18 C 0 1 Y N N N N N 123.406 111.434 121.132 2.668 -0.252 0.798 C9 A1JGQ 19 A1JGQ F23 F1 F 0 1 N N N N N N 121.031 119.047 119.826 -6.942 0.959 0.396 F23 A1JGQ 20 A1JGQ N20 N2 N 0 1 N N N N N N 121.137 118.141 122.400 -4.207 0.582 0.609 N20 A1JGQ 21 A1JGQ N5 N3 N 0 1 N N N N N N 122.312 114.949 120.685 -0.638 1.511 0.472 N5 A1JGQ 22 A1JGQ O12 O1 O 0 1 N N N N N N 125.988 109.141 121.263 5.107 -1.660 1.152 O12 A1JGQ 23 A1JGQ O13 O2 O 0 1 N N N N N N 124.149 108.462 120.121 6.101 -0.568 -0.509 O13 A1JGQ 24 A1JGQ O19 O3 O 0 1 N N N N N N 122.876 116.718 122.590 -2.456 -0.044 -0.602 O19 A1JGQ 25 A1JGQ O7 O4 O 0 1 N N N N N N 121.378 113.447 121.867 -0.097 -0.081 1.945 O7 A1JGQ 26 A1JGQ S1 S1 S 0 1 Y N N N N N 125.358 111.998 119.562 3.541 1.154 -1.150 S1 A1JGQ 27 A1JGQ H1 H1 H 0 1 N N N N N N 123.303 116.358 119.466 -0.978 2.993 -0.976 H1 A1JGQ 28 A1JGQ H2 H2 H 0 1 N N N N N N 125.306 105.333 120.395 9.303 -1.496 -1.041 H2 A1JGQ 29 A1JGQ H3 H3 H 0 1 N N N N N N 124.708 106.152 118.913 8.062 -1.100 -2.254 H3 A1JGQ 30 A1JGQ H4 H4 H 0 1 N N N N N N 126.173 106.768 119.750 8.613 0.144 -1.107 H4 A1JGQ 31 A1JGQ H5 H5 H 0 1 N N N N N N 120.901 116.414 120.195 -2.361 2.635 0.877 H5 A1JGQ 32 A1JGQ H6 H6 H 0 1 N N N N N N 120.455 115.342 121.566 -1.986 1.371 2.072 H6 A1JGQ 33 A1JGQ H7 H7 H 0 1 N N N N N N 118.657 119.652 118.874 -8.262 -0.979 -0.749 H7 A1JGQ 34 A1JGQ H8 H8 H 0 1 N N N N N N 116.557 118.642 122.455 -4.838 -3.422 -1.457 H8 A1JGQ 35 A1JGQ H9 H9 H 0 1 N N N N N N 123.325 106.753 120.893 7.091 -2.399 -0.379 H9 A1JGQ 36 A1JGQ H10 H10 H 0 1 N N N N N N 124.791 107.368 121.730 7.642 -1.155 0.768 H10 A1JGQ 37 A1JGQ H11 H11 H 0 1 N N N N N N 122.900 110.653 123.084 2.246 -2.211 1.533 H11 A1JGQ 38 A1JGQ H12 H12 H 0 1 N N N N N N 121.492 110.929 122.003 3.569 -1.371 2.376 H12 A1JGQ 39 A1JGQ H13 H13 H 0 1 N N N N N N 122.579 109.526 121.723 1.880 -0.895 2.674 H13 A1JGQ 40 A1JGQ H14 H14 H 0 1 N N N N N N 116.542 119.454 120.130 -7.265 -3.053 -1.623 H14 A1JGQ 41 A1JGQ H15 H15 H 0 1 N N N N N N 118.688 118.022 123.535 -3.399 -1.718 -0.416 H15 A1JGQ 42 A1JGQ H16 H16 H 0 1 N N N N N N 121.545 118.770 123.062 -4.580 1.199 1.258 H16 A1JGQ 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JGQ N3 C4 DOUB N N 1 A1JGQ N3 C2 SING N N 2 A1JGQ S1 C2 SING Y N 3 A1JGQ S1 C10 SING Y N 4 A1JGQ F23 C22 SING N N 5 A1JGQ C4 N5 SING N N 6 A1JGQ C15 C14 SING N N 7 A1JGQ C24 C22 DOUB Y N 8 A1JGQ C24 C25 SING Y N 9 A1JGQ C2 C8 DOUB Y N 10 A1JGQ O13 C11 SING N N 11 A1JGQ O13 C14 SING N N 12 A1JGQ C22 C21 SING Y N 13 A1JGQ C10 C11 SING N N 14 A1JGQ C10 C9 DOUB Y N 15 A1JGQ C25 C26 DOUB Y N 16 A1JGQ N5 C17 SING N N 17 A1JGQ N5 C6 SING N N 18 A1JGQ C11 O12 DOUB N N 19 A1JGQ C8 C9 SING Y N 20 A1JGQ C8 C6 SING N N 21 A1JGQ C17 C18 SING N N 22 A1JGQ C9 C16 SING N N 23 A1JGQ C6 O7 DOUB N N 24 A1JGQ C21 N20 SING N N 25 A1JGQ C21 C27 DOUB Y N 26 A1JGQ C26 C27 SING Y N 27 A1JGQ C18 N20 SING N N 28 A1JGQ C18 O19 DOUB N N 29 A1JGQ C4 H1 SING N N 30 A1JGQ C15 H2 SING N N 31 A1JGQ C15 H3 SING N N 32 A1JGQ C15 H4 SING N N 33 A1JGQ C17 H5 SING N N 34 A1JGQ C17 H6 SING N N 35 A1JGQ C24 H7 SING N N 36 A1JGQ C26 H8 SING N N 37 A1JGQ C14 H9 SING N N 38 A1JGQ C14 H10 SING N N 39 A1JGQ C16 H11 SING N N 40 A1JGQ C16 H12 SING N N 41 A1JGQ C16 H13 SING N N 42 A1JGQ C25 H14 SING N N 43 A1JGQ C27 H15 SING N N 44 A1JGQ N20 H16 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JGQ InChI InChI 1.06 "InChI=1S/C18H16FN3O4S/c1-3-26-18(25)15-10(2)14-16(27-15)20-9-22(17(14)24)8-13(23)21-12-7-5-4-6-11(12)19/h4-7,9H,3,8H2,1-2H3,(H,21,23)" A1JGQ InChIKey InChI 1.06 DZNORLMIVACGBN-UHFFFAOYSA-N A1JGQ SMILES_CANONICAL CACTVS 3.385 "CCOC(=O)c1sc2N=CN(CC(=O)Nc3ccccc3F)C(=O)c2c1C" A1JGQ SMILES CACTVS 3.385 "CCOC(=O)c1sc2N=CN(CC(=O)Nc3ccccc3F)C(=O)c2c1C" A1JGQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOC(=O)c1c(c2c(s1)N=CN(C2=O)CC(=O)Nc3ccccc3F)C" A1JGQ SMILES "OpenEye OEToolkits" 2.0.7 "CCOC(=O)c1c(c2c(s1)N=CN(C2=O)CC(=O)Nc3ccccc3F)C" # _pdbx_chem_comp_identifier.comp_id A1JGQ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "ethyl 3-[2-[(2-fluorophenyl)amino]-2-oxidanylidene-ethyl]-5-methyl-4-oxidanylidene-thieno[2,3-d]pyrimidine-6-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JGQ "Create component" 2025-06-12 PDBE A1JGQ "Initial release" 2025-12-24 RCSB #