data_A1JGW # _chem_comp.id A1JGW _chem_comp.name "~{N}-[(5~{R},6~{S},9~{S},10~{S},11~{R})-2-butan-2-ylidene-5,11-dimethyl-10-oxidanyl-3,7,12-tris(oxidanylidene)-9-(pyridin-3-ylmethyl)-1,4-dioxa-8-azacyclododec-6-yl]-2-oxidanyl-benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H33 N3 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-06-16 _chem_comp.pdbx_modified_date 2026-02-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 539.577 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JGW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RJH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JGW C4 C1 C 0 1 N N N N N N -27.312 -11.702 86.831 -5.379 3.419 -0.286 C4 A1JGW 1 A1JGW C5 C2 C 0 1 N N N N N N -25.636 -13.427 86.123 -4.255 1.225 -0.316 C5 A1JGW 2 A1JGW C7 C3 C 0 1 N N N N N N -23.517 -13.719 85.017 -3.347 -0.897 0.032 C7 A1JGW 3 A1JGW C10 C4 C 0 1 N N N N N N -21.311 -13.304 86.020 -4.418 -3.075 -0.465 C10 A1JGW 4 A1JGW C13 C5 C 0 1 N N S N N N -21.966 -16.048 83.357 -0.649 -2.515 -0.080 C13 A1JGW 5 A1JGW C15 C6 C 0 1 Y N N N N N -21.742 -17.621 81.340 1.748 -3.142 -0.215 C15 A1JGW 6 A1JGW C17 C7 C 0 1 Y N N N N N -23.180 -18.489 79.624 3.821 -2.025 0.143 C17 A1JGW 7 A1JGW C20 C8 C 0 1 Y N N N N N -21.476 -18.936 81.688 2.185 -3.463 -1.486 C20 A1JGW 8 A1JGW C22 C9 C 0 1 N N N N N N -24.294 -16.799 83.456 0.148 -0.253 -0.084 C22 A1JGW 9 A1JGW C24 C10 C 0 1 N N S N N N -25.705 -16.648 82.886 0.469 1.055 0.597 C24 A1JGW 10 A1JGW C26 C11 C 0 1 N N N N N N -26.454 -18.091 81.061 2.903 1.125 0.686 C26 A1JGW 11 A1JGW C28 C12 C 0 1 Y N N N N N -26.435 -19.492 80.547 4.202 1.628 0.202 C28 A1JGW 12 A1JGW C1 C13 C 0 1 N N N N N N -24.404 -11.650 88.629 -7.418 0.931 0.599 C1 A1JGW 13 A1JGW C2 C14 C 0 1 N N N N N N -25.591 -12.515 88.423 -6.687 1.202 -0.718 C2 A1JGW 14 A1JGW C3 C15 C 0 1 N N N N N N -26.088 -12.549 87.041 -5.392 1.919 -0.435 C3 A1JGW 15 A1JGW O6 O1 O 0 1 N N N N N N -24.303 -13.863 86.150 -4.246 -0.103 -0.561 O6 A1JGW 16 A1JGW O8 O2 O 0 1 N N N N N N -23.894 -13.155 84.028 -2.734 -0.504 0.994 O8 A1JGW 17 A1JGW C9 C16 C 0 1 N N R N N N -22.142 -14.314 85.239 -3.108 -2.282 -0.511 C9 A1JGW 18 A1JGW C11 C17 C 0 1 N N S N N N -21.447 -14.743 83.935 -2.043 -3.015 0.300 C11 A1JGW 19 A1JGW O12 O3 O 0 1 N N N N N N -21.498 -13.698 82.973 -2.268 -2.844 1.698 O12 A1JGW 20 A1JGW C14 C18 C 0 1 N N N N N N -21.146 -16.472 82.121 0.389 -3.589 0.260 C14 A1JGW 21 A1JGW C16 C19 C 0 1 Y N N N N N -22.612 -17.411 80.281 2.577 -2.410 0.620 C16 A1JGW 22 A1JGW C18 C20 C 0 1 Y N N N N N -22.850 -19.757 80.052 4.190 -2.382 -1.140 C18 A1JGW 23 A1JGW N19 N1 N 0 1 Y N N N N N -22.008 -19.996 81.071 3.375 -3.080 -1.907 N19 A1JGW 24 A1JGW N21 N2 N 0 1 N N N N N N -23.380 -15.932 83.011 -0.354 -1.276 0.687 N21 A1JGW 25 A1JGW O23 O4 O 0 1 N N N N N N -24.017 -17.736 84.207 0.331 -0.392 -1.274 O23 A1JGW 26 A1JGW N25 N3 N 0 1 N N N N N N -26.004 -17.939 82.307 1.759 1.554 0.116 N25 A1JGW 27 A1JGW O27 O5 O 0 1 N N N N N N -26.836 -17.150 80.369 2.863 0.325 1.601 O27 A1JGW 28 A1JGW C29 C21 C 0 1 Y N N N N N -26.622 -19.656 79.178 4.253 2.547 -0.849 C29 A1JGW 29 A1JGW C30 C22 C 0 1 Y N N N N N -26.444 -20.894 78.591 5.470 3.013 -1.296 C30 A1JGW 30 A1JGW C31 C23 C 0 1 Y N N N N N -26.093 -21.984 79.352 6.645 2.574 -0.710 C31 A1JGW 31 A1JGW C32 C24 C 0 1 Y N N N N N -25.910 -21.856 80.711 6.610 1.665 0.329 C32 A1JGW 32 A1JGW C33 C25 C 0 1 Y N N N N N -26.072 -20.618 81.318 5.394 1.190 0.796 C33 A1JGW 33 A1JGW O34 O6 O 0 1 N N N N N N -25.769 -20.526 82.633 5.358 0.297 1.817 O34 A1JGW 34 A1JGW C35 C26 C 0 1 N N R N N N -26.709 -16.238 83.967 -0.628 2.073 0.270 C35 A1JGW 35 A1JGW C36 C27 C 0 1 N N N N N N -27.240 -17.379 84.808 -0.145 2.995 -0.852 C36 A1JGW 36 A1JGW O37 O7 O 0 1 N N N N N N -25.942 -15.353 84.840 -1.819 1.365 -0.155 O37 A1JGW 37 A1JGW C38 C28 C 0 1 N N N N N N -26.516 -14.198 85.214 -3.015 1.948 0.028 C38 A1JGW 38 A1JGW O39 O8 O 0 1 N N N N N N -27.636 -13.876 84.901 -3.089 3.071 0.491 O39 A1JGW 39 A1JGW H4C H1 H 0 1 N N N N N N -27.631 -11.772 85.781 -6.369 3.815 -0.508 H4C A1JGW 40 A1JGW H4B H2 H 0 1 N N N N N N -28.122 -12.059 87.484 -5.104 3.680 0.736 H4B A1JGW 41 A1JGW H4A H3 H 0 1 N N N N N N -27.079 -10.655 87.075 -4.653 3.846 -0.978 H4A A1JGW 42 A1JGW H10C H4 H 0 0 N N N N N N -20.305 -13.713 86.195 -5.170 -2.569 -1.071 H10C A1JGW 43 A1JGW H10A H5 H 0 0 N N N N N N -21.232 -12.370 85.444 -4.250 -4.078 -0.857 H10A A1JGW 44 A1JGW H10B H6 H 0 0 N N N N N N -21.796 -13.099 86.986 -4.767 -3.141 0.566 H10B A1JGW 45 A1JGW H13 H7 H 0 1 N N N N N N -21.850 -16.830 84.122 -0.617 -2.309 -1.151 H13 A1JGW 46 A1JGW H17 H8 H 0 1 N N N N N N -23.862 -18.341 78.800 4.493 -1.453 0.766 H17 A1JGW 47 A1JGW H20 H9 H 0 1 N N N N N N -20.797 -19.115 82.508 1.545 -4.033 -2.143 H20 A1JGW 48 A1JGW H24 H10 H 0 1 N N N N N N -25.692 -15.877 82.102 0.515 0.902 1.675 H24 A1JGW 49 A1JGW H1C H11 H 0 1 N N N N N N -24.103 -11.685 89.686 -6.792 0.311 1.241 H1C A1JGW 50 A1JGW H1B H12 H 0 1 N N N N N N -23.576 -12.008 88.000 -7.628 1.876 1.099 H1B A1JGW 51 A1JGW H1A H13 H 0 1 N N N N N N -24.653 -10.615 88.353 -8.354 0.412 0.394 H1A A1JGW 52 A1JGW H2B H14 H 0 1 N N N N N N -25.324 -13.541 88.717 -6.477 0.256 -1.218 H2B A1JGW 53 A1JGW H2A H15 H 0 1 N N N N N N -26.401 -12.147 89.070 -7.313 1.821 -1.360 H2A A1JGW 54 A1JGW H9 H16 H 0 1 N N N N N N -22.258 -15.211 85.865 -2.780 -2.204 -1.551 H9 A1JGW 55 A1JGW H11 H17 H 0 1 N N N N N N -20.390 -14.912 84.189 -2.102 -4.087 0.068 H11 A1JGW 56 A1JGW H12 H18 H 0 1 N N N N N N -22.318 -13.226 83.061 -3.123 -3.178 2.002 H12 A1JGW 57 A1JGW H14B H19 H 0 0 N N N N N N -21.064 -15.605 81.449 0.413 -3.742 1.339 H14B A1JGW 58 A1JGW H14A H20 H 0 0 N N N N N N -20.143 -16.770 82.460 0.120 -4.523 -0.233 H14A A1JGW 59 A1JGW H16 H21 H 0 1 N N N N N N -22.847 -16.404 79.968 2.262 -2.144 1.619 H16 A1JGW 60 A1JGW H18 H22 H 0 1 N N N N N N -23.291 -20.601 79.542 5.157 -2.086 -1.519 H18 A1JGW 61 A1JGW H21 H23 H 0 1 N N N N N N -23.674 -15.179 82.422 -0.493 -1.192 1.644 H21 A1JGW 62 A1JGW H25 H24 H 0 1 N N N N N N -25.867 -18.756 82.867 1.791 2.192 -0.614 H25 A1JGW 63 A1JGW H29 H25 H 0 1 N N N N N N -26.908 -18.810 78.570 3.339 2.892 -1.309 H29 A1JGW 64 A1JGW H30 H26 H 0 1 N N N N N N -26.582 -21.006 77.526 5.508 3.724 -2.109 H30 A1JGW 65 A1JGW H31 H27 H 0 1 N N N N N N -25.960 -22.947 78.881 7.595 2.944 -1.068 H31 A1JGW 66 A1JGW H32 H28 H 0 1 N N N N N N -25.641 -22.718 81.304 7.531 1.327 0.781 H32 A1JGW 67 A1JGW H34 H29 H 0 1 N N N N N N -25.919 -19.637 82.932 5.310 0.703 2.693 H34 A1JGW 68 A1JGW H35 H30 H 0 1 N N N N N N -27.546 -15.694 83.505 -0.848 2.665 1.158 H35 A1JGW 69 A1JGW H36B H31 H 0 0 N N N N N N -27.950 -16.988 85.552 0.078 2.402 -1.739 H36B A1JGW 70 A1JGW H36A H32 H 0 0 N N N N N N -27.752 -18.105 84.159 -0.924 3.721 -1.087 H36A A1JGW 71 A1JGW H36C H33 H 0 0 N N N N N N -26.404 -17.874 85.324 0.755 3.519 -0.530 H36C A1JGW 72 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JGW C1 C2 SING N N 1 A1JGW C2 C3 SING N N 2 A1JGW C3 C4 SING N N 3 A1JGW C3 C5 DOUB N Z 4 A1JGW C5 O6 SING N N 5 A1JGW O6 C7 SING N N 6 A1JGW C7 O8 DOUB N N 7 A1JGW C7 C9 SING N N 8 A1JGW C9 C10 SING N N 9 A1JGW C9 C11 SING N N 10 A1JGW C11 O12 SING N N 11 A1JGW C11 C13 SING N N 12 A1JGW C13 C14 SING N N 13 A1JGW C14 C15 SING N N 14 A1JGW C15 C16 DOUB Y N 15 A1JGW C16 C17 SING Y N 16 A1JGW C17 C18 DOUB Y N 17 A1JGW C18 N19 SING Y N 18 A1JGW N19 C20 DOUB Y N 19 A1JGW C13 N21 SING N N 20 A1JGW N21 C22 SING N N 21 A1JGW C22 O23 DOUB N N 22 A1JGW C22 C24 SING N N 23 A1JGW C24 N25 SING N N 24 A1JGW N25 C26 SING N N 25 A1JGW C26 O27 DOUB N N 26 A1JGW C26 C28 SING N N 27 A1JGW C28 C29 DOUB Y N 28 A1JGW C29 C30 SING Y N 29 A1JGW C30 C31 DOUB Y N 30 A1JGW C31 C32 SING Y N 31 A1JGW C32 C33 DOUB Y N 32 A1JGW C33 O34 SING N N 33 A1JGW C24 C35 SING N N 34 A1JGW C35 C36 SING N N 35 A1JGW C35 O37 SING N N 36 A1JGW O37 C38 SING N N 37 A1JGW C38 O39 DOUB N N 38 A1JGW C38 C5 SING N N 39 A1JGW C20 C15 SING Y N 40 A1JGW C33 C28 SING Y N 41 A1JGW C4 H4C SING N N 42 A1JGW C4 H4B SING N N 43 A1JGW C4 H4A SING N N 44 A1JGW C10 H10C SING N N 45 A1JGW C10 H10A SING N N 46 A1JGW C10 H10B SING N N 47 A1JGW C13 H13 SING N N 48 A1JGW C17 H17 SING N N 49 A1JGW C20 H20 SING N N 50 A1JGW C24 H24 SING N N 51 A1JGW C1 H1C SING N N 52 A1JGW C1 H1B SING N N 53 A1JGW C1 H1A SING N N 54 A1JGW C2 H2B SING N N 55 A1JGW C2 H2A SING N N 56 A1JGW C9 H9 SING N N 57 A1JGW C11 H11 SING N N 58 A1JGW O12 H12 SING N N 59 A1JGW C14 H14B SING N N 60 A1JGW C14 H14A SING N N 61 A1JGW C16 H16 SING N N 62 A1JGW C18 H18 SING N N 63 A1JGW N21 H21 SING N N 64 A1JGW N25 H25 SING N N 65 A1JGW C29 H29 SING N N 66 A1JGW C30 H30 SING N N 67 A1JGW C31 H31 SING N N 68 A1JGW C32 H32 SING N N 69 A1JGW O34 H34 SING N N 70 A1JGW C35 H35 SING N N 71 A1JGW C36 H36B SING N N 72 A1JGW C36 H36A SING N N 73 A1JGW C36 H36C SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JGW InChI InChI 1.06 "InChI=1S/C28H33N3O8/c1-5-15(2)24-28(37)38-17(4)22(31-25(34)19-10-6-7-11-21(19)32)26(35)30-20(13-18-9-8-12-29-14-18)23(33)16(3)27(36)39-24/h6-12,14,16-17,20,22-23,32-33H,5,13H2,1-4H3,(H,30,35)(H,31,34)/b24-15-" A1JGW InChIKey InChI 1.06 ATVCZOYMHUQOLB-IWIPYMOSSA-N A1JGW SMILES_CANONICAL CACTVS 3.385 "CCC(/C)=C1\OC(=O)[C@H](C)[C@H](O)[C@H](Cc2cccnc2)NC(=O)[C@@H](NC(=O)c3ccccc3O)[C@@H](C)OC1=O" A1JGW SMILES CACTVS 3.385 "CCC(C)=C1OC(=O)[CH](C)[CH](O)[CH](Cc2cccnc2)NC(=O)[CH](NC(=O)c3ccccc3O)[CH](C)OC1=O" A1JGW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=C1C(=O)O[C@@H]([C@@H](C(=O)N[C@H]([C@H]([C@H](C(=O)O1)C)O)Cc2cccnc2)NC(=O)c3ccccc3O)C)C" A1JGW SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=C1C(=O)OC(C(C(=O)NC(C(C(C(=O)O1)C)O)Cc2cccnc2)NC(=O)c3ccccc3O)C)C" # _pdbx_chem_comp_identifier.comp_id A1JGW _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(5~{R},6~{S},9~{S},10~{S},11~{R})-2-butan-2-ylidene-5,11-dimethyl-10-oxidanyl-3,7,12-tris(oxidanylidene)-9-(pyridin-3-ylmethyl)-1,4-dioxa-8-azacyclododec-6-yl]-2-oxidanyl-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JGW "Create component" 2025-06-16 PDBE A1JGW "Initial release" 2026-02-11 RCSB #