data_A1JGY # _chem_comp.id A1JGY _chem_comp.name "~{N}-[(2~{Z},5~{R},6~{S},9~{S},10~{S},11~{R})-2-butan-2-ylidene-5,11-dimethyl-10-oxidanyl-3,7,12-tris(oxidanylidene)-9-(pyridin-3-ylmethyl)-1,4-dioxa-8-azacyclododec-6-yl]-4-chloranyl-3-oxidanyl-pyridine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H31 Cl N4 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-06-16 _chem_comp.pdbx_modified_date 2026-02-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 575.010 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JGY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RJL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JGY C4 C1 C 0 1 N N N N N N -26.503 -10.986 87.240 -4.423 4.467 -0.709 C4 A1JGY 1 A1JGY C5 C2 C 0 1 N N N N N N -25.026 -12.847 86.444 -4.118 2.035 -0.444 C5 A1JGY 2 A1JGY C7 C3 C 0 1 N N N N N N -22.958 -13.079 85.103 -3.962 -0.209 0.178 C7 A1JGY 3 A1JGY C10 C4 C 0 1 N N N N N N -20.649 -12.749 85.913 -5.742 -1.925 0.022 C10 A1JGY 4 A1JGY C13 C5 C 0 1 N N S N N N -21.643 -15.551 83.390 -1.990 -2.662 0.227 C13 A1JGY 5 A1JGY C15 C6 C 0 1 Y N N N N N -21.617 -17.188 81.410 0.036 -4.091 0.125 C15 A1JGY 6 A1JGY C17 C7 C 0 1 Y N N N N N -23.229 -18.108 79.892 2.376 -3.657 0.235 C17 A1JGY 7 A1JGY C20 C8 C 0 1 Y N N N N N -21.239 -18.490 81.690 0.258 -4.767 -1.060 C20 A1JGY 8 A1JGY C22 C9 C 0 1 N N N N N N -23.997 -16.203 83.562 -0.474 -0.836 -0.116 C22 A1JGY 9 A1JGY C24 C10 C 0 1 N N S N N N -25.414 -15.918 83.084 0.320 0.354 0.364 C24 A1JGY 10 A1JGY C26 C11 C 0 1 N N N N N N -26.810 -17.046 81.452 2.704 0.851 0.451 C26 A1JGY 11 A1JGY C28 C12 C 0 1 Y N N N N N -27.088 -18.329 80.749 4.039 0.908 -0.181 C28 A1JGY 12 A1JGY C1 C13 C 0 1 N N N N N N -23.257 -10.897 88.314 -7.108 2.981 0.600 C1 A1JGY 13 A1JGY C2 C14 C 0 1 N N N N N N -24.514 -11.710 88.576 -6.437 2.807 -0.764 C2 A1JGY 14 A1JGY C3 C15 C 0 1 N N N N N N -25.325 -11.911 87.364 -4.957 3.060 -0.631 C3 A1JGY 15 A1JGY O6 O1 O 0 1 N N N N N N -23.717 -13.285 86.237 -4.578 0.767 -0.499 O6 A1JGY 16 A1JGY O8 O2 O 0 1 N N N N N N -23.358 -12.458 84.159 -3.184 0.063 1.059 O8 A1JGY 17 A1JGY C9 C16 C 0 1 N N R N N N -21.597 -13.734 85.233 -4.248 -1.648 -0.170 C9 A1JGY 18 A1JGY C11 C17 C 0 1 N N S N N N -21.042 -14.226 83.884 -3.439 -2.597 0.710 C11 A1JGY 19 A1JGY O12 O3 O 0 1 N N N N N N -21.160 -13.202 82.906 -3.491 -2.187 2.074 O12 A1JGY 20 A1JGY C14 C18 C 0 1 N N N N N N -20.951 -16.019 82.098 -1.357 -3.978 0.690 C14 A1JGY 21 A1JGY C16 C19 C 0 1 Y N N N N N -22.633 -17.012 80.486 1.112 -3.523 0.789 C16 A1JGY 22 A1JGY C18 C20 C 0 1 Y N N N N N -22.777 -19.363 80.242 2.520 -4.347 -0.953 C18 A1JGY 23 A1JGY N19 N1 N 0 1 Y N N N N N -21.793 -19.569 81.127 1.474 -4.875 -1.558 N19 A1JGY 24 A1JGY N21 N2 N 0 1 N N N N N N -23.064 -15.346 83.144 -1.236 -1.518 0.803 N21 A1JGY 25 A1JGY O23 O4 O 0 1 N N N N N N -23.741 -17.218 84.200 -0.436 -1.176 -1.280 O23 A1JGY 26 A1JGY N25 N3 N 0 1 N N N N N N -25.877 -17.106 82.403 1.665 0.311 -0.216 N25 A1JGY 27 A1JGY O27 O5 O 0 1 N N N N N N -27.407 -16.009 81.164 2.543 1.293 1.572 O27 A1JGY 28 A1JGY C29 C21 C 0 1 Y N N N N N -26.475 -19.540 81.004 5.136 1.368 0.554 C29 A1JGY 29 A1JGY O30 O6 O 0 1 N N N N N N -25.778 -19.774 82.161 4.986 1.763 1.843 O30 A1JGY 30 A1JGY C31 C22 C 0 1 Y N N N N N -26.600 -20.572 80.082 6.388 1.413 -0.060 C31 A1JGY 31 A1JGY CL32 CL1 CL 0 0 N N N N N N -25.883 -22.112 80.424 7.783 1.975 0.807 CL32 A1JGY 32 A1JGY C33 C23 C 0 1 Y N N N N N -27.336 -20.405 78.934 6.491 0.999 -1.377 C33 A1JGY 33 A1JGY C34 C24 C 0 1 Y N N N N N -27.935 -19.173 78.766 5.357 0.555 -2.042 C34 A1JGY 34 A1JGY N35 N4 N 0 1 Y N N N N N -27.834 -18.159 79.641 4.189 0.516 -1.441 N35 A1JGY 35 A1JGY C36 C25 C 0 1 N N R N N N -26.348 -15.455 84.206 -0.386 1.640 -0.076 C36 A1JGY 36 A1JGY C37 C26 C 0 1 N N N N N N -26.985 -16.571 84.998 0.299 2.191 -1.329 C37 A1JGY 37 A1JGY O38 O7 O 0 1 N N N N N N -25.509 -14.681 85.110 -1.775 1.341 -0.367 O38 A1JGY 38 A1JGY C39 C27 C 0 1 N N N N N N -26.007 -13.525 85.570 -2.685 2.320 -0.237 C39 A1JGY 39 A1JGY O40 O8 O 0 1 N N N N N N -27.109 -13.109 85.297 -2.339 3.448 0.064 O40 A1JGY 40 A1JGY H4C H1 H 0 1 N N N N N N -27.047 -11.207 86.310 -5.236 5.151 -0.952 H4C A1JGY 41 A1JGY H4B H2 H 0 1 N N N N N N -27.173 -11.129 88.100 -3.990 4.745 0.252 H4B A1JGY 42 A1JGY H4A H3 H 0 1 N N N N N N -26.150 -9.944 87.219 -3.657 4.523 -1.483 H4A A1JGY 43 A1JGY H10C H4 H 0 0 N N N N N N -19.655 -13.208 86.016 -6.320 -1.270 -0.631 H10C A1JGY 44 A1JGY H10A H5 H 0 0 N N N N N N -20.570 -11.836 85.304 -5.954 -2.964 -0.229 H10A A1JGY 45 A1JGY H10B H6 H 0 0 N N N N N N -21.039 -12.493 86.909 -6.017 -1.738 1.060 H10B A1JGY 46 A1JGY H13 H7 H 0 1 N N N N N N -21.503 -16.317 84.167 -1.967 -2.614 -0.862 H13 A1JGY 47 A1JGY H17 H8 H 0 1 N N N N N N -24.026 -17.985 79.174 3.236 -3.227 0.726 H17 A1JGY 48 A1JGY H20 H9 H 0 1 N N N N N N -20.447 -18.644 82.408 -0.575 -5.213 -1.584 H20 A1JGY 49 A1JGY H24 H10 H 0 1 N N N N N N -25.355 -15.100 82.351 0.389 0.330 1.451 H24 A1JGY 50 A1JGY H1C H11 H 0 1 N N N N N N -22.694 -10.780 89.251 -6.681 2.271 1.308 H1C A1JGY 51 A1JGY H1B H12 H 0 1 N N N N N N -22.632 -11.417 87.573 -6.944 3.997 0.959 H1B A1JGY 52 A1JGY H1A H13 H 0 1 N N N N N N -23.536 -9.906 87.927 -8.179 2.798 0.503 H1A A1JGY 53 A1JGY H2B H14 H 0 1 N N N N N N -24.221 -12.694 88.970 -6.601 1.791 -1.123 H2B A1JGY 54 A1JGY H2A H15 H 0 1 N N N N N N -25.124 -11.183 89.324 -6.864 3.517 -1.473 H2A A1JGY 55 A1JGY H9 H16 H 0 1 N N N N N N -21.703 -14.609 85.891 -3.989 -1.818 -1.218 H9 A1JGY 56 A1JGY H11 H17 H 0 1 N N N N N N -19.970 -14.414 84.042 -3.875 -3.602 0.633 H11 A1JGY 57 A1JGY H12 H18 H 0 1 N N N N N N -21.938 -12.685 83.080 -4.384 -2.163 2.445 H12 A1JGY 58 A1JGY H14B H19 H 0 0 N N N N N N -20.932 -15.174 81.395 -1.309 -3.996 1.779 H14B A1JGY 59 A1JGY H14A H20 H 0 0 N N N N N N -19.920 -16.311 82.348 -1.960 -4.815 0.339 H14A A1JGY 60 A1JGY H16 H21 H 0 1 N N N N N N -22.961 -16.015 80.229 0.968 -2.988 1.717 H16 A1JGY 61 A1JGY H18 H22 H 0 1 N N N N N N -23.239 -20.222 79.779 3.501 -4.456 -1.391 H18 A1JGY 62 A1JGY H21 H23 H 0 1 N N N N N N -23.352 -14.530 82.642 -1.269 -1.272 1.743 H21 A1JGY 63 A1JGY H25 H24 H 0 1 N N N N N N -25.489 -17.994 82.651 1.808 -0.107 -1.079 H25 A1JGY 64 A1JGY H30 H25 H 0 1 N N N N N N -25.433 -20.659 82.150 5.181 1.072 2.492 H30 A1JGY 65 A1JGY H33 H26 H 0 1 N N N N N N -27.440 -21.194 78.204 7.445 1.021 -1.882 H33 A1JGY 66 A1JGY H34 H27 H 0 1 N N N N N N -28.523 -19.014 77.874 5.437 0.232 -3.070 H34 A1JGY 67 A1JGY H36 H28 H 0 1 N N N N N N -27.134 -14.816 83.779 -0.327 2.377 0.725 H36 A1JGY 68 A1JGY H37B H29 H 0 0 N N N N N N -27.635 -16.144 85.776 0.242 1.452 -2.129 H37B A1JGY 69 A1JGY H37A H30 H 0 0 N N N N N N -27.585 -17.202 84.325 -0.202 3.106 -1.645 H37A A1JGY 70 A1JGY H37C H31 H 0 0 N N N N N N -26.200 -17.180 85.469 1.344 2.406 -1.108 H37C A1JGY 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JGY C1 C2 SING N N 1 A1JGY C2 C3 SING N N 2 A1JGY C3 C4 SING N N 3 A1JGY C3 C5 DOUB N Z 4 A1JGY C5 O6 SING N N 5 A1JGY O6 C7 SING N N 6 A1JGY C7 O8 DOUB N N 7 A1JGY C7 C9 SING N N 8 A1JGY C9 C10 SING N N 9 A1JGY C9 C11 SING N N 10 A1JGY C11 O12 SING N N 11 A1JGY C11 C13 SING N N 12 A1JGY C13 C14 SING N N 13 A1JGY C14 C15 SING N N 14 A1JGY C15 C16 DOUB Y N 15 A1JGY C16 C17 SING Y N 16 A1JGY C17 C18 DOUB Y N 17 A1JGY C18 N19 SING Y N 18 A1JGY N19 C20 DOUB Y N 19 A1JGY C13 N21 SING N N 20 A1JGY N21 C22 SING N N 21 A1JGY C22 O23 DOUB N N 22 A1JGY C22 C24 SING N N 23 A1JGY C24 N25 SING N N 24 A1JGY N25 C26 SING N N 25 A1JGY C26 O27 DOUB N N 26 A1JGY C26 C28 SING N N 27 A1JGY C28 C29 DOUB Y N 28 A1JGY C29 O30 SING N N 29 A1JGY C29 C31 SING Y N 30 A1JGY C31 CL32 SING N N 31 A1JGY C31 C33 DOUB Y N 32 A1JGY C33 C34 SING Y N 33 A1JGY C34 N35 DOUB Y N 34 A1JGY C24 C36 SING N N 35 A1JGY C36 C37 SING N N 36 A1JGY C36 O38 SING N N 37 A1JGY O38 C39 SING N N 38 A1JGY C39 O40 DOUB N N 39 A1JGY C39 C5 SING N N 40 A1JGY C20 C15 SING Y N 41 A1JGY N35 C28 SING Y N 42 A1JGY C4 H4C SING N N 43 A1JGY C4 H4B SING N N 44 A1JGY C4 H4A SING N N 45 A1JGY C10 H10C SING N N 46 A1JGY C10 H10A SING N N 47 A1JGY C10 H10B SING N N 48 A1JGY C13 H13 SING N N 49 A1JGY C17 H17 SING N N 50 A1JGY C20 H20 SING N N 51 A1JGY C24 H24 SING N N 52 A1JGY C1 H1C SING N N 53 A1JGY C1 H1B SING N N 54 A1JGY C1 H1A SING N N 55 A1JGY C2 H2B SING N N 56 A1JGY C2 H2A SING N N 57 A1JGY C9 H9 SING N N 58 A1JGY C11 H11 SING N N 59 A1JGY O12 H12 SING N N 60 A1JGY C14 H14B SING N N 61 A1JGY C14 H14A SING N N 62 A1JGY C16 H16 SING N N 63 A1JGY C18 H18 SING N N 64 A1JGY N21 H21 SING N N 65 A1JGY N25 H25 SING N N 66 A1JGY O30 H30 SING N N 67 A1JGY C33 H33 SING N N 68 A1JGY C34 H34 SING N N 69 A1JGY C36 H36 SING N N 70 A1JGY C37 H37B SING N N 71 A1JGY C37 H37A SING N N 72 A1JGY C37 H37C SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JGY InChI InChI 1.06 "InChI=1S/C27H31ClN4O8/c1-5-13(2)23-27(38)39-15(4)19(32-25(36)20-22(34)17(28)8-10-30-20)24(35)31-18(11-16-7-6-9-29-12-16)21(33)14(3)26(37)40-23/h6-10,12,14-15,18-19,21,33-34H,5,11H2,1-4H3,(H,31,35)(H,32,36)/b23-13-" A1JGY InChIKey InChI 1.06 NUJGMBMWTLDLIX-QRVIBDJDSA-N A1JGY SMILES_CANONICAL CACTVS 3.385 "CCC(/C)=C1\OC(=O)[C@H](C)[C@H](O)[C@H](Cc2cccnc2)NC(=O)[C@@H](NC(=O)c3nccc(Cl)c3O)[C@@H](C)OC1=O" A1JGY SMILES CACTVS 3.385 "CCC(C)=C1OC(=O)[CH](C)[CH](O)[CH](Cc2cccnc2)NC(=O)[CH](NC(=O)c3nccc(Cl)c3O)[CH](C)OC1=O" A1JGY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC/C(=C\1/C(=O)O[C@@H]([C@@H](C(=O)N[C@H]([C@H]([C@H](C(=O)O1)C)O)Cc2cccnc2)NC(=O)c3c(c(ccn3)Cl)O)C)/C" A1JGY SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=C1C(=O)OC(C(C(=O)NC(C(C(C(=O)O1)C)O)Cc2cccnc2)NC(=O)c3c(c(ccn3)Cl)O)C)C" # _pdbx_chem_comp_identifier.comp_id A1JGY _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(2~{Z},5~{R},6~{S},9~{S},10~{S},11~{R})-2-butan-2-ylidene-5,11-dimethyl-10-oxidanyl-3,7,12-tris(oxidanylidene)-9-(pyridin-3-ylmethyl)-1,4-dioxa-8-azacyclododec-6-yl]-4-chloranyl-3-oxidanyl-pyridine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JGY "Create component" 2025-06-16 PDBE A1JGY "Initial release" 2026-02-11 RCSB #