data_A1JGZ # _chem_comp.id A1JGZ _chem_comp.name "~{N}-[(2~{Z},5~{R},6~{S},9~{S},10~{S},11~{R})-2-butan-2-ylidene-5,11-dimethyl-10-oxidanyl-3,7,12-tris(oxidanylidene)-9-(pyridin-3-ylmethyl)-1,4-dioxa-8-azacyclododec-6-yl]-3-oxidanyl-pyrazine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H31 N5 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-06-16 _chem_comp.pdbx_modified_date 2026-02-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 541.553 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JGZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RJN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JGZ C4 C1 C 0 1 N N N N N N 39.567 6.595 48.963 -4.476 4.070 -0.540 C4 A1JGZ 1 A1JGZ C5 C2 C 0 1 N N N N N N 39.434 6.658 46.462 -3.851 1.687 -0.459 C5 A1JGZ 2 A1JGZ C7 C3 C 0 1 N N N N N N 38.567 8.278 44.766 -3.435 -0.536 0.116 C7 A1JGZ 3 A1JGZ C10 C4 C 0 1 N N N N N N 39.918 10.145 43.870 -4.979 -2.456 -0.143 C10 A1JGZ 4 A1JGZ C13 C5 C 0 1 N N S N N N 37.489 8.027 41.707 -1.173 -2.724 0.179 C13 A1JGZ 5 A1JGZ C15 C6 C 0 1 Y N N N N N 35.807 7.263 39.941 1.015 -3.893 0.105 C15 A1JGZ 6 A1JGZ C17 C7 C 0 1 Y N N N N N 34.113 5.593 39.672 3.318 -3.344 0.367 C17 A1JGZ 7 A1JGZ C20 C8 C 0 1 Y N N N N N 36.442 6.699 38.848 1.307 -4.340 -1.170 C20 A1JGZ 8 A1JGZ C22 C9 C 0 1 N N N N N N 37.489 5.730 42.535 0.112 -0.715 -0.068 C22 A1JGZ 9 A1JGZ C24 C10 C 0 1 N N S N N N 36.780 4.672 43.378 0.735 0.551 0.468 C24 A1JGZ 10 A1JGZ C26 C11 C 0 1 N N N N N N 35.108 3.208 42.339 3.030 1.349 0.647 C26 A1JGZ 11 A1JGZ C28 C12 C 0 1 Y N N N N N 34.817 2.349 41.153 4.367 1.588 0.064 C28 A1JGZ 12 A1JGZ C1 C13 C 0 1 N N N N N N 41.052 9.213 47.662 -7.039 2.109 0.304 C1 A1JGZ 13 A1JGZ C2 C14 C 0 1 N N N N N N 41.348 7.743 47.584 -6.211 2.171 -0.980 C2 A1JGZ 14 A1JGZ C3 C15 C 0 1 N N N N N N 40.082 6.962 47.599 -4.806 2.604 -0.652 C3 A1JGZ 15 A1JGZ O6 O1 O 0 1 N N N N N N 39.521 7.484 45.347 -4.146 0.374 -0.559 O6 A1JGZ 16 A1JGZ O8 O2 O 0 1 N N N N N N 37.458 8.394 45.212 -2.726 -0.193 1.031 O8 A1JGZ 17 A1JGZ C9 C16 C 0 1 N N R N N N 39.099 8.913 43.496 -3.526 -1.989 -0.274 C9 A1JGZ 18 A1JGZ C11 C17 C 0 1 N N S N N N 37.978 9.234 42.491 -2.634 -2.854 0.611 C11 A1JGZ 19 A1JGZ O12 O3 O 0 1 N N N N N N 36.942 9.962 43.145 -2.781 -2.491 1.982 O12 A1JGZ 20 A1JGZ C14 C18 C 0 1 N N N N N N 36.419 8.431 40.679 -0.395 -3.964 0.633 C14 A1JGZ 21 A1JGZ C16 C19 C 0 1 Y N N N N N 34.617 6.685 40.348 2.036 -3.384 0.893 C16 A1JGZ 22 A1JGZ C18 C20 C 0 1 Y N N N N N 34.825 5.107 38.595 3.534 -3.809 -0.916 C18 A1JGZ 23 A1JGZ N19 N1 N 0 1 Y N N N N N 35.978 5.641 38.176 2.539 -4.286 -1.638 N19 A1JGZ 24 A1JGZ N21 N2 N 0 1 N N N N N N 36.979 6.963 42.567 -0.588 -1.511 0.808 N21 A1JGZ 25 A1JGZ O23 O4 O 0 1 N N N N N N 38.403 5.414 41.778 0.230 -1.015 -1.236 O23 A1JGZ 26 A1JGZ N25 N3 N 0 1 N N N N N N 36.356 3.680 42.409 2.092 0.692 -0.064 N25 A1JGZ 27 A1JGZ O27 O5 O 0 1 N N N N N N 34.244 3.467 43.172 2.775 1.747 1.767 O27 A1JGZ 28 A1JGZ C29 C21 C 0 1 Y N N N N N 35.826 2.026 40.193 5.306 2.369 0.752 C29 A1JGZ 29 A1JGZ O30 O6 O 0 1 N N N N N N 37.117 2.293 40.337 4.991 2.909 1.954 O30 A1JGZ 30 A1JGZ N31 N4 N 0 1 Y N N N N N 35.491 1.443 39.037 6.503 2.578 0.221 N31 A1JGZ 31 A1JGZ C32 C22 C 0 1 Y N N N N N 34.195 1.190 38.828 6.807 2.050 -0.951 C32 A1JGZ 32 A1JGZ C33 C23 C 0 1 Y N N N N N 33.227 1.501 39.755 5.877 1.277 -1.633 C33 A1JGZ 33 A1JGZ N34 N5 N 0 1 Y N N N N N 33.524 2.075 40.929 4.687 1.058 -1.114 N34 A1JGZ 34 A1JGZ C35 C24 C 0 1 N N R N N N 37.667 4.087 44.483 -0.113 1.751 0.033 C35 A1JGZ 35 A1JGZ C36 C25 C 0 1 N N N N N N 38.530 2.912 44.073 0.538 2.417 -1.182 C36 A1JGZ 36 A1JGZ O37 O7 O 0 1 N N N N N N 38.548 5.174 44.906 -1.442 1.289 -0.314 O37 A1JGZ 37 A1JGZ C38 C26 C 0 1 N N N N N N 38.628 5.444 46.229 -2.472 2.143 -0.194 C38 A1JGZ 38 A1JGZ O39 O8 O 0 1 N N N N N N 38.073 4.809 47.092 -2.280 3.296 0.145 O39 A1JGZ 39 A1JGZ H4C H1 H 0 1 N N N N N N 38.633 6.023 48.861 -5.373 4.660 -0.728 H4C A1JGZ 40 A1JGZ H4B H2 H 0 1 N N N N N N 40.317 5.983 49.485 -4.104 4.284 0.462 H4B A1JGZ 41 A1JGZ H4A H3 H 0 1 N N N N N N 39.375 7.511 49.541 -3.711 4.328 -1.273 H4A A1JGZ 42 A1JGZ H10C H4 H 0 0 N N N N N N 40.311 10.616 42.957 -5.613 -1.860 -0.800 H10C A1JGZ 43 A1JGZ H10B H5 H 0 0 N N N N N N 39.278 10.861 44.406 -5.051 -3.506 -0.425 H10B A1JGZ 44 A1JGZ H10A H6 H 0 0 N N N N N N 40.756 9.846 44.517 -5.309 -2.333 0.888 H10A A1JGZ 45 A1JGZ H13 H7 H 0 1 N N N N N N 38.347 7.631 41.144 -1.121 -2.645 -0.908 H13 A1JGZ 46 A1JGZ H17 H8 H 0 1 N N N N N N 33.186 5.131 39.978 4.137 -2.954 0.952 H17 A1JGZ 47 A1JGZ H20 H9 H 0 1 N N N N N N 37.370 7.141 38.518 0.518 -4.738 -1.791 H20 A1JGZ 48 A1JGZ H24 H10 H 0 1 N N N N N N 35.897 5.131 43.846 0.771 0.506 1.556 H24 A1JGZ 49 A1JGZ H1C H11 H 0 1 N N N N N N 41.995 9.779 47.650 -8.056 1.796 0.067 H1C A1JGZ 50 A1JGZ H1B H12 H 0 1 N N N N N N 40.436 9.509 46.800 -6.590 1.393 0.992 H1B A1JGZ 51 A1JGZ H1A H13 H 0 1 N N N N N N 40.507 9.428 48.593 -7.062 3.095 0.769 H1A A1JGZ 52 A1JGZ H2B H14 H 0 1 N N N N N N 41.894 7.531 46.653 -6.188 1.185 -1.446 H2B A1JGZ 53 A1JGZ H2A H15 H 0 1 N N N N N N 41.965 7.451 48.446 -6.660 2.887 -1.669 H2A A1JGZ 54 A1JGZ H9 H16 H 0 1 N N N N N N 39.778 8.192 43.017 -3.214 -2.097 -1.317 H9 A1JGZ 55 A1JGZ H11 H17 H 0 1 N N N N N N 38.428 9.912 41.750 -2.938 -3.903 0.496 H11 A1JGZ 56 A1JGZ H12 H18 H 0 1 N N N N N N 36.831 9.631 44.028 -3.681 -2.589 2.321 H12 A1JGZ 57 A1JGZ H14A H19 H 0 0 N N N N N N 35.616 8.966 41.207 -0.373 -4.000 1.722 H14A A1JGZ 58 A1JGZ H14B H20 H 0 0 N N N N N N 36.883 9.102 39.941 -0.882 -4.860 0.249 H14B A1JGZ 59 A1JGZ H16 H21 H 0 1 N N N N N N 34.083 7.089 41.195 1.837 -3.027 1.892 H16 A1JGZ 60 A1JGZ H18 H22 H 0 1 N N N N N N 34.432 4.253 38.064 4.530 -3.781 -1.333 H18 A1JGZ 61 A1JGZ H21 H23 H 0 1 N N N N N N 36.228 7.163 43.196 -0.682 -1.298 1.751 H21 A1JGZ 62 A1JGZ H25 H24 H 0 1 N N N N N N 37.032 3.331 41.760 2.316 0.312 -0.928 H25 A1JGZ 63 A1JGZ H30 H25 H 0 1 N N N N N N 37.588 2.010 39.562 5.276 2.378 2.710 H30 A1JGZ 64 A1JGZ H32 H26 H 0 1 N N N N N N 33.898 0.725 37.899 7.782 2.221 -1.381 H32 A1JGZ 65 A1JGZ H33 H27 H 0 1 N N N N N N 32.195 1.275 39.529 6.133 0.849 -2.591 H33 A1JGZ 66 A1JGZ H35 H28 H 0 1 N N N N N N 37.027 3.782 45.324 -0.173 2.467 0.852 H35 A1JGZ 67 A1JGZ H36B H29 H 0 0 N N N N N N 39.122 2.573 44.936 0.600 1.699 -2.000 H36B A1JGZ 68 A1JGZ H36A H30 H 0 0 N N N N N N 37.888 2.090 43.723 -0.064 3.271 -1.493 H36A A1JGZ 69 A1JGZ H36C H31 H 0 0 N N N N N N 39.207 3.220 43.262 1.540 2.755 -0.918 H36C A1JGZ 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JGZ C1 C2 SING N N 1 A1JGZ C2 C3 SING N N 2 A1JGZ C3 C4 SING N N 3 A1JGZ C3 C5 DOUB N Z 4 A1JGZ C5 O6 SING N N 5 A1JGZ O6 C7 SING N N 6 A1JGZ C7 O8 DOUB N N 7 A1JGZ C7 C9 SING N N 8 A1JGZ C9 C10 SING N N 9 A1JGZ C9 C11 SING N N 10 A1JGZ C11 O12 SING N N 11 A1JGZ C11 C13 SING N N 12 A1JGZ C13 C14 SING N N 13 A1JGZ C14 C15 SING N N 14 A1JGZ C15 C16 DOUB Y N 15 A1JGZ C16 C17 SING Y N 16 A1JGZ C17 C18 DOUB Y N 17 A1JGZ C18 N19 SING Y N 18 A1JGZ N19 C20 DOUB Y N 19 A1JGZ C13 N21 SING N N 20 A1JGZ N21 C22 SING N N 21 A1JGZ C22 O23 DOUB N N 22 A1JGZ C22 C24 SING N N 23 A1JGZ C24 N25 SING N N 24 A1JGZ N25 C26 SING N N 25 A1JGZ C26 O27 DOUB N N 26 A1JGZ C26 C28 SING N N 27 A1JGZ C28 C29 DOUB Y N 28 A1JGZ C29 O30 SING N N 29 A1JGZ C29 N31 SING Y N 30 A1JGZ N31 C32 DOUB Y N 31 A1JGZ C32 C33 SING Y N 32 A1JGZ C33 N34 DOUB Y N 33 A1JGZ C24 C35 SING N N 34 A1JGZ C35 C36 SING N N 35 A1JGZ C35 O37 SING N N 36 A1JGZ O37 C38 SING N N 37 A1JGZ C38 O39 DOUB N N 38 A1JGZ C38 C5 SING N N 39 A1JGZ C20 C15 SING Y N 40 A1JGZ N34 C28 SING Y N 41 A1JGZ C4 H4C SING N N 42 A1JGZ C4 H4B SING N N 43 A1JGZ C4 H4A SING N N 44 A1JGZ C10 H10C SING N N 45 A1JGZ C10 H10B SING N N 46 A1JGZ C10 H10A SING N N 47 A1JGZ C13 H13 SING N N 48 A1JGZ C17 H17 SING N N 49 A1JGZ C20 H20 SING N N 50 A1JGZ C24 H24 SING N N 51 A1JGZ C1 H1C SING N N 52 A1JGZ C1 H1B SING N N 53 A1JGZ C1 H1A SING N N 54 A1JGZ C2 H2B SING N N 55 A1JGZ C2 H2A SING N N 56 A1JGZ C9 H9 SING N N 57 A1JGZ C11 H11 SING N N 58 A1JGZ O12 H12 SING N N 59 A1JGZ C14 H14A SING N N 60 A1JGZ C14 H14B SING N N 61 A1JGZ C16 H16 SING N N 62 A1JGZ C18 H18 SING N N 63 A1JGZ N21 H21 SING N N 64 A1JGZ N25 H25 SING N N 65 A1JGZ O30 H30 SING N N 66 A1JGZ C32 H32 SING N N 67 A1JGZ C33 H33 SING N N 68 A1JGZ C35 H35 SING N N 69 A1JGZ C36 H36B SING N N 70 A1JGZ C36 H36A SING N N 71 A1JGZ C36 H36C SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JGZ InChI InChI 1.06 "InChI=1S/C26H31N5O8/c1-5-13(2)21-26(37)38-15(4)18(31-24(35)19-22(33)29-10-9-28-19)23(34)30-17(11-16-7-6-8-27-12-16)20(32)14(3)25(36)39-21/h6-10,12,14-15,17-18,20,32H,5,11H2,1-4H3,(H,29,33)(H,30,34)(H,31,35)/b21-13-" A1JGZ InChIKey InChI 1.06 YONUESXBMZATMJ-BKUYFWCQSA-N A1JGZ SMILES_CANONICAL CACTVS 3.385 "CCC(/C)=C1\OC(=O)[C@H](C)[C@H](O)[C@H](Cc2cccnc2)NC(=O)[C@@H](NC(=O)c3nccnc3O)[C@@H](C)OC1=O" A1JGZ SMILES CACTVS 3.385 "CCC(C)=C1OC(=O)[CH](C)[CH](O)[CH](Cc2cccnc2)NC(=O)[CH](NC(=O)c3nccnc3O)[CH](C)OC1=O" A1JGZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC/C(=C\1/C(=O)O[C@@H]([C@@H](C(=O)N[C@H]([C@H]([C@H](C(=O)O1)C)O)Cc2cccnc2)NC(=O)c3c(nccn3)O)C)/C" A1JGZ SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=C1C(=O)OC(C(C(=O)NC(C(C(C(=O)O1)C)O)Cc2cccnc2)NC(=O)c3c(nccn3)O)C)C" # _pdbx_chem_comp_identifier.comp_id A1JGZ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(2~{Z},5~{R},6~{S},9~{S},10~{S},11~{R})-2-butan-2-ylidene-5,11-dimethyl-10-oxidanyl-3,7,12-tris(oxidanylidene)-9-(pyridin-3-ylmethyl)-1,4-dioxa-8-azacyclododec-6-yl]-3-oxidanyl-pyrazine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JGZ "Create component" 2025-06-16 PDBE A1JGZ "Initial release" 2026-02-11 RCSB #