data_A1JHR # _chem_comp.id A1JHR _chem_comp.name Gly-Ser-epsilon-Lys _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H22 N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2S)-2-azanyl-6-[[(2S)-2-(2-azanylethanoylamino)-3-oxidanyl-propanoyl]amino]hexanoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-06-19 _chem_comp.pdbx_modified_date 2025-08-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 290.316 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JHR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RD1 _chem_comp.pdbx_subcomponent_list "GLY SER LYS" _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JHR N N1 N 0 1 N N N N N N -8.257 -47.885 -35.856 7.784 0.983 0.085 N GLY 1 A1JHR CA C3 C 0 1 N N N N N N -6.844 -48.101 -35.670 6.635 0.438 0.820 CA GLY 2 A1JHR C C4 C 0 1 N N N N N N -6.658 -48.929 -34.457 5.418 0.449 -0.069 C GLY 3 A1JHR O O1 O 0 1 N N N N N N -7.464 -48.918 -33.562 5.501 0.870 -1.204 O GLY 4 A1JHR N1 N2 N 0 1 N N N N N N -5.597 -49.686 -34.495 4.239 -0.007 0.396 N SER 5 A1JHR CA1 C5 C 0 1 N N S N N N -5.161 -50.495 -33.389 3.056 0.004 -0.469 CA SER 6 A1JHR C1 C1 C 0 1 N N N N N N -4.454 -49.491 -32.497 1.813 0.049 0.381 C SER 7 A1JHR O1 O2 O 0 1 N N N N N N -3.547 -48.850 -32.925 1.905 0.071 1.590 O SER 8 A1JHR CB C6 C 0 1 N N N N N N -4.190 -51.574 -33.825 3.041 -1.263 -1.328 CB SER 9 A1JHR OG O3 O 0 1 N N N N N N -4.822 -52.841 -33.983 2.884 -2.407 -0.486 OG SER 10 A1JHR N2 N3 N 0 1 N N N N N N 0.302 -48.390 -28.535 -5.709 -1.012 1.327 N LYS 11 A1JHR CA2 C7 C 0 1 N N S N N N -1.085 -48.258 -28.076 -5.606 0.226 0.544 CA LYS 12 A1JHR C2 C2 C 0 1 N N N N N N -1.386 -49.170 -26.886 -6.816 0.361 -0.344 C LYS 13 A1JHR O2 O4 O 0 1 N N N N N N -1.108 -50.348 -26.948 -7.484 -0.612 -0.608 O LYS 14 A1JHR CB1 C8 C 0 1 N N N N N N -2.063 -48.419 -29.233 -4.343 0.179 -0.319 CB LYS 15 A1JHR CG C9 C 0 1 N N N N N N -2.933 -49.643 -29.111 -3.108 0.168 0.584 CG LYS 16 A1JHR CD C10 C 0 1 N N N N N N -4.363 -49.222 -29.067 -1.846 0.122 -0.279 CD LYS 17 A1JHR CE C11 C 0 1 N N N N N N -4.635 -48.402 -30.278 -0.611 0.111 0.624 CE LYS 18 A1JHR NZ N4 N 0 1 N N N N N N -5.043 -49.286 -31.335 0.598 0.066 -0.202 NZ LYS 19 A1JHR OXT O5 O 0 1 N N N N N N -1.861 -48.645 -25.889 -7.153 1.561 -0.842 OXT LYS 20 A1JHR H1 H1 H 0 1 N N N N N N -8.405 -47.326 -36.672 8.613 0.986 0.660 H GLY 21 A1JHR H2 H2 H 0 1 N N N N N N -8.717 -48.766 -35.967 7.940 0.472 -0.771 H2 GLY 22 A1JHR H4 H4 H 0 1 N N N N N N -6.429 -48.623 -36.545 6.851 -0.585 1.127 HA2 GLY 23 A1JHR H5 H5 H 0 1 N N N N N N -6.333 -47.135 -35.543 6.445 1.050 1.702 HA3 GLY 24 A1JHR H6 H6 H 0 1 N N N N N N -5.058 -49.705 -35.337 4.173 -0.343 1.304 H SER 25 A1JHR H7 H7 H 0 1 N N N N N N -6.014 -50.942 -32.857 3.087 0.881 -1.115 HA SER 26 A1JHR H8 H8 H 0 1 N N N N N N -3.399 -51.666 -33.066 2.211 -1.213 -2.033 HB2 SER 27 A1JHR H9 H9 H 0 1 N N N N N N -3.743 -51.280 -34.786 3.980 -1.341 -1.876 HB3 SER 28 A1JHR H10 H10 H 0 1 N N N N N N -4.179 -53.484 -34.256 2.865 -3.247 -0.965 HG SER 29 A1JHR H11 H11 H 0 1 N N N N N N 0.922 -48.281 -27.758 -6.500 -0.979 1.953 H LYS 30 A1JHR H12 H12 H 0 1 N N N N N N 0.434 -49.294 -28.942 -5.759 -1.819 0.724 H2 LYS 31 A1JHR H14 H14 H 0 1 N N N N N N -1.205 -47.227 -27.711 -5.553 1.080 1.219 HA LYS 32 A1JHR H15 H15 H 0 1 N N N N N N -1.489 -48.491 -30.168 -4.354 -0.723 -0.931 HB2 LYS 33 A1JHR H16 H16 H 0 1 N N N N N N -2.712 -47.531 -29.268 -4.313 1.057 -0.966 HB3 LYS 34 A1JHR H17 H17 H 0 1 N N N N N N -2.769 -50.300 -29.978 -3.097 1.070 1.196 HG2 LYS 35 A1JHR H18 H18 H 0 1 N N N N N N -2.680 -50.185 -28.188 -3.139 -0.709 1.230 HG3 LYS 36 A1JHR H19 H19 H 0 1 N N N N N N -4.549 -48.625 -28.162 -1.857 -0.780 -0.891 HD2 LYS 37 A1JHR H20 H20 H 0 1 N N N N N N -5.014 -50.109 -29.062 -1.815 0.999 -0.926 HD3 LYS 38 A1JHR H21 H21 H 0 1 N N N N N N -3.724 -47.862 -30.575 -0.600 1.013 1.236 HE2 LYS 39 A1JHR H22 H22 H 0 1 N N N N N N -5.437 -47.679 -30.066 -0.641 -0.767 1.270 HE3 LYS 40 A1JHR H23 H23 H 0 1 N N N N N N -5.878 -49.811 -31.169 0.524 0.049 -1.169 HZ2 LYS 41 A1JHR H24 H24 H 0 1 N N N N N N -1.967 -49.298 -25.207 -7.937 1.598 -1.406 HXT LYS 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JHR N CA SING N N 1 A1JHR CA C SING N N 2 A1JHR N1 C SING N N 3 A1JHR N1 CA1 SING N N 4 A1JHR C O DOUB N N 5 A1JHR OG CB SING N N 6 A1JHR CB CA1 SING N N 7 A1JHR CA1 C1 SING N N 8 A1JHR O1 C1 DOUB N N 9 A1JHR C1 NZ SING N N 10 A1JHR NZ CE SING N N 11 A1JHR CE CD SING N N 12 A1JHR CB1 CG SING N N 13 A1JHR CB1 CA2 SING N N 14 A1JHR CG CD SING N N 15 A1JHR N2 CA2 SING N N 16 A1JHR CA2 C2 SING N N 17 A1JHR O2 C2 DOUB N N 18 A1JHR C2 OXT SING N N 19 A1JHR N H1 SING N N 20 A1JHR N H2 SING N N 21 A1JHR CA H4 SING N N 22 A1JHR CA H5 SING N N 23 A1JHR N1 H6 SING N N 24 A1JHR CA1 H7 SING N N 25 A1JHR CB H8 SING N N 26 A1JHR CB H9 SING N N 27 A1JHR OG H10 SING N N 28 A1JHR N2 H11 SING N N 29 A1JHR N2 H12 SING N N 30 A1JHR CA2 H14 SING N N 31 A1JHR CB1 H15 SING N N 32 A1JHR CB1 H16 SING N N 33 A1JHR CG H17 SING N N 34 A1JHR CG H18 SING N N 35 A1JHR CD H19 SING N N 36 A1JHR CD H20 SING N N 37 A1JHR CE H21 SING N N 38 A1JHR CE H22 SING N N 39 A1JHR NZ H23 SING N N 40 A1JHR OXT H24 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JHR InChI InChI 1.06 "InChI=1S/C11H22N4O5/c12-5-9(17)15-8(6-16)10(18)14-4-2-1-3-7(13)11(19)20/h7-8,16H,1-6,12-13H2,(H,14,18)(H,15,17)(H,19,20)/t7-,8-/m0/s1" A1JHR InChIKey InChI 1.06 OXZXXPSZOGBIGZ-YUMQZZPRSA-N A1JHR SMILES_CANONICAL CACTVS 3.385 "NCC(=O)N[C@@H](CO)C(=O)NCCCC[C@H](N)C(O)=O" A1JHR SMILES CACTVS 3.385 "NCC(=O)N[CH](CO)C(=O)NCCCC[CH](N)C(O)=O" A1JHR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CCNC(=O)[C@H](CO)NC(=O)CN)C[C@@H](C(=O)O)N" A1JHR SMILES "OpenEye OEToolkits" 2.0.7 "C(CCNC(=O)C(CO)NC(=O)CN)CC(C(=O)O)N" # _pdbx_chem_comp_identifier.comp_id A1JHR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-6-[[(2~{S})-2-(2-azanylethanoylamino)-3-oxidanyl-propanoyl]amino]hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JHR "Create component" 2025-06-19 PDBE A1JHR "Initial release" 2025-08-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1JHR _pdbx_chem_comp_synonyms.name "(2S)-2-azanyl-6-[[(2S)-2-(2-azanylethanoylamino)-3-oxidanyl-propanoyl]amino]hexanoic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #