data_A1JI8 # _chem_comp.id A1JI8 _chem_comp.name "4-[[[4-[(4,4-dimethylpiperidin-1-yl)methyl]-2-oxidanyl-phenyl]amino]methyl]-1-[6-[(phenylmethyl)amino]pyrimidin-4-yl]piperidin-4-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H42 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-06-30 _chem_comp.pdbx_modified_date 2026-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 530.704 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JI8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RS1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JI8 C10 C1 C 0 1 Y N N N N N -13.054 12.455 -2.216 -3.631 0.358 1.683 C10 A1JI8 1 A1JI8 C17 C2 C 0 1 N N N N N N -15.438 14.052 -5.419 0.445 -0.912 0.924 C17 A1JI8 2 A1JI8 C20 C3 C 0 1 N N N N N N -15.934 12.607 -5.513 0.535 -1.125 -0.590 C20 A1JI8 3 A1JI8 C21 C4 C 0 1 N N N N N N -17.086 12.488 -6.471 1.914 -1.686 -0.941 C21 A1JI8 4 A1JI8 C01 C5 C 0 1 N N N N N N -13.755 7.073 3.545 -10.759 0.539 -1.458 C01 A1JI8 5 A1JI8 C02 C6 C 0 1 N N N N N N -13.045 6.933 2.196 -9.698 1.630 -1.617 C02 A1JI8 6 A1JI8 C03 C7 C 0 1 N N N N N N -12.917 5.451 1.840 -10.058 2.524 -2.805 C03 A1JI8 7 A1JI8 C04 C8 C 0 1 N N N N N N -13.866 7.646 1.125 -9.636 2.473 -0.340 C04 A1JI8 8 A1JI8 C05 C9 C 0 1 N N N N N N -13.736 9.178 1.279 -9.216 1.584 0.833 C05 A1JI8 9 A1JI8 C07 C10 C 0 1 N N N N N N -12.390 10.930 1.243 -7.405 0.242 1.715 C07 A1JI8 10 A1JI8 C08 C11 C 0 1 Y N N N N N -13.073 11.671 0.079 -5.966 -0.143 1.486 C08 A1JI8 11 A1JI8 C09 C12 C 0 1 Y N N N N N -12.441 11.783 -1.158 -4.953 0.706 1.890 C09 A1JI8 12 A1JI8 C11 C13 C 0 1 Y N N N N N -14.320 12.256 0.257 -5.663 -1.345 0.873 C11 A1JI8 13 A1JI8 C12 C14 C 0 1 Y N N N N N -14.931 12.917 -0.785 -4.342 -1.704 0.666 C12 A1JI8 14 A1JI8 C14 C15 C 0 1 Y N N N N N -14.304 13.022 -2.019 -3.320 -0.846 1.068 C14 A1JI8 15 A1JI8 C16 C16 C 0 1 N N N N N N -14.378 14.147 -4.317 -0.910 -0.294 1.275 C16 A1JI8 16 A1JI8 C18 C17 C 0 1 N N N N N N -16.618 15.001 -5.054 1.568 0.032 1.366 C18 A1JI8 17 A1JI8 C19 C18 C 0 1 N N N N N N -17.805 14.805 -6.030 2.918 -0.563 0.958 C19 A1JI8 18 A1JI8 C23 C19 C 0 1 Y N N N N N -19.469 12.980 -6.043 4.208 -1.161 -0.916 C23 A1JI8 19 A1JI8 C25 C20 C 0 1 Y N N N N N -21.663 13.421 -5.463 5.537 -2.677 -2.034 C25 A1JI8 20 A1JI8 C27 C21 C 0 1 Y N N N N N -21.104 11.326 -6.300 6.575 -0.869 -1.051 C27 A1JI8 21 A1JI8 C29 C22 C 0 1 N N N N N N -22.910 9.669 -6.682 7.658 1.079 0.012 C29 A1JI8 22 A1JI8 C30 C23 C 0 1 Y N N N N N -23.355 9.273 -8.084 9.043 1.649 0.181 C30 A1JI8 23 A1JI8 C31 C24 C 0 1 Y N N N N N -24.325 8.292 -8.251 9.815 1.280 1.266 C31 A1JI8 24 A1JI8 C32 C25 C 0 1 Y N N N N N -24.744 7.927 -9.512 11.085 1.803 1.421 C32 A1JI8 25 A1JI8 C33 C26 C 0 1 Y N N N N N -24.178 8.552 -10.603 11.583 2.695 0.490 C33 A1JI8 26 A1JI8 C34 C27 C 0 1 Y N N N N N -23.210 9.536 -10.442 10.811 3.064 -0.595 C34 A1JI8 27 A1JI8 C35 C28 C 0 1 Y N N N N N -22.790 9.903 -9.177 9.543 2.538 -0.753 C35 A1JI8 28 A1JI8 C36 C29 C 0 1 Y N N N N N -19.818 11.721 -6.413 5.339 -0.414 -0.604 C36 A1JI8 29 A1JI8 C38 C30 C 0 1 N N N N N N -11.740 9.097 2.202 -7.949 0.138 -0.642 C38 A1JI8 30 A1JI8 C39 C31 C 0 1 N N N N N N -11.668 7.572 2.252 -8.331 0.983 -1.859 C39 A1JI8 31 A1JI8 N06 N1 N 0 1 N N N N N N -12.480 9.602 1.218 -7.903 0.990 0.553 N06 A1JI8 32 A1JI8 N15 N2 N 0 1 N N N N N N -15.012 13.744 -3.066 -1.982 -1.198 0.852 N15 A1JI8 33 A1JI8 N22 N3 N 0 1 N N N N N N -18.097 13.413 -6.174 2.953 -0.747 -0.498 N22 A1JI8 34 A1JI8 N24 N4 N 0 1 Y N N N N N -20.378 13.819 -5.582 4.349 -2.279 -1.628 N24 A1JI8 35 A1JI8 N26 N5 N 0 1 Y N N N N N -22.012 12.159 -5.829 6.631 -1.997 -1.758 N26 A1JI8 36 A1JI8 N28 N6 N 0 1 N N N N N N -21.500 9.983 -6.691 7.732 -0.160 -0.766 N28 A1JI8 37 A1JI8 O13 O1 O 0 1 N N N N N N -16.190 13.513 -0.650 -4.042 -2.886 0.063 O13 A1JI8 38 A1JI8 O37 O2 O 0 1 N N N N N N -14.903 14.452 -6.629 0.586 -2.168 1.592 O37 A1JI8 39 A1JI8 H101 H1 H 0 0 N N N N N N -12.562 12.532 -3.174 -2.842 1.025 1.996 H101 A1JI8 40 A1JI8 H201 H2 H 0 0 N N N N N N -15.110 11.967 -5.862 -0.235 -1.829 -0.904 H201 A1JI8 41 A1JI8 H202 H3 H 0 0 N N N N N N -16.260 12.274 -4.517 0.388 -0.173 -1.100 H202 A1JI8 42 A1JI8 H211 H4 H 0 0 N N N N N N -16.722 12.672 -7.493 2.055 -2.644 -0.441 H211 A1JI8 43 A1JI8 H212 H5 H 0 0 N N N N N N -17.501 11.471 -6.407 1.986 -1.825 -2.019 H212 A1JI8 44 A1JI8 H011 H6 H 0 0 N N N N N N -14.749 6.606 3.487 -10.502 -0.096 -0.610 H011 A1JI8 45 A1JI8 H012 H7 H 0 0 N N N N N N -13.161 6.575 4.325 -11.731 1.000 -1.285 H012 A1JI8 46 A1JI8 H013 H8 H 0 0 N N N N N N -13.865 8.139 3.792 -10.798 -0.065 -2.365 H013 A1JI8 47 A1JI8 H031 H9 H 0 0 N N N N N N -12.407 5.349 0.871 -11.030 2.985 -2.631 H031 A1JI8 48 A1JI8 H032 H10 H 0 0 N N N N N N -12.333 4.936 2.617 -9.302 3.301 -2.918 H032 A1JI8 49 A1JI8 H033 H11 H 0 0 N N N N N N -13.919 5.002 1.776 -10.099 1.922 -3.713 H033 A1JI8 50 A1JI8 H041 H12 H 0 0 N N N N N N -13.501 7.349 0.131 -8.908 3.274 -0.469 H041 A1JI8 51 A1JI8 H042 H13 H 0 0 N N N N N N -14.923 7.360 1.228 -10.618 2.902 -0.139 H042 A1JI8 52 A1JI8 H051 H14 H 0 0 N N N N N N -14.308 9.661 0.473 -9.157 2.185 1.740 H051 A1JI8 53 A1JI8 H052 H15 H 0 0 N N N N N N -14.157 9.469 2.253 -9.952 0.792 0.969 H052 A1JI8 54 A1JI8 H071 H16 H 0 0 N N N N N N -12.846 11.281 2.180 -8.005 -0.659 1.851 H071 A1JI8 55 A1JI8 H072 H17 H 0 0 N N N N N N -11.323 11.196 1.232 -7.477 0.864 2.606 H072 A1JI8 56 A1JI8 H091 H18 H 0 0 N N N N N N -11.464 11.344 -1.299 -5.195 1.643 2.368 H091 A1JI8 57 A1JI8 H111 H19 H 0 0 N N N N N N -14.812 12.192 1.216 -6.457 -2.007 0.559 H111 A1JI8 58 A1JI8 H161 H20 H 0 0 N N N N N N -14.011 15.181 -4.237 -0.970 -0.138 2.352 H161 A1JI8 59 A1JI8 H162 H21 H 0 0 N N N N N N -13.537 13.476 -4.545 -1.017 0.662 0.762 H162 A1JI8 60 A1JI8 H181 H22 H 0 0 N N N N N N -16.954 14.781 -4.030 1.438 1.002 0.886 H181 A1JI8 61 A1JI8 H182 H23 H 0 0 N N N N N N -16.273 16.044 -5.111 1.536 0.153 2.449 H182 A1JI8 62 A1JI8 H191 H24 H 0 0 N N N N N N -18.691 15.324 -5.635 3.718 0.113 1.259 H191 A1JI8 63 A1JI8 H192 H25 H 0 0 N N N N N N -17.542 15.225 -7.012 3.053 -1.527 1.449 H192 A1JI8 64 A1JI8 H251 H26 H 0 0 N N N N N N -22.409 14.101 -5.079 5.616 -3.588 -2.609 H251 A1JI8 65 A1JI8 H291 H27 H 0 0 N N N N N N -23.095 8.834 -5.990 7.230 0.867 0.992 H291 A1JI8 66 A1JI8 H292 H28 H 0 0 N N N N N N -23.479 10.551 -6.353 7.029 1.800 -0.511 H292 A1JI8 67 A1JI8 H311 H29 H 0 0 N N N N N N -24.754 7.811 -7.384 9.426 0.582 1.993 H311 A1JI8 68 A1JI8 H321 H30 H 0 0 N N N N N N -25.500 7.167 -9.643 11.688 1.514 2.269 H321 A1JI8 69 A1JI8 H331 H31 H 0 0 N N N N N N -24.492 8.273 -11.598 12.575 3.105 0.612 H331 A1JI8 70 A1JI8 H341 H32 H 0 0 N N N N N N -22.783 10.017 -11.310 11.200 3.762 -1.322 H341 A1JI8 71 A1JI8 H351 H33 H 0 0 N N N N N N -22.037 10.666 -9.046 8.941 2.823 -1.603 H351 A1JI8 72 A1JI8 H361 H34 H 0 0 N N N N N N -19.072 11.040 -6.795 5.259 0.497 -0.029 H361 A1JI8 73 A1JI8 H381 H35 H 0 0 N N N N N N -10.716 9.481 2.088 -8.691 -0.648 -0.499 H381 A1JI8 74 A1JI8 H382 H36 H 0 0 N N N N N N -12.159 9.448 3.156 -6.970 -0.312 -0.805 H382 A1JI8 75 A1JI8 H391 H37 H 0 0 N N N N N N -11.175 7.271 3.188 -8.381 0.347 -2.743 H391 A1JI8 76 A1JI8 H392 H38 H 0 0 N N N N N N -11.077 7.216 1.395 -7.582 1.761 -2.011 H392 A1JI8 77 A1JI8 H151 H40 H 0 0 N N N N N N -15.788 13.168 -3.323 -1.766 -2.040 0.422 H151 A1JI8 78 A1JI8 H281 H41 H 0 0 N N N N N N -21.166 9.832 -7.622 8.590 -0.484 -1.082 H281 A1JI8 79 A1JI8 H131 H42 H 0 0 N N N N N N -16.440 13.916 -1.473 -3.971 -2.829 -0.899 H131 A1JI8 80 A1JI8 H371 H43 H 0 0 N N N N N N -15.567 14.390 -7.305 -0.093 -2.815 1.359 H371 A1JI8 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JI8 C01 C02 SING N N 1 A1JI8 C02 C39 SING N N 2 A1JI8 C02 C03 SING N N 3 A1JI8 C02 C04 SING N N 4 A1JI8 C04 C05 SING N N 5 A1JI8 C05 N06 SING N N 6 A1JI8 N06 C07 SING N N 7 A1JI8 N06 C38 SING N N 8 A1JI8 C07 C08 SING N N 9 A1JI8 C08 C09 DOUB Y N 10 A1JI8 C08 C11 SING Y N 11 A1JI8 C09 C10 SING Y N 12 A1JI8 C10 C14 DOUB Y N 13 A1JI8 C11 C12 DOUB Y N 14 A1JI8 C12 O13 SING N N 15 A1JI8 C12 C14 SING Y N 16 A1JI8 C14 N15 SING N N 17 A1JI8 N15 C16 SING N N 18 A1JI8 C16 C17 SING N N 19 A1JI8 C17 C18 SING N N 20 A1JI8 C17 C20 SING N N 21 A1JI8 C17 O37 SING N N 22 A1JI8 C18 C19 SING N N 23 A1JI8 C19 N22 SING N N 24 A1JI8 C20 C21 SING N N 25 A1JI8 C21 N22 SING N N 26 A1JI8 N22 C23 SING N N 27 A1JI8 C23 C36 DOUB Y N 28 A1JI8 C23 N24 SING Y N 29 A1JI8 N24 C25 DOUB Y N 30 A1JI8 C25 N26 SING Y N 31 A1JI8 N26 C27 DOUB Y N 32 A1JI8 C27 N28 SING N N 33 A1JI8 C27 C36 SING Y N 34 A1JI8 N28 C29 SING N N 35 A1JI8 C29 C30 SING N N 36 A1JI8 C30 C35 DOUB Y N 37 A1JI8 C30 C31 SING Y N 38 A1JI8 C31 C32 DOUB Y N 39 A1JI8 C32 C33 SING Y N 40 A1JI8 C33 C34 DOUB Y N 41 A1JI8 C34 C35 SING Y N 42 A1JI8 C38 C39 SING N N 43 A1JI8 C10 H101 SING N N 44 A1JI8 C20 H201 SING N N 45 A1JI8 C20 H202 SING N N 46 A1JI8 C21 H211 SING N N 47 A1JI8 C21 H212 SING N N 48 A1JI8 C01 H011 SING N N 49 A1JI8 C01 H012 SING N N 50 A1JI8 C01 H013 SING N N 51 A1JI8 C03 H031 SING N N 52 A1JI8 C03 H032 SING N N 53 A1JI8 C03 H033 SING N N 54 A1JI8 C04 H041 SING N N 55 A1JI8 C04 H042 SING N N 56 A1JI8 C05 H051 SING N N 57 A1JI8 C05 H052 SING N N 58 A1JI8 C07 H071 SING N N 59 A1JI8 C07 H072 SING N N 60 A1JI8 C09 H091 SING N N 61 A1JI8 C11 H111 SING N N 62 A1JI8 C16 H161 SING N N 63 A1JI8 C16 H162 SING N N 64 A1JI8 C18 H181 SING N N 65 A1JI8 C18 H182 SING N N 66 A1JI8 C19 H191 SING N N 67 A1JI8 C19 H192 SING N N 68 A1JI8 C25 H251 SING N N 69 A1JI8 C29 H291 SING N N 70 A1JI8 C29 H292 SING N N 71 A1JI8 C31 H311 SING N N 72 A1JI8 C32 H321 SING N N 73 A1JI8 C33 H331 SING N N 74 A1JI8 C34 H341 SING N N 75 A1JI8 C35 H351 SING N N 76 A1JI8 C36 H361 SING N N 77 A1JI8 C38 H381 SING N N 78 A1JI8 C38 H382 SING N N 79 A1JI8 C39 H391 SING N N 80 A1JI8 C39 H392 SING N N 81 A1JI8 N15 H151 SING N N 82 A1JI8 N28 H281 SING N N 83 A1JI8 O13 H131 SING N N 84 A1JI8 O37 H371 SING N N 85 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JI8 InChI InChI 1.06 "InChI=1S/C31H42N6O2/c1-30(2)10-14-36(15-11-30)21-25-8-9-26(27(38)18-25)33-22-31(39)12-16-37(17-13-31)29-19-28(34-23-35-29)32-20-24-6-4-3-5-7-24/h3-9,18-19,23,33,38-39H,10-17,20-22H2,1-2H3,(H,32,34,35)" A1JI8 InChIKey InChI 1.06 LGMWZDAECPCPJC-UHFFFAOYSA-N A1JI8 SMILES_CANONICAL CACTVS 3.385 "CC1(C)CCN(CC1)Cc2ccc(NCC3(O)CCN(CC3)c4cc(NCc5ccccc5)ncn4)c(O)c2" A1JI8 SMILES CACTVS 3.385 "CC1(C)CCN(CC1)Cc2ccc(NCC3(O)CCN(CC3)c4cc(NCc5ccccc5)ncn4)c(O)c2" A1JI8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1(CCN(CC1)Cc2ccc(c(c2)O)NCC3(CCN(CC3)c4cc(ncn4)NCc5ccccc5)O)C" A1JI8 SMILES "OpenEye OEToolkits" 2.0.7 "CC1(CCN(CC1)Cc2ccc(c(c2)O)NCC3(CCN(CC3)c4cc(ncn4)NCc5ccccc5)O)C" # _pdbx_chem_comp_identifier.comp_id A1JI8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[[[4-[(4,4-dimethylpiperidin-1-yl)methyl]-2-oxidanyl-phenyl]amino]methyl]-1-[6-[(phenylmethyl)amino]pyrimidin-4-yl]piperidin-4-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JI8 "Create component" 2025-06-30 PDBE A1JI8 "Initial release" 2026-03-18 RCSB #