data_A1JII # _chem_comp.id A1JII _chem_comp.name "~{N}-ethyl-2-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,5-bis(oxidanyl)-4-[4-[3,4,5-tris(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxan-2-yl]sulfanyl-~{N}-methyl-ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H23 F3 N4 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-06-27 _chem_comp.pdbx_modified_date 2026-07-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 476.470 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JII _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RQX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JII N3 N1 N 0 1 N N N N N N -23.633 8.661 -4.512 -7.072 1.529 -0.340 N3 A1JII 1 A1JII C4 C1 C 0 1 N N N N N N -23.714 8.043 -5.829 -7.701 0.207 -0.397 C4 A1JII 2 A1JII C5 C2 C 0 1 N N N N N N -22.623 9.509 -4.225 -5.729 1.639 -0.375 C5 A1JII 3 A1JII C6 C3 C 0 1 N N N N N N -22.582 10.135 -2.843 -4.874 0.403 -0.473 C6 A1JII 4 A1JII C8 C4 C 0 1 N N S N N N -19.997 9.166 -2.428 -2.269 -0.718 -0.619 C8 A1JII 5 A1JII C10 C5 C 0 1 N N S N N N -17.812 8.076 -2.343 -0.045 -1.832 -0.818 C10 A1JII 6 A1JII N12 N2 N 0 1 Y N N N N N -15.548 7.787 -3.161 2.240 -2.349 -1.537 N12 A1JII 7 A1JII C15 C6 C 0 1 Y N N N N N -13.128 8.818 -0.741 4.541 0.060 -0.228 C15 A1JII 8 A1JII C17 C7 C 0 1 Y N N N N N -12.012 9.177 1.325 6.896 0.535 -0.278 C17 A1JII 9 A1JII C20 C8 C 0 1 Y N N N N N -10.783 9.212 -0.690 5.405 1.969 0.946 C20 A1JII 10 A1JII C22 C9 C 0 1 Y N N N N N -10.813 9.317 0.679 6.685 1.649 0.521 C22 A1JII 11 A1JII C24 C10 C 0 1 Y N N N N N -15.664 8.628 -1.112 2.082 -0.606 -0.302 C24 A1JII 12 A1JII C28 C11 C 0 1 N N N N N N -20.559 6.027 -0.620 -2.243 -3.496 1.868 C28 A1JII 13 A1JII C1 C12 C 0 1 N N N N N N -25.934 9.205 -3.704 -8.155 3.070 1.221 C1 A1JII 14 A1JII C2 C13 C 0 1 N N N N N N -24.727 8.292 -3.606 -7.904 2.732 -0.250 C2 A1JII 15 A1JII S7 S1 S 0 1 N N N N N N -20.935 10.702 -2.361 -3.124 0.878 -0.500 S7 A1JII 16 A1JII C9 C14 C 0 1 N N R N N N -18.498 9.429 -2.211 -0.765 -0.481 -0.779 C9 A1JII 17 A1JII N11 N3 N 0 1 Y N N N N N -16.369 8.180 -2.172 1.402 -1.614 -0.895 N11 A1JII 18 A1JII N13 N4 N 0 1 Y N N N N N -14.320 7.987 -2.744 3.434 -1.889 -1.406 N13 A1JII 19 A1JII C14 C15 C 0 1 Y N N N N N -14.352 8.509 -1.482 3.392 -0.788 -0.635 C14 A1JII 20 A1JII C16 C16 C 0 1 Y N N N N N -13.166 8.901 0.648 5.829 -0.259 -0.654 C16 A1JII 21 A1JII F18 F1 F 0 1 N N N N N N -12.033 9.286 2.671 8.145 0.227 -0.690 F18 A1JII 22 A1JII C19 C17 C 0 1 Y N N N N N -11.916 8.950 -1.413 4.334 1.179 0.574 C19 A1JII 23 A1JII F21 F2 F 0 1 N N N N N N -9.591 9.350 -1.317 5.204 3.055 1.725 F21 A1JII 24 A1JII F23 F3 F 0 1 N N N N N N -9.696 9.573 1.367 7.730 2.424 0.886 F23 A1JII 25 A1JII O25 O1 O 0 1 N N N N N N -17.965 10.293 -3.215 -0.519 0.228 -1.995 O25 A1JII 26 A1JII O26 O2 O 0 1 N N N N N N -20.494 8.228 -1.471 -2.508 -1.476 0.568 O26 A1JII 27 A1JII C27 C18 C 0 1 N N R N N N -19.902 6.923 -1.627 -1.898 -2.768 0.567 C27 A1JII 28 A1JII O29 O3 O 0 1 N N N N N N -21.916 5.870 -0.919 -3.649 -3.742 1.918 O29 A1JII 29 A1JII C30 C19 C 0 1 N N R N N N -18.393 7.024 -1.394 -0.379 -2.614 0.456 C30 A1JII 30 A1JII O31 O4 O 0 1 N N N N N N -18.106 7.456 -0.058 0.114 -1.904 1.594 O31 A1JII 31 A1JII O32 O5 O 0 1 N N N N N N -21.773 9.805 -5.060 -5.209 2.734 -0.327 O32 A1JII 32 A1JII H4A H1 H 0 1 N N N N N N -22.861 8.371 -6.441 -7.825 -0.181 0.614 H4A A1JII 33 A1JII H4B H2 H 0 1 N N N N N N -23.690 6.948 -5.722 -8.676 0.289 -0.877 H4B A1JII 34 A1JII H4C H3 H 0 1 N N N N N N -24.653 8.343 -6.318 -7.069 -0.471 -0.971 H4C A1JII 35 A1JII H6A H4 H 0 1 N N N N N N -23.265 10.997 -2.830 -5.063 -0.240 0.387 H6A A1JII 36 A1JII H6B H5 H 0 1 N N N N N N -22.921 9.387 -2.111 -5.119 -0.136 -1.389 H6B A1JII 37 A1JII H8 H6 H 0 1 N N N N N N -20.139 8.774 -3.446 -2.644 -1.267 -1.483 H8 A1JII 38 A1JII H10 H7 H 0 1 N N N N N N -18.002 7.720 -3.366 -0.375 -2.396 -1.691 H10 A1JII 39 A1JII H24 H8 H 0 1 N N N N N N -16.051 9.000 -0.175 1.670 0.183 0.310 H24 A1JII 40 A1JII H28A H9 H 0 0 N N N N N N -20.068 5.043 -0.636 -1.706 -4.444 1.908 H28A A1JII 41 A1JII H28B H10 H 0 0 N N N N N N -20.458 6.471 0.381 -1.952 -2.879 2.718 H28B A1JII 42 A1JII H1A H11 H 0 1 N N N N N N -26.708 8.867 -2.999 -8.773 3.965 1.288 H1A A1JII 43 A1JII H1B H12 H 0 1 N N N N N N -25.636 10.234 -3.456 -8.667 2.237 1.703 H1B A1JII 44 A1JII H1C H13 H 0 1 N N N N N N -26.333 9.176 -4.729 -7.202 3.249 1.721 H1C A1JII 45 A1JII H2A H14 H 0 1 N N N N N N -24.349 8.326 -2.573 -7.391 3.565 -0.731 H2A A1JII 46 A1JII H2B H15 H 0 1 N N N N N N -25.046 7.267 -3.846 -8.856 2.554 -0.749 H2B A1JII 47 A1JII H9 H16 H 0 1 N N N N N N -18.334 9.837 -1.203 -0.397 0.104 0.065 H9 A1JII 48 A1JII H16 H17 H 0 1 N N N N N N -14.093 8.750 1.182 5.994 -1.127 -1.276 H16 A1JII 49 A1JII H19 H18 H 0 1 N N N N N N -11.870 8.847 -2.487 3.336 1.429 0.905 H19 A1JII 50 A1JII H25 H19 H 0 1 N N N N N N -17.040 10.435 -3.053 -0.950 1.092 -2.041 H25 A1JII 51 A1JII H27 H20 H 0 1 N N N N N N -20.086 6.537 -2.640 -2.268 -3.345 -0.281 H27 A1JII 52 A1JII H29 H21 H 0 1 N N N N N N -22.319 5.301 -0.274 -3.940 -4.202 2.717 H29 A1JII 53 A1JII H30 H22 H 0 1 N N N N N N -17.925 6.050 -1.598 0.086 -3.599 0.412 H30 A1JII 54 A1JII H31 H23 H 0 1 N N N N N N -17.165 7.511 0.062 -0.067 -2.340 2.438 H31 A1JII 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JII C1 C2 SING N N 1 A1JII C2 N3 SING N N 2 A1JII N3 C4 SING N N 3 A1JII N3 C5 SING N N 4 A1JII C5 C6 SING N N 5 A1JII C6 S7 SING N N 6 A1JII S7 C8 SING N N 7 A1JII C8 C9 SING N N 8 A1JII C9 C10 SING N N 9 A1JII C10 N11 SING N N 10 A1JII N11 N12 SING Y N 11 A1JII N12 N13 DOUB Y N 12 A1JII N13 C14 SING Y N 13 A1JII C14 C15 SING N N 14 A1JII C15 C16 DOUB Y N 15 A1JII C16 C17 SING Y N 16 A1JII C17 F18 SING N N 17 A1JII C15 C19 SING Y N 18 A1JII C19 C20 DOUB Y N 19 A1JII C20 F21 SING N N 20 A1JII C20 C22 SING Y N 21 A1JII C22 F23 SING N N 22 A1JII C14 C24 DOUB Y N 23 A1JII C9 O25 SING N N 24 A1JII C8 O26 SING N N 25 A1JII O26 C27 SING N N 26 A1JII C27 C28 SING N N 27 A1JII C28 O29 SING N N 28 A1JII C27 C30 SING N N 29 A1JII C30 O31 SING N N 30 A1JII C5 O32 DOUB N N 31 A1JII C30 C10 SING N N 32 A1JII C24 N11 SING Y N 33 A1JII C22 C17 DOUB Y N 34 A1JII C4 H4A SING N N 35 A1JII C4 H4B SING N N 36 A1JII C4 H4C SING N N 37 A1JII C6 H6A SING N N 38 A1JII C6 H6B SING N N 39 A1JII C8 H8 SING N N 40 A1JII C10 H10 SING N N 41 A1JII C24 H24 SING N N 42 A1JII C28 H28A SING N N 43 A1JII C28 H28B SING N N 44 A1JII C1 H1A SING N N 45 A1JII C1 H1B SING N N 46 A1JII C1 H1C SING N N 47 A1JII C2 H2A SING N N 48 A1JII C2 H2B SING N N 49 A1JII C9 H9 SING N N 50 A1JII C16 H16 SING N N 51 A1JII C19 H19 SING N N 52 A1JII O25 H25 SING N N 53 A1JII C27 H27 SING N N 54 A1JII O29 H29 SING N N 55 A1JII C30 H30 SING N N 56 A1JII O31 H31 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JII InChI InChI 1.06 "InChI=1S/C19H23F3N4O5S/c1-3-25(2)14(28)8-32-19-18(30)16(17(29)13(7-27)31-19)26-6-12(23-24-26)9-4-10(20)15(22)11(21)5-9/h4-6,13,16-19,27,29-30H,3,7-8H2,1-2H3/t13-,16+,17+,18-,19+/m1/s1" A1JII InChIKey InChI 1.06 NWEJEAPYTJKXHI-DTBDJWGBSA-N A1JII SMILES_CANONICAL CACTVS 3.385 "CCN(C)C(=O)CS[C@@H]1O[C@H](CO)[C@H](O)[C@@H]([C@H]1O)n2cc(nn2)c3cc(F)c(F)c(F)c3" A1JII SMILES CACTVS 3.385 "CCN(C)C(=O)CS[CH]1O[CH](CO)[CH](O)[CH]([CH]1O)n2cc(nn2)c3cc(F)c(F)c(F)c3" A1JII SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCN(C)C(=O)CS[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)n2cc(nn2)c3cc(c(c(c3)F)F)F)O" A1JII SMILES "OpenEye OEToolkits" 2.0.7 "CCN(C)C(=O)CSC1C(C(C(C(O1)CO)O)n2cc(nn2)c3cc(c(c(c3)F)F)F)O" # _pdbx_chem_comp_identifier.comp_id A1JII _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-ethyl-2-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,5-bis(oxidanyl)-4-[4-[3,4,5-tris(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxan-2-yl]sulfanyl-~{N}-methyl-ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JII "Create component" 2025-06-27 PDBE A1JII "Initial release" 2026-07-08 RCSB #