data_A1JIM # _chem_comp.id A1JIM _chem_comp.name "(2~{S})-1-(azetidin-1-yl)-2-[4,4-bis(fluoranyl)-1-oxidanyl-cyclohexyl]-2-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,5-bis(oxidanyl)-4-[4-[3,4,5-tris(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxan-2-yl]sulfanyl-ethanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H29 F5 N4 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-06-27 _chem_comp.pdbx_modified_date 2026-07-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 608.578 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JIM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RR1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JIM N1 N1 N 0 1 N N N N N N -23.038 9.303 -3.288 -5.039 1.887 1.047 N1 A1JIM 1 A1JIM N3 N2 N 0 1 Y N N N N N -15.507 8.410 -1.647 2.681 1.873 0.572 N3 A1JIM 2 A1JIM C4 C1 C 0 1 N N S N N N -16.968 8.246 -1.814 1.257 2.152 0.370 C4 A1JIM 3 A1JIM C5 C2 C 0 1 N N S N N N -21.728 10.169 -1.248 -3.664 0.138 -0.034 C5 A1JIM 4 A1JIM C6 C3 C 0 1 N N N N N N -22.273 10.367 -2.662 -4.076 0.951 1.166 C6 A1JIM 5 A1JIM C8 C4 C 0 1 Y N N N N N -12.254 8.890 -0.220 5.757 -0.019 0.317 C8 A1JIM 6 A1JIM C10 C5 C 0 1 Y N N N N N -11.044 9.033 -0.888 5.537 -1.212 -0.368 C10 A1JIM 7 A1JIM C13 C6 C 0 1 Y N N N N N -14.775 8.714 -0.592 3.338 0.770 0.147 C13 A1JIM 8 A1JIM C17 C7 C 0 1 N N N N N N -22.624 12.251 -0.032 -4.167 -1.900 -1.388 C17 A1JIM 9 A1JIM C20 C8 C 0 1 N N N N N N -25.090 10.780 0.716 -5.387 -3.158 0.960 C20 A1JIM 10 A1JIM C21 C9 C 0 1 N N N N N N -24.994 12.302 0.873 -4.972 -3.980 -0.262 C21 A1JIM 11 A1JIM C24 C10 C 0 1 N N N N N N -22.833 7.896 -4.686 -6.933 2.763 0.970 C24 A1JIM 12 A1JIM "O3'" O1 O 0 1 N N N N N N -21.021 5.814 -0.448 -2.052 3.886 -2.819 "O3'" A1JIM 13 A1JIM "C3'" C11 C 0 1 N N N N N N -19.617 5.930 -0.184 -0.668 3.576 -2.643 "C3'" A1JIM 14 A1JIM "C2'" C12 C 0 1 N N R N N N -19.009 7.015 -1.086 -0.448 3.000 -1.243 "C2'" A1JIM 15 A1JIM "C1'" C13 C 0 1 N N R N N N -17.494 7.114 -0.906 1.050 2.784 -1.009 "C1'" A1JIM 16 A1JIM "C5'" C14 C 0 1 N N R N N N -17.698 9.555 -1.511 0.463 0.845 0.446 "C5'" A1JIM 17 A1JIM "O5'" O2 O 0 1 N N N N N N -17.229 10.584 -2.425 0.591 0.282 1.753 "O5'" A1JIM 18 A1JIM NAA N3 N 0 1 Y N N N N N -14.753 8.055 -2.660 3.519 2.638 1.179 NAA A1JIM 19 A1JIM N2 N4 N 0 1 Y N N N N N -13.497 8.200 -2.297 4.690 2.106 1.187 N2 A1JIM 20 A1JIM CAA C15 C 0 1 Y N N N N N -13.472 8.632 -1.020 4.635 0.927 0.543 CAA A1JIM 21 A1JIM CAB C16 C 0 1 Y N N N N N -12.308 8.890 1.174 7.030 0.282 0.794 CAB A1JIM 22 A1JIM C9 C17 C 0 1 Y N N N N N -11.135 9.092 1.877 8.071 -0.604 0.587 C9 A1JIM 23 A1JIM F1 F1 F 0 1 N N N N N N -11.122 9.043 3.257 9.307 -0.312 1.049 F1 A1JIM 24 A1JIM C11 C18 C 0 1 Y N N N N N -9.883 9.209 -0.162 6.582 -2.093 -0.572 C11 A1JIM 25 A1JIM F2 F2 F 0 1 N N N N N N -8.643 9.337 -0.782 6.370 -3.250 -1.237 F2 A1JIM 26 A1JIM C12 C19 C 0 1 Y N N N N N -9.936 9.218 1.216 7.849 -1.790 -0.095 C12 A1JIM 27 A1JIM F3 F3 F 0 1 N N N N N N -8.771 9.375 1.929 8.868 -2.654 -0.296 F3 A1JIM 28 A1JIM "O4'" O3 O 0 1 N N N N N N -17.190 7.388 0.491 1.570 1.914 -2.016 "O4'" A1JIM 29 A1JIM "O2'" O4 O 0 1 N N N N N N -19.627 8.286 -0.791 -1.131 1.751 -1.129 "O2'" A1JIM 30 A1JIM C14 C20 C 0 1 N N S N N N -19.222 9.368 -1.654 -1.012 1.135 0.156 C14 A1JIM 31 A1JIM S1 S1 S 0 1 N N N N N N -20.089 10.814 -1.126 -1.949 -0.417 0.172 S1 A1JIM 32 A1JIM C16 C21 C 0 1 N N N N N N -22.682 10.711 -0.145 -4.582 -1.078 -0.166 C16 A1JIM 33 A1JIM C18 C22 C 0 1 N N N N N N -23.549 12.761 1.086 -5.086 -3.117 -1.520 C18 A1JIM 34 A1JIM C19 C23 C 0 1 N N N N N N -24.135 10.257 -0.384 -4.468 -1.942 1.092 C19 A1JIM 35 A1JIM F4 F4 F 0 1 N N N N N N -25.466 12.859 -0.239 -3.649 -4.409 -0.108 F4 A1JIM 36 A1JIM F5 F5 F 0 1 N N N N N N -25.735 12.708 1.913 -5.812 -5.093 -0.382 F5 A1JIM 37 A1JIM OP3 O5 O 0 1 N N N N N N -22.280 10.143 1.124 -5.933 -0.640 -0.323 OP3 A1JIM 38 A1JIM C23 C24 C 0 1 N N N N N N -22.563 7.897 -3.194 -5.761 2.785 1.961 C23 A1JIM 39 A1JIM C25 C25 C 0 1 N N N N N N -23.200 9.354 -4.769 -5.826 2.463 -0.054 C25 A1JIM 40 A1JIM O6 O6 O 0 1 N N N N N N -22.470 11.525 -3.082 -3.541 0.764 2.238 O6 A1JIM 41 A1JIM H6 H1 H 0 1 N N N N N N -17.177 7.970 -2.858 0.907 2.836 1.143 H6 A1JIM 42 A1JIM H14 H2 H 0 1 N N N N N N -21.623 9.087 -1.083 -3.741 0.751 -0.933 H14 A1JIM 43 A1JIM H10 H3 H 0 1 N N N N N N -11.012 9.007 -1.967 4.550 -1.448 -0.739 H10 A1JIM 44 A1JIM H11 H4 H 0 1 N N N N N N -15.125 8.972 0.397 2.921 -0.066 -0.396 H11 A1JIM 45 A1JIM H15 H5 H 0 1 N N N N N N -21.591 12.556 0.190 -4.248 -1.285 -2.284 H15 A1JIM 46 A1JIM H16 H6 H 0 1 N N N N N N -22.939 12.693 -0.989 -3.137 -2.234 -1.269 H16 A1JIM 47 A1JIM H21 H7 H 0 1 N N N N N N -26.123 10.514 0.448 -6.417 -2.824 0.840 H21 A1JIM 48 A1JIM H22 H8 H 0 1 N N N N N N -24.826 10.306 1.673 -5.306 -3.773 1.856 H22 A1JIM 49 A1JIM H26 H9 H 0 1 N N N N N N -21.942 7.646 -5.281 -7.635 1.943 1.122 H26 A1JIM 50 A1JIM H27 H10 H 0 1 N N N N N N -23.662 7.231 -4.969 -7.421 3.727 0.831 H27 A1JIM 51 A1JIM H1 H11 H 0 1 N N N N N N -21.394 5.143 0.111 -2.265 4.257 -3.686 H1 A1JIM 52 A1JIM H2 H12 H 0 1 N N N N N N -19.464 6.203 0.871 -0.362 2.843 -3.390 H2 A1JIM 53 A1JIM H3 H13 H 0 1 N N N N N N -19.126 4.967 -0.388 -0.075 4.483 -2.760 H3 A1JIM 54 A1JIM H4 H14 H 0 1 N N N N N N -19.214 6.745 -2.132 -0.835 3.696 -0.498 H4 A1JIM 55 A1JIM H5 H15 H 0 1 N N N N N N -17.032 6.165 -1.215 1.567 3.743 -1.052 H5 A1JIM 56 A1JIM H7 H16 H 0 1 N N N N N N -17.477 9.850 -0.475 0.848 0.141 -0.293 H7 A1JIM 57 A1JIM H8 H17 H 0 1 N N N N N N -17.679 11.400 -2.242 0.112 -0.549 1.872 H8 A1JIM 58 A1JIM H9 H18 H 0 1 N N N N N N -13.243 8.736 1.691 7.204 1.206 1.325 H9 A1JIM 59 A1JIM H12 H19 H 0 1 N N N N N N -16.249 7.450 0.605 1.467 2.250 -2.917 H12 A1JIM 60 A1JIM H13 H20 H 0 1 N N N N N N -19.490 9.180 -2.704 -1.407 1.807 0.918 H13 A1JIM 61 A1JIM H17 H21 H 0 1 N N N N N N -23.190 12.374 2.051 -6.116 -2.783 -1.639 H17 A1JIM 62 A1JIM H18 H22 H 0 1 N N N N N N -23.522 13.861 1.099 -4.790 -3.703 -2.390 H18 A1JIM 63 A1JIM H19 H23 H 0 1 N N N N N N -24.472 10.640 -1.359 -4.764 -1.356 1.962 H19 A1JIM 64 A1JIM H20 H24 H 0 1 N N N N N N -24.168 9.158 -0.390 -3.438 -2.276 1.211 H20 A1JIM 65 A1JIM H23 H25 H 0 1 N N N N N N -22.853 10.464 1.811 -6.572 -1.361 -0.412 H23 A1JIM 66 A1JIM H24 H26 H 0 1 N N N N N N -21.510 7.770 -2.902 -5.996 2.329 2.922 H24 A1JIM 67 A1JIM H25 H27 H 0 1 N N N N N N -23.193 7.222 -2.597 -5.297 3.766 2.061 H25 A1JIM 68 A1JIM H28 H28 H 0 1 N N N N N N -22.482 9.994 -5.303 -5.381 3.359 -0.487 H28 A1JIM 69 A1JIM H29 H29 H 0 1 N N N N N N -24.218 9.567 -5.127 -6.117 1.730 -0.806 H29 A1JIM 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JIM "C3'" "O3'" SING N N 1 A1JIM "C3'" "C2'" SING N N 2 A1JIM "C2'" "C1'" SING N N 3 A1JIM "C1'" C4 SING N N 4 A1JIM C4 "C5'" SING N N 5 A1JIM "C5'" "O5'" SING N N 6 A1JIM C4 N3 SING N N 7 A1JIM N3 NAA SING Y N 8 A1JIM NAA N2 DOUB Y N 9 A1JIM CAA N2 SING Y N 10 A1JIM CAA C8 SING N N 11 A1JIM C8 CAB DOUB Y N 12 A1JIM CAB C9 SING Y N 13 A1JIM C9 F1 SING N N 14 A1JIM C8 C10 SING Y N 15 A1JIM C10 C11 DOUB Y N 16 A1JIM C11 F2 SING N N 17 A1JIM C11 C12 SING Y N 18 A1JIM C12 F3 SING N N 19 A1JIM CAA C13 DOUB Y N 20 A1JIM "C1'" "O4'" SING N N 21 A1JIM "C2'" "O2'" SING N N 22 A1JIM C14 "O2'" SING N N 23 A1JIM C14 S1 SING N N 24 A1JIM C5 S1 SING N N 25 A1JIM C5 C16 SING N N 26 A1JIM C16 C17 SING N N 27 A1JIM C17 C18 SING N N 28 A1JIM C16 C19 SING N N 29 A1JIM C19 C20 SING N N 30 A1JIM C20 C21 SING N N 31 A1JIM C21 F4 SING N N 32 A1JIM C21 F5 SING N N 33 A1JIM C16 OP3 SING N N 34 A1JIM C5 C6 SING N N 35 A1JIM C6 N1 SING N N 36 A1JIM C23 N1 SING N N 37 A1JIM C23 C24 SING N N 38 A1JIM C24 C25 SING N N 39 A1JIM C6 O6 DOUB N N 40 A1JIM C14 "C5'" SING N N 41 A1JIM C21 C18 SING N N 42 A1JIM C25 N1 SING N N 43 A1JIM C13 N3 SING Y N 44 A1JIM C12 C9 DOUB Y N 45 A1JIM C4 H6 SING N N 46 A1JIM C5 H14 SING N N 47 A1JIM C10 H10 SING N N 48 A1JIM C13 H11 SING N N 49 A1JIM C17 H15 SING N N 50 A1JIM C17 H16 SING N N 51 A1JIM C20 H21 SING N N 52 A1JIM C20 H22 SING N N 53 A1JIM C24 H26 SING N N 54 A1JIM C24 H27 SING N N 55 A1JIM "O3'" H1 SING N N 56 A1JIM "C3'" H2 SING N N 57 A1JIM "C3'" H3 SING N N 58 A1JIM "C2'" H4 SING N N 59 A1JIM "C1'" H5 SING N N 60 A1JIM "C5'" H7 SING N N 61 A1JIM "O5'" H8 SING N N 62 A1JIM CAB H9 SING N N 63 A1JIM "O4'" H12 SING N N 64 A1JIM C14 H13 SING N N 65 A1JIM C18 H17 SING N N 66 A1JIM C18 H18 SING N N 67 A1JIM C19 H19 SING N N 68 A1JIM C19 H20 SING N N 69 A1JIM OP3 H23 SING N N 70 A1JIM C23 H24 SING N N 71 A1JIM C23 H25 SING N N 72 A1JIM C25 H28 SING N N 73 A1JIM C25 H29 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JIM InChI InChI 1.06 "InChI=1S/C25H29F5N4O6S/c26-13-8-12(9-14(27)17(13)28)15-10-34(32-31-15)18-19(36)16(11-35)40-23(20(18)37)41-21(22(38)33-6-1-7-33)24(39)2-4-25(29,30)5-3-24/h8-10,16,18-21,23,35-37,39H,1-7,11H2/t16-,18+,19+,20-,21-,23+/m1/s1" A1JIM InChIKey InChI 1.06 WBPLZYOEASNOOW-YEJDNYEISA-N A1JIM SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](S[C@H](C(=O)N2CCC2)C3(O)CCC(F)(F)CC3)[C@H](O)[C@H]([C@H]1O)n4cc(nn4)c5cc(F)c(F)c(F)c5" A1JIM SMILES CACTVS 3.385 "OC[CH]1O[CH](S[CH](C(=O)N2CCC2)C3(O)CCC(F)(F)CC3)[CH](O)[CH]([CH]1O)n4cc(nn4)c5cc(F)c(F)c(F)c5" A1JIM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc(c(c1F)F)F)c2cn(nn2)[C@H]3[C@H]([C@H](O[C@H]([C@@H]3O)S[C@H](C(=O)N4CCC4)C5(CCC(CC5)(F)F)O)CO)O" A1JIM SMILES "OpenEye OEToolkits" 2.0.7 "c1c(cc(c(c1F)F)F)c2cn(nn2)C3C(C(OC(C3O)SC(C(=O)N4CCC4)C5(CCC(CC5)(F)F)O)CO)O" # _pdbx_chem_comp_identifier.comp_id A1JIM _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-1-(azetidin-1-yl)-2-[4,4-bis(fluoranyl)-1-oxidanyl-cyclohexyl]-2-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,5-bis(oxidanyl)-4-[4-[3,4,5-tris(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxan-2-yl]sulfanyl-ethanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JIM "Create component" 2025-06-27 PDBE A1JIM "Initial release" 2026-07-08 RCSB #