data_A1JJ1 # _chem_comp.id A1JJ1 _chem_comp.name "2-(4-(2-(3-Methoxyphenyl)ethoxy)phenylthiol)propanoyl-CoA" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C39 H54 N7 O19 P3 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-[4-[2-(3-methoxyphenyl)ethoxy]phenyl]sulfanylpropanethioate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-07-16 _chem_comp.pdbx_modified_date 2026-07-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1081.933 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JJ1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RZ4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JJ1 C4 C1 C 0 1 Y N N N N N -35.100 101.966 -28.602 6.663 7.065 1.678 C4 A1JJ1 1 A1JJ1 C14 C2 C 0 1 N N N N N N -31.213 93.266 -24.028 13.821 -2.335 0.356 C14 A1JJ1 2 A1JJ1 C5 C3 C 0 1 Y N N N N N -33.748 101.849 -28.868 7.521 6.788 0.629 C5 A1JJ1 3 A1JJ1 C6 C4 C 0 1 Y N N N N N -33.290 100.978 -29.858 7.125 5.932 -0.383 C6 A1JJ1 4 A1JJ1 C11 C5 C 0 1 Y N N N N N -29.618 96.869 -26.653 12.378 1.656 -2.970 C11 A1JJ1 5 A1JJ1 C7 C6 C 0 1 N N N N N N -31.809 100.850 -30.150 8.062 5.633 -1.524 C7 A1JJ1 6 A1JJ1 C8 C7 C 0 1 N N N N N N -30.970 100.271 -29.018 8.917 4.413 -1.175 C8 A1JJ1 7 A1JJ1 C9 C8 C 0 1 Y N N N N N -31.271 98.188 -27.798 10.642 3.066 -2.108 C9 A1JJ1 8 A1JJ1 C10 C9 C 0 1 Y N N N N N -30.068 98.097 -27.110 11.530 2.735 -3.121 C10 A1JJ1 9 A1JJ1 C12 C10 C 0 1 Y N N N N N -30.361 95.706 -26.871 12.342 0.902 -1.803 C12 A1JJ1 10 A1JJ1 C13 C11 C 0 1 N N R N N N -31.259 93.231 -25.534 12.850 -1.230 -0.062 C13 A1JJ1 11 A1JJ1 N1 N1 N 0 1 N N N N N N -33.847 88.538 -28.685 6.722 -3.585 0.587 N1 A1JJ1 12 A1JJ1 N2 N2 N 0 1 N N N N N N -34.812 87.248 -32.104 2.161 -5.359 0.951 N2 A1JJ1 13 A1JJ1 C3 C12 C 0 1 Y N N N N N -36.022 101.218 -29.315 5.411 6.483 1.720 C3 A1JJ1 14 A1JJ1 N3 N3 N 0 1 Y N N N N N -35.728 91.134 -42.564 -7.344 3.244 1.247 N3 A1JJ1 15 A1JJ1 C1 C13 C 0 1 N N N N N N -36.544 99.701 -32.423 2.947 5.377 1.859 C1 A1JJ1 16 A1JJ1 O1 O1 O 0 1 N N N N N N -36.512 99.609 -31.000 3.782 5.047 0.748 O1 A1JJ1 17 A1JJ1 C2 C14 C 0 1 Y N N N N N -35.583 100.353 -30.312 5.014 5.620 0.709 C2 A1JJ1 18 A1JJ1 O2 O2 O 0 1 N N N N N N -31.801 99.368 -28.262 9.806 4.128 -2.258 O2 A1JJ1 19 A1JJ1 S1 S1 S 0 1 N N N N N N -29.838 94.093 -26.306 13.420 -0.478 -1.612 S1 A1JJ1 20 A1JJ1 C15 C15 C 0 1 N N N N N N -31.432 91.804 -26.023 11.477 -1.817 -0.265 C15 A1JJ1 21 A1JJ1 O3 O3 O 0 1 N N N N N N -31.815 90.862 -25.312 11.118 -2.153 -1.374 O3 A1JJ1 22 A1JJ1 S2 S2 S 0 1 N N N N N N -31.165 91.613 -27.767 10.423 -2.011 1.071 S2 A1JJ1 23 A1JJ1 C16 C16 C 0 1 N N N N N N -31.937 89.970 -27.974 8.988 -2.733 0.237 C16 A1JJ1 24 A1JJ1 C17 C17 C 0 1 N N N N N N -33.398 89.921 -28.419 7.884 -3.001 1.262 C17 A1JJ1 25 A1JJ1 C18 C18 C 0 1 N N N N N N -33.415 87.864 -29.754 5.622 -3.906 1.296 C18 A1JJ1 26 A1JJ1 O4 O4 O 0 1 N N N N N N -32.645 88.374 -30.592 5.593 -3.711 2.492 O4 A1JJ1 27 A1JJ1 C19 C19 C 0 1 N N N N N N -33.954 86.470 -29.913 4.427 -4.507 0.601 C19 A1JJ1 28 A1JJ1 C20 C20 C 0 1 N N N N N N -34.240 86.132 -31.366 3.323 -4.774 1.626 C20 A1JJ1 29 A1JJ1 C21 C21 C 0 1 N N N N N N -36.071 87.649 -31.945 1.061 -5.679 1.660 C21 A1JJ1 30 A1JJ1 O5 O5 O 0 1 N N N N N N -36.851 87.128 -31.149 1.066 -5.574 2.868 O5 A1JJ1 31 A1JJ1 C22 C22 C 0 1 N N R N N N -36.511 88.825 -32.811 -0.176 -6.169 0.951 C22 A1JJ1 32 A1JJ1 O6 O6 O 0 1 N N N N N N -35.448 89.251 -33.681 0.115 -6.365 -0.434 O6 A1JJ1 33 A1JJ1 C23 C23 C 0 1 N N N N N N -36.983 90.033 -31.937 -1.291 -5.131 1.096 C23 A1JJ1 34 A1JJ1 C24 C24 C 0 1 N N N N N N -35.791 90.970 -31.685 -1.637 -4.957 2.576 C24 A1JJ1 35 A1JJ1 C25 C25 C 0 1 N N N N N N -37.623 89.616 -30.610 -0.819 -3.793 0.522 C25 A1JJ1 36 A1JJ1 C26 C26 C 0 1 N N N N N N -38.157 90.769 -32.568 -2.530 -5.604 0.334 C26 A1JJ1 37 A1JJ1 O7 O7 O 0 1 N N N N N N -37.824 91.251 -33.867 -3.571 -4.635 0.469 O7 A1JJ1 38 A1JJ1 P1 P1 P 0 1 N N N N N N -38.936 91.407 -35.008 -5.023 -4.807 -0.206 P1 A1JJ1 39 A1JJ1 O8 O8 O 0 1 N N N N N N -40.197 90.622 -34.897 -4.866 -5.030 -1.661 O8 A1JJ1 40 A1JJ1 O9 O9 O 0 1 N N N N N N -38.717 92.834 -35.334 -5.775 -6.069 0.452 O9 A1JJ1 41 A1JJ1 O10 O10 O 0 1 N N N N N N -38.158 90.553 -36.090 -5.892 -3.474 0.042 O10 A1JJ1 42 A1JJ1 P2 P2 P 0 1 N N N N N N -38.263 88.975 -36.410 -7.246 -2.887 -0.600 P2 A1JJ1 43 A1JJ1 O11 O11 O 0 1 N N N N N N -36.949 88.409 -36.002 -7.246 -3.130 -2.060 O11 A1JJ1 44 A1JJ1 O12 O12 O 0 1 N N N N N N -39.446 88.143 -36.027 -8.517 -3.618 0.066 O12 A1JJ1 45 A1JJ1 O13 O13 O 0 1 N N N N N N -38.238 89.142 -38.008 -7.330 -1.304 -0.319 O13 A1JJ1 46 A1JJ1 C27 C27 C 0 1 N N N N N N -37.674 90.361 -38.597 -8.364 -0.473 -0.852 C27 A1JJ1 47 A1JJ1 C28 C28 C 0 1 N N S N N N -37.452 90.132 -40.074 -8.145 0.970 -0.393 C28 A1JJ1 48 A1JJ1 O14 O14 O 0 1 N N N N N N -37.148 91.372 -40.737 -8.323 1.076 1.036 O14 A1JJ1 49 A1JJ1 C29 C29 C 0 1 N N R N N N -37.116 91.026 -42.126 -8.589 2.474 1.285 C29 A1JJ1 50 A1JJ1 C30 C30 C 0 1 Y N N N N N -34.551 90.868 -41.908 -6.167 2.849 0.684 C30 A1JJ1 51 A1JJ1 N4 N4 N 0 1 Y N N N N N -33.484 91.227 -42.583 -5.270 3.781 0.828 N4 A1JJ1 52 A1JJ1 C31 C31 C 0 1 Y N N N N N -33.997 91.787 -43.744 -5.813 4.831 1.490 C31 A1JJ1 53 A1JJ1 C32 C32 C 0 1 Y N N N N N -33.384 92.366 -44.869 -5.338 6.083 1.917 C32 A1JJ1 54 A1JJ1 N5 N5 N 0 1 N N N N N N -32.067 92.519 -44.998 -4.031 6.465 1.672 N5 A1JJ1 55 A1JJ1 N6 N6 N 0 1 Y N N N N N -34.197 92.863 -45.837 -6.174 6.891 2.561 N6 A1JJ1 56 A1JJ1 C33 C33 C 0 1 Y N N N N N -35.521 92.728 -45.706 -7.423 6.535 2.798 C33 A1JJ1 57 A1JJ1 N7 N7 N 0 1 Y N N N N N -36.205 92.195 -44.703 -7.911 5.373 2.417 N7 A1JJ1 58 A1JJ1 C34 C34 C 0 1 Y N N N N N -35.380 91.743 -43.742 -7.150 4.499 1.767 C34 A1JJ1 59 A1JJ1 C35 C35 C 0 1 N N R N N N -37.830 89.690 -42.321 -9.525 2.907 0.134 C35 A1JJ1 60 A1JJ1 O15 O15 O 0 1 N N N N N N -38.741 89.857 -43.383 -10.892 2.816 0.540 O15 A1JJ1 61 A1JJ1 C36 C36 C 0 1 N N S N N N -38.551 89.555 -40.982 -9.226 1.895 -0.994 C36 A1JJ1 62 A1JJ1 O16 O16 O 0 1 N N N N N N -39.759 90.328 -41.039 -10.400 1.148 -1.321 O16 A1JJ1 63 A1JJ1 P3 P3 P 0 1 N N N N N N -41.250 89.717 -41.259 -10.992 1.054 -2.815 P3 A1JJ1 64 A1JJ1 O17 O17 O 0 1 N N N N N N -41.470 88.495 -40.385 -11.224 2.418 -3.341 O17 A1JJ1 65 A1JJ1 O18 O18 O 0 1 N N N N N N -42.177 90.873 -40.946 -9.940 0.285 -3.761 O18 A1JJ1 66 A1JJ1 O19 O19 O 0 1 N N N N N N -41.362 89.277 -42.696 -12.383 0.244 -2.791 O19 A1JJ1 67 A1JJ1 C37 C37 C 0 1 Y N N N N N -31.568 95.822 -27.559 11.456 1.239 -0.787 C37 A1JJ1 68 A1JJ1 C38 C38 C 0 1 Y N N N N N -32.020 97.045 -28.011 10.613 2.321 -0.938 C38 A1JJ1 69 A1JJ1 C39 C39 C 0 1 Y N N N N N -34.225 100.228 -30.572 5.872 5.352 -0.348 C39 A1JJ1 70 A1JJ1 H5 H1 H 0 1 N N N N N N -35.439 102.645 -27.833 6.974 7.734 2.467 H5 A1JJ1 71 A1JJ1 H14 H2 H 0 1 N N N N N N -32.087 92.736 -23.622 13.527 -2.728 1.330 H14 A1JJ1 72 A1JJ1 H15 H3 H 0 1 N N N N N N -30.292 92.777 -23.678 13.798 -3.138 -0.381 H15 A1JJ1 73 A1JJ1 H16 H4 H 0 1 N N N N N N -31.226 94.311 -23.685 14.830 -1.928 0.419 H16 A1JJ1 74 A1JJ1 H6 H5 H 0 1 N N N N N N -33.039 102.437 -28.304 8.501 7.240 0.600 H6 A1JJ1 75 A1JJ1 H12 H6 H 0 1 N N N N N N -28.680 96.810 -26.121 13.067 1.395 -3.760 H12 A1JJ1 76 A1JJ1 H7 H7 H 0 1 N N N N N N -31.691 100.198 -31.028 7.484 5.425 -2.424 H7 A1JJ1 77 A1JJ1 H8 H8 H 0 1 N N N N N N -31.421 101.853 -30.382 8.710 6.492 -1.698 H8 A1JJ1 78 A1JJ1 H10 H9 H 0 1 N N N N N N -30.109 99.727 -29.433 9.496 4.620 -0.275 H10 A1JJ1 79 A1JJ1 H9 H10 H 0 1 N N N N N N -30.612 101.082 -28.367 8.270 3.553 -1.002 H9 A1JJ1 80 A1JJ1 H11 H11 H 0 1 N N N N N N -29.482 98.986 -26.931 11.558 3.321 -4.027 H11 A1JJ1 81 A1JJ1 H13 H12 H 0 1 N N N N N N -32.140 93.805 -25.858 12.808 -0.468 0.717 H13 A1JJ1 82 A1JJ1 H21 H13 H 0 1 N N N N N N -34.486 88.099 -28.053 6.746 -3.741 -0.370 H21 A1JJ1 83 A1JJ1 H26 H14 H 0 1 N N N N N N -34.234 87.735 -32.759 2.184 -5.515 -0.006 H26 A1JJ1 84 A1JJ1 H4 H15 H 0 1 N N N N N N -37.076 101.306 -29.098 4.741 6.700 2.539 H4 A1JJ1 85 A1JJ1 H1 H16 H 0 1 N N N N N N -37.338 99.049 -32.815 2.770 6.453 1.873 H1 A1JJ1 86 A1JJ1 H2 H17 H 0 1 N N N N N N -36.745 100.741 -32.719 1.996 4.854 1.768 H2 A1JJ1 87 A1JJ1 H3 H18 H 0 1 N N N N N N -35.574 99.384 -32.833 3.439 5.078 2.785 H3 A1JJ1 88 A1JJ1 H17 H19 H 0 1 N N N N N N -31.347 89.422 -28.724 8.621 -2.040 -0.520 H17 A1JJ1 89 A1JJ1 H18 H20 H 0 1 N N N N N N -31.871 89.452 -27.006 9.278 -3.670 -0.239 H18 A1JJ1 90 A1JJ1 H19 H21 H 0 1 N N N N N N -34.026 90.352 -27.626 7.595 -2.063 1.737 H19 A1JJ1 91 A1JJ1 H20 H22 H 0 1 N N N N N N -33.510 90.514 -29.339 8.251 -3.694 2.019 H20 A1JJ1 92 A1JJ1 H22 H23 H 0 1 N N N N N N -33.214 85.756 -29.522 4.060 -3.813 -0.156 H22 A1JJ1 93 A1JJ1 H23 H24 H 0 1 N N N N N N -34.888 86.383 -29.338 4.717 -5.444 0.126 H23 A1JJ1 94 A1JJ1 H24 H25 H 0 1 N N N N N N -33.297 85.837 -31.850 3.034 -3.837 2.101 H24 A1JJ1 95 A1JJ1 H25 H26 H 0 1 N N N N N N -34.947 85.290 -31.398 3.690 -5.468 2.383 H25 A1JJ1 96 A1JJ1 H27 H27 H 0 1 N N N N N N -37.368 88.499 -33.419 -0.498 -7.112 1.392 H27 A1JJ1 97 A1JJ1 H28 H28 H 0 1 N N N N N N -35.689 89.080 -34.584 0.409 -5.565 -0.892 H28 A1JJ1 98 A1JJ1 H29 H29 H 0 1 N N N N N N -36.117 91.822 -31.070 -0.801 -4.485 3.092 H29 A1JJ1 99 A1JJ1 H30 H30 H 0 1 N N N N N N -34.998 90.420 -31.158 -2.523 -4.330 2.670 H30 A1JJ1 100 A1JJ1 H31 H31 H 0 1 N N N N N N -35.405 91.338 -32.647 -1.833 -5.933 3.020 H31 A1JJ1 101 A1JJ1 H32 H32 H 0 1 N N N N N N -37.929 90.513 -30.052 -0.572 -3.917 -0.533 H32 A1JJ1 102 A1JJ1 H33 H33 H 0 1 N N N N N N -38.505 88.990 -30.809 -1.613 -3.053 0.625 H33 A1JJ1 103 A1JJ1 H34 H34 H 0 1 N N N N N N -36.895 89.045 -30.015 0.064 -3.456 1.064 H34 A1JJ1 104 A1JJ1 H35 H35 H 0 1 N N N N N N -39.011 90.080 -32.649 -2.283 -5.728 -0.721 H35 A1JJ1 105 A1JJ1 H36 H36 H 0 1 N N N N N N -38.432 91.621 -31.929 -2.866 -6.557 0.743 H36 A1JJ1 106 A1JJ1 H51 H37 H 0 1 N N N N N N -39.554 93.257 -35.485 -5.911 -5.991 1.406 H51 A1JJ1 107 A1JJ1 H52 H38 H 0 1 N N N N N N -39.151 87.364 -35.571 -8.580 -3.501 1.024 H52 A1JJ1 108 A1JJ1 H37 H39 H 0 1 N N N N N N -38.373 91.198 -38.454 -8.340 -0.516 -1.941 H37 A1JJ1 109 A1JJ1 H38 H40 H 0 1 N N N N N N -36.715 90.597 -38.111 -9.332 -0.825 -0.495 H38 A1JJ1 110 A1JJ1 H39 H41 H 0 1 N N N N N N -36.578 89.471 -40.172 -7.150 1.311 -0.678 H39 A1JJ1 111 A1JJ1 H40 H42 H 0 1 N N N N N N -37.698 91.780 -42.676 -9.084 2.600 2.247 H40 A1JJ1 112 A1JJ1 H41 H43 H 0 1 N N N N N N -34.508 90.408 -40.932 -6.003 1.901 0.193 H41 A1JJ1 113 A1JJ1 H42 H44 H 0 1 N N N N N N -31.870 93.010 -45.846 -3.430 5.866 1.201 H42 A1JJ1 114 A1JJ1 H43 H45 H 0 1 N N N N N N -31.715 93.041 -44.221 -3.714 7.331 1.972 H43 A1JJ1 115 A1JJ1 H44 H46 H 0 1 N N N N N N -36.113 93.104 -46.528 -8.068 7.223 3.324 H44 A1JJ1 116 A1JJ1 H45 H47 H 0 1 N N N N N N -37.116 88.869 -42.481 -9.290 3.922 -0.187 H45 A1JJ1 117 A1JJ1 H46 H48 H 0 1 N N N N N N -39.206 89.042 -43.533 -11.120 3.386 1.286 H46 A1JJ1 118 A1JJ1 H47 H49 H 0 1 N N N N N N -38.741 88.498 -40.742 -8.842 2.409 -1.876 H47 A1JJ1 119 A1JJ1 H53 H50 H 0 1 N N N N N N -42.757 90.630 -40.234 -9.740 -0.617 -3.476 H53 A1JJ1 120 A1JJ1 H54 H51 H 0 1 N N N N N N -41.543 88.345 -42.729 -12.798 0.148 -3.659 H54 A1JJ1 121 A1JJ1 H48 H52 H 0 1 N N N N N N -32.161 94.938 -27.742 11.427 0.653 0.120 H48 A1JJ1 122 A1JJ1 H49 H53 H 0 1 N N N N N N -32.963 97.110 -28.533 9.921 2.580 -0.150 H49 A1JJ1 123 A1JJ1 H50 H54 H 0 1 N N N N N N -33.889 99.542 -31.336 5.564 4.684 -1.139 H50 A1JJ1 124 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JJ1 C1 O1 SING N N 1 A1JJ1 O1 C2 SING N N 2 A1JJ1 C2 C3 DOUB Y N 3 A1JJ1 C3 C4 SING Y N 4 A1JJ1 C4 C5 DOUB Y N 5 A1JJ1 C5 C6 SING Y N 6 A1JJ1 C6 C7 SING N N 7 A1JJ1 C7 C8 SING N N 8 A1JJ1 C8 O2 SING N N 9 A1JJ1 O2 C9 SING N N 10 A1JJ1 C9 C10 DOUB Y N 11 A1JJ1 C10 C11 SING Y N 12 A1JJ1 C11 C12 DOUB Y N 13 A1JJ1 C12 S1 SING N N 14 A1JJ1 S1 C13 SING N N 15 A1JJ1 C13 C14 SING N N 16 A1JJ1 C13 C15 SING N N 17 A1JJ1 C15 O3 DOUB N N 18 A1JJ1 C15 S2 SING N N 19 A1JJ1 S2 C16 SING N N 20 A1JJ1 C16 C17 SING N N 21 A1JJ1 C17 N1 SING N N 22 A1JJ1 N1 C18 SING N N 23 A1JJ1 C18 O4 DOUB N N 24 A1JJ1 C18 C19 SING N N 25 A1JJ1 C19 C20 SING N N 26 A1JJ1 C20 N2 SING N N 27 A1JJ1 N2 C21 SING N N 28 A1JJ1 C21 O5 DOUB N N 29 A1JJ1 C21 C22 SING N N 30 A1JJ1 C22 O6 SING N N 31 A1JJ1 C22 C23 SING N N 32 A1JJ1 C23 C24 SING N N 33 A1JJ1 C23 C25 SING N N 34 A1JJ1 C23 C26 SING N N 35 A1JJ1 C26 O7 SING N N 36 A1JJ1 O7 P1 SING N N 37 A1JJ1 P1 O8 DOUB N N 38 A1JJ1 P1 O9 SING N N 39 A1JJ1 P1 O10 SING N N 40 A1JJ1 O10 P2 SING N N 41 A1JJ1 P2 O11 DOUB N N 42 A1JJ1 P2 O12 SING N N 43 A1JJ1 P2 O13 SING N N 44 A1JJ1 O13 C27 SING N N 45 A1JJ1 C27 C28 SING N N 46 A1JJ1 C28 O14 SING N N 47 A1JJ1 O14 C29 SING N N 48 A1JJ1 C29 N3 SING N N 49 A1JJ1 N3 C30 SING Y N 50 A1JJ1 C30 N4 DOUB Y N 51 A1JJ1 N4 C31 SING Y N 52 A1JJ1 C31 C32 SING Y N 53 A1JJ1 C32 N5 SING N N 54 A1JJ1 C32 N6 DOUB Y N 55 A1JJ1 N6 C33 SING Y N 56 A1JJ1 C33 N7 DOUB Y N 57 A1JJ1 N7 C34 SING Y N 58 A1JJ1 C29 C35 SING N N 59 A1JJ1 C35 O15 SING N N 60 A1JJ1 C35 C36 SING N N 61 A1JJ1 C36 O16 SING N N 62 A1JJ1 O16 P3 SING N N 63 A1JJ1 P3 O17 DOUB N N 64 A1JJ1 P3 O18 SING N N 65 A1JJ1 P3 O19 SING N N 66 A1JJ1 C12 C37 SING Y N 67 A1JJ1 C37 C38 DOUB Y N 68 A1JJ1 C6 C39 DOUB Y N 69 A1JJ1 C2 C39 SING Y N 70 A1JJ1 C9 C38 SING Y N 71 A1JJ1 C28 C36 SING N N 72 A1JJ1 N3 C34 SING Y N 73 A1JJ1 C31 C34 DOUB Y N 74 A1JJ1 C4 H5 SING N N 75 A1JJ1 C14 H14 SING N N 76 A1JJ1 C14 H15 SING N N 77 A1JJ1 C14 H16 SING N N 78 A1JJ1 C5 H6 SING N N 79 A1JJ1 C11 H12 SING N N 80 A1JJ1 C7 H7 SING N N 81 A1JJ1 C7 H8 SING N N 82 A1JJ1 C8 H10 SING N N 83 A1JJ1 C8 H9 SING N N 84 A1JJ1 C10 H11 SING N N 85 A1JJ1 C13 H13 SING N N 86 A1JJ1 N1 H21 SING N N 87 A1JJ1 N2 H26 SING N N 88 A1JJ1 C3 H4 SING N N 89 A1JJ1 C1 H1 SING N N 90 A1JJ1 C1 H2 SING N N 91 A1JJ1 C1 H3 SING N N 92 A1JJ1 C16 H17 SING N N 93 A1JJ1 C16 H18 SING N N 94 A1JJ1 C17 H19 SING N N 95 A1JJ1 C17 H20 SING N N 96 A1JJ1 C19 H22 SING N N 97 A1JJ1 C19 H23 SING N N 98 A1JJ1 C20 H24 SING N N 99 A1JJ1 C20 H25 SING N N 100 A1JJ1 C22 H27 SING N N 101 A1JJ1 O6 H28 SING N N 102 A1JJ1 C24 H29 SING N N 103 A1JJ1 C24 H30 SING N N 104 A1JJ1 C24 H31 SING N N 105 A1JJ1 C25 H32 SING N N 106 A1JJ1 C25 H33 SING N N 107 A1JJ1 C25 H34 SING N N 108 A1JJ1 C26 H35 SING N N 109 A1JJ1 C26 H36 SING N N 110 A1JJ1 O9 H51 SING N N 111 A1JJ1 O12 H52 SING N N 112 A1JJ1 C27 H37 SING N N 113 A1JJ1 C27 H38 SING N N 114 A1JJ1 C28 H39 SING N N 115 A1JJ1 C29 H40 SING N N 116 A1JJ1 C30 H41 SING N N 117 A1JJ1 N5 H42 SING N N 118 A1JJ1 N5 H43 SING N N 119 A1JJ1 C33 H44 SING N N 120 A1JJ1 C35 H45 SING N N 121 A1JJ1 O15 H46 SING N N 122 A1JJ1 C36 H47 SING N N 123 A1JJ1 O18 H53 SING N N 124 A1JJ1 O19 H54 SING N N 125 A1JJ1 C37 H48 SING N N 126 A1JJ1 C38 H49 SING N N 127 A1JJ1 C39 H50 SING N N 128 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JJ1 InChI InChI 1.06 "InChI=1S/C39H54N7O19P3S2/c1-23(70-27-10-8-25(9-11-27)60-16-13-24-6-5-7-26(18-24)59-4)38(51)69-17-15-41-29(47)12-14-42-36(50)33(49)39(2,3)20-62-68(57,58)65-67(55,56)61-19-28-32(64-66(52,53)54)31(48)37(63-28)46-22-45-30-34(40)43-21-44-35(30)46/h5-11,18,21-23,28,31-33,37,48-49H,12-17,19-20H2,1-4H3,(H,41,47)(H,42,50)(H,55,56)(H,57,58)(H2,40,43,44)(H2,52,53,54)/t23-,28+,31-,32-,33+,37-/m1/s1" A1JJ1 InChIKey InChI 1.06 KINGFLOJFMUYOR-MSAWPFKFSA-N A1JJ1 SMILES_CANONICAL CACTVS 3.385 "COc1cccc(CCOc2ccc(S[C@H](C)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[C@@H]3O[C@H]([C@H](O)[C@@H]3O[P](O)(O)=O)n4cnc5c(N)ncnc45)cc2)c1" A1JJ1 SMILES CACTVS 3.385 "COc1cccc(CCOc2ccc(S[CH](C)C(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O[P](O)(O)=O)n4cnc5c(N)ncnc45)cc2)c1" A1JJ1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)Sc4ccc(cc4)OCCc5cccc(c5)OC" A1JJ1 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)Sc4ccc(cc4)OCCc5cccc(c5)OC" # _pdbx_chem_comp_identifier.comp_id A1JJ1 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-[4-[2-(3-methoxyphenyl)ethoxy]phenyl]sulfanylpropanethioate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JJ1 "Create component" 2025-07-16 PDBE A1JJ1 "Initial release" 2026-07-29 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1JJ1 _pdbx_chem_comp_synonyms.name "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-[4-[2-(3-methoxyphenyl)ethoxy]phenyl]sulfanylpropanethioate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #