data_A1JJ3 # _chem_comp.id A1JJ3 _chem_comp.name "2-(3-(2-Phenylethoxy)phenylthiol)propanoyl-CoA" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C38 H52 N7 O18 P3 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-[3-(2-phenylethoxy)phenyl]sulfanylpropanethioate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-07-16 _chem_comp.pdbx_modified_date 2026-07-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1051.907 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JJ3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RZ6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JJ3 C4 C1 C 0 1 Y N N N N N -31.826 95.824 -27.604 15.064 0.514 2.077 C4 A1JJ3 1 A1JJ3 C14 C2 C 0 1 Y N N N N N -26.562 103.017 -30.341 19.783 -4.825 -3.534 C14 A1JJ3 2 A1JJ3 C5 C3 C 0 1 Y N N N N N -32.337 97.002 -28.137 16.301 0.066 1.658 C5 A1JJ3 3 A1JJ3 C6 C4 C 0 1 Y N N N N N -31.638 98.193 -28.060 16.398 -1.058 0.860 C6 A1JJ3 4 A1JJ3 C11 C5 C 0 1 Y N N N N N -25.665 100.838 -28.902 18.674 -5.809 -1.200 C11 A1JJ3 5 A1JJ3 C7 C6 C 0 1 Y N N N N N -30.398 98.208 -27.426 15.252 -1.740 0.476 C7 A1JJ3 6 A1JJ3 C8 C7 C 0 1 N N N N N N -29.336 100.159 -28.487 16.663 -3.249 -0.701 C8 A1JJ3 7 A1JJ3 C9 C8 C 0 1 N N N N N N -27.938 99.731 -28.956 16.572 -4.502 -1.574 C9 A1JJ3 8 A1JJ3 C10 C9 C 0 1 Y N N N N N -26.996 100.865 -29.304 17.957 -4.928 -1.988 C10 A1JJ3 9 A1JJ3 C12 C10 C 0 1 Y N N N N N -24.806 101.891 -29.203 19.944 -6.200 -1.580 C12 A1JJ3 10 A1JJ3 C13 C11 C 0 1 Y N N N N N -25.252 102.977 -29.922 20.499 -5.707 -2.746 C13 A1JJ3 11 A1JJ3 N1 N1 N 0 1 N N N N N N -33.883 88.750 -28.770 5.522 3.487 0.381 N1 A1JJ3 12 A1JJ3 N2 N2 N 0 1 N N N N N N -34.850 87.412 -32.042 0.866 5.020 0.157 N2 A1JJ3 13 A1JJ3 C3 C12 C 0 1 Y N N N N N -30.577 95.815 -26.957 13.912 -0.164 1.696 C3 A1JJ3 14 A1JJ3 N3 N3 N 0 1 Y N N N N N -35.723 91.221 -42.489 -9.932 -3.864 1.406 N3 A1JJ3 15 A1JJ3 C1 C13 C 0 1 N N N N N N -31.207 93.332 -23.942 12.677 2.647 0.707 C1 A1JJ3 16 A1JJ3 C2 C14 C 0 1 N N R N N N -31.275 93.328 -25.456 11.770 1.422 0.844 C2 A1JJ3 17 A1JJ3 S1 S1 S 0 1 N N N N N N -29.940 94.265 -26.287 12.334 0.403 2.235 S1 A1JJ3 18 A1JJ3 O1 O1 O 0 1 N N N N N N -29.703 99.401 -27.311 15.349 -2.846 -0.309 O1 A1JJ3 19 A1JJ3 C15 C15 C 0 1 Y N N N N N -27.429 101.970 -30.037 18.512 -4.436 -3.154 C15 A1JJ3 20 A1JJ3 C16 C16 C 0 1 Y N N N N N -29.876 97.030 -26.874 14.008 -1.294 0.893 C16 A1JJ3 21 A1JJ3 C17 C17 C 0 1 N N N N N N -31.484 91.916 -25.974 10.353 1.872 1.092 C17 A1JJ3 22 A1JJ3 O2 O2 O 0 1 N N N N N N -31.928 91.034 -25.227 9.932 1.950 2.227 O2 A1JJ3 23 A1JJ3 S2 S2 S 0 1 N N N N N N -31.193 91.733 -27.743 9.338 2.273 -0.227 S2 A1JJ3 24 A1JJ3 C18 C18 C 0 1 N N N N N N -32.434 90.734 -28.633 7.827 2.720 0.663 C18 A1JJ3 25 A1JJ3 C19 C19 C 0 1 N N N N N N -33.094 89.643 -27.916 6.745 3.126 -0.340 C19 A1JJ3 26 A1JJ3 C20 C20 C 0 1 N N N N N N -33.409 88.066 -29.818 4.429 3.880 -0.302 C20 A1JJ3 27 A1JJ3 O3 O3 O 0 1 N N N N N N -32.527 88.497 -30.548 4.457 3.935 -1.513 O3 A1JJ3 28 A1JJ3 C21 C21 C 0 1 N N N N N N -33.880 86.640 -29.920 3.171 4.253 0.439 C21 A1JJ3 29 A1JJ3 C22 C22 C 0 1 N N N N N N -34.263 86.285 -31.338 2.089 4.659 -0.563 C22 A1JJ3 30 A1JJ3 C23 C23 C 0 1 N N N N N N -36.096 87.835 -31.842 -0.228 5.413 -0.526 C23 A1JJ3 31 A1JJ3 O4 O4 O 0 1 N N N N N N -36.851 87.342 -30.993 -0.173 5.552 -1.730 O4 A1JJ3 32 A1JJ3 C24 C24 C 0 1 N N R N N N -36.552 88.967 -32.763 -1.518 5.681 0.206 C24 A1JJ3 33 A1JJ3 O5 O5 O 0 1 N N N N N N -35.546 89.288 -33.721 -1.289 5.610 1.615 O5 A1JJ3 34 A1JJ3 C25 C25 C 0 1 N N N N N N -36.851 90.309 -32.016 -2.558 4.634 -0.195 C25 A1JJ3 35 A1JJ3 C26 C26 C 0 1 N N N N N N -37.918 90.026 -30.948 -2.831 4.735 -1.697 C26 A1JJ3 36 A1JJ3 C27 C27 C 0 1 N N N N N N -35.595 90.894 -31.364 -2.029 3.236 0.133 C27 A1JJ3 37 A1JJ3 C28 C28 C 0 1 N N N N N N -37.289 91.420 -32.993 -3.855 4.882 0.577 C28 A1JJ3 38 A1JJ3 O6 O6 O 0 1 N N N N N N -38.593 91.045 -33.513 -4.827 3.904 0.202 O6 A1JJ3 39 A1JJ3 P1 P1 P 0 1 N N N N N N -39.111 91.441 -34.978 -6.313 3.862 0.820 P1 A1JJ3 40 A1JJ3 O7 O7 O 0 1 N N N N N N -40.424 90.729 -35.039 -6.231 3.536 2.395 O7 A1JJ3 41 A1JJ3 O8 O8 O 0 1 N N N N N N -38.737 92.845 -35.218 -6.967 5.175 0.622 O8 A1JJ3 42 A1JJ3 O9 O9 O 0 1 N N N N N N -38.120 90.664 -35.961 -7.171 2.719 0.080 O9 A1JJ3 43 A1JJ3 P2 P2 P 0 1 N N N N N N -38.262 89.136 -36.362 -8.747 2.433 -0.084 P2 A1JJ3 44 A1JJ3 O10 O10 O 0 1 N N N N N N -39.430 88.348 -35.881 -9.346 3.375 -1.244 O10 A1JJ3 45 A1JJ3 O11 O11 O 0 1 N N N N N N -36.963 88.473 -36.058 -9.437 2.723 1.192 O11 A1JJ3 46 A1JJ3 O12 O12 O 0 1 N N N N N N -38.317 89.316 -37.951 -8.974 0.888 -0.478 O12 A1JJ3 47 A1JJ3 C29 C29 C 0 1 N N N N N N -37.381 90.195 -38.601 -10.270 0.296 -0.592 C29 A1JJ3 48 A1JJ3 C30 C30 C 0 1 N N R N N N -38.045 90.741 -39.846 -10.125 -1.177 -0.978 C30 A1JJ3 49 A1JJ3 O13 O13 O 0 1 N N N N N N -37.079 91.479 -40.619 -9.511 -1.906 0.098 O13 A1JJ3 50 A1JJ3 C31 C31 C 0 1 N N R N N N -37.061 90.981 -41.959 -10.091 -3.228 0.096 C31 A1JJ3 51 A1JJ3 C32 C32 C 0 1 Y N N N N N -34.526 91.085 -41.836 -9.671 -3.229 2.584 C32 A1JJ3 52 A1JJ3 N4 N4 N 0 1 Y N N N N N -33.504 91.500 -42.539 -9.592 -4.098 3.549 N4 A1JJ3 53 A1JJ3 C33 C33 C 0 1 Y N N N N N -34.064 91.970 -43.715 -9.798 -5.342 3.054 C33 A1JJ3 54 A1JJ3 C34 C34 C 0 1 Y N N N N N -33.504 92.562 -44.861 -9.834 -6.633 3.609 C34 A1JJ3 55 A1JJ3 N5 N5 N 0 1 N N N N N N -32.209 92.833 -44.998 -9.620 -6.829 4.962 N5 A1JJ3 56 A1JJ3 N6 N6 N 0 1 Y N N N N N -34.359 92.976 -45.833 -10.080 -7.661 2.803 N6 A1JJ3 57 A1JJ3 C35 C35 C 0 1 Y N N N N N -35.665 92.722 -45.691 -10.287 -7.484 1.511 C35 A1JJ3 58 A1JJ3 N7 N7 N 0 1 Y N N N N N -36.300 92.161 -44.668 -10.262 -6.294 0.948 N7 A1JJ3 59 A1JJ3 C36 C36 C 0 1 Y N N N N N -35.437 91.811 -43.694 -10.024 -5.206 1.674 C36 A1JJ3 60 A1JJ3 C37 C37 C 0 1 N N R N N N -37.553 89.548 -41.866 -11.589 -2.966 -0.205 C37 A1JJ3 61 A1JJ3 O14 O14 O 0 1 N N N N N N -37.890 89.222 -43.193 -12.199 -4.115 -0.798 O14 A1JJ3 62 A1JJ3 C38 C38 C 0 1 N N S N N N -38.665 89.727 -40.829 -11.516 -1.795 -1.219 C38 A1JJ3 63 A1JJ3 O15 O15 O 0 1 N N N N N N -39.830 90.353 -41.344 -11.625 -2.284 -2.557 O15 A1JJ3 64 A1JJ3 P3 P3 P 0 1 N N N N N N -41.345 89.803 -41.337 -12.782 -1.811 -3.573 P3 A1JJ3 65 A1JJ3 O16 O16 O 0 1 N N N N N N -41.778 88.881 -40.227 -12.522 -2.461 -5.023 O16 A1JJ3 66 A1JJ3 O17 O17 O 0 1 N N N N N N -42.180 91.056 -41.357 -14.214 -2.293 -3.017 O17 A1JJ3 67 A1JJ3 O18 O18 O 0 1 N N N N N N -41.325 89.009 -42.604 -12.767 -0.335 -3.684 O18 A1JJ3 68 A1JJ3 H1 H1 H 0 1 N N N N N N -32.393 94.908 -27.687 14.991 1.390 2.704 H1 A1JJ3 69 A1JJ3 H2 H2 H 0 1 N N N N N N -26.920 103.864 -30.908 20.218 -4.438 -4.443 H2 A1JJ3 70 A1JJ3 H3 H3 H 0 1 N N N N N N -33.302 96.987 -28.622 17.195 0.595 1.955 H3 A1JJ3 71 A1JJ3 H4 H4 H 0 1 N N N N N N -32.047 99.098 -28.485 17.367 -1.407 0.535 H4 A1JJ3 72 A1JJ3 H5 H5 H 0 1 N N N N N N -25.293 99.988 -28.349 18.240 -6.194 -0.289 H5 A1JJ3 73 A1JJ3 H6 H6 H 0 1 N N N N N N -29.329 101.232 -28.244 17.256 -3.467 0.187 H6 A1JJ3 74 A1JJ3 H7 H7 H 0 1 N N N N N N -30.066 99.969 -29.288 17.136 -2.446 -1.266 H7 A1JJ3 75 A1JJ3 H8 H8 H 0 1 N N N N N N -28.058 99.102 -29.850 16.099 -5.305 -1.009 H8 A1JJ3 76 A1JJ3 H9 H9 H 0 1 N N N N N N -27.476 99.140 -28.151 15.979 -4.284 -2.462 H9 A1JJ3 77 A1JJ3 H10 H10 H 0 1 N N N N N N -23.779 101.856 -28.869 20.504 -6.888 -0.964 H10 A1JJ3 78 A1JJ3 H11 H11 H 0 1 N N N N N N -24.580 103.790 -30.155 21.492 -6.012 -3.043 H11 A1JJ3 79 A1JJ3 H12 H12 H 0 1 N N N N N N -34.853 88.643 -28.552 5.499 3.444 1.350 H12 A1JJ3 80 A1JJ3 H13 H13 H 0 1 N N N N N N -34.288 87.896 -32.713 0.843 4.977 1.126 H13 A1JJ3 81 A1JJ3 H14 H14 H 0 1 N N N N N N -32.045 92.747 -23.535 12.709 3.182 1.656 H14 A1JJ3 82 A1JJ3 H15 H15 H 0 1 N N N N N N -30.256 92.885 -23.617 13.683 2.325 0.437 H15 A1JJ3 83 A1JJ3 H16 H16 H 0 1 N N N N N N -31.270 94.367 -23.575 12.285 3.304 -0.068 H16 A1JJ3 84 A1JJ3 H17 H17 H 0 1 N N N N N N -32.183 93.889 -25.723 11.809 0.837 -0.075 H17 A1JJ3 85 A1JJ3 H18 H18 H 0 1 N N N N N N -28.454 102.015 -30.375 17.952 -3.746 -3.770 H18 A1JJ3 86 A1JJ3 H19 H19 H 0 1 N N N N N N -28.918 97.057 -26.376 13.115 -1.824 0.595 H19 A1JJ3 87 A1JJ3 H20 H20 H 0 1 N N N N N N -31.930 90.292 -29.505 7.481 1.865 1.244 H20 A1JJ3 88 A1JJ3 H21 H21 H 0 1 N N N N N N -33.221 91.422 -28.974 8.033 3.554 1.333 H21 A1JJ3 89 A1JJ3 H22 H22 H 0 1 N N N N N N -33.765 90.082 -27.163 6.539 2.291 -1.009 H22 A1JJ3 90 A1JJ3 H23 H23 H 0 1 N N N N N N -32.321 89.044 -27.413 7.091 3.981 -0.920 H23 A1JJ3 91 A1JJ3 H24 H24 H 0 1 N N N N N N -34.756 86.505 -29.268 2.825 3.398 1.020 H24 A1JJ3 92 A1JJ3 H25 H25 H 0 1 N N N N N N -33.071 85.972 -29.590 3.377 5.087 1.109 H25 A1JJ3 93 A1JJ3 H26 H26 H 0 1 N N N N N N -34.993 85.463 -31.313 1.883 3.824 -1.233 H26 A1JJ3 94 A1JJ3 H27 H27 H 0 1 N N N N N N -33.362 85.959 -31.878 2.435 5.514 -1.145 H27 A1JJ3 95 A1JJ3 H28 H28 H 0 1 N N N N N N -37.471 88.650 -33.277 -1.883 6.674 -0.053 H28 A1JJ3 96 A1JJ3 H29 H29 H 0 1 N N N N N N -35.858 89.073 -34.592 -0.962 4.752 1.918 H29 A1JJ3 97 A1JJ3 H30 H30 H 0 1 N N N N N N -37.563 89.230 -30.277 -1.948 4.414 -2.250 H30 A1JJ3 98 A1JJ3 H31 H31 H 0 1 N N N N N N -38.105 90.940 -30.366 -3.675 4.096 -1.957 H31 A1JJ3 99 A1JJ3 H32 H32 H 0 1 N N N N N N -38.850 89.705 -31.437 -3.065 5.768 -1.955 H32 A1JJ3 100 A1JJ3 H33 H33 H 0 1 N N N N N N -35.190 90.175 -30.637 -1.834 3.164 1.203 H33 A1JJ3 101 A1JJ3 H34 H34 H 0 1 N N N N N N -34.840 91.096 -32.138 -2.770 2.490 -0.153 H34 A1JJ3 102 A1JJ3 H35 H35 H 0 1 N N N N N N -35.852 91.831 -30.849 -1.104 3.059 -0.417 H35 A1JJ3 103 A1JJ3 H36 H36 H 0 1 N N N N N N -36.565 91.505 -33.817 -3.661 4.809 1.647 H36 A1JJ3 104 A1JJ3 H37 H37 H 0 1 N N N N N N -37.357 92.382 -32.464 -4.233 5.877 0.343 H37 A1JJ3 105 A1JJ3 H38 H38 H 0 1 N N N N N N -41.107 91.343 -35.282 -5.813 2.688 2.599 H38 A1JJ3 106 A1JJ3 H39 H39 H 0 1 N N N N N N -39.125 87.553 -35.461 -8.939 3.239 -2.111 H39 A1JJ3 107 A1JJ3 H40 H40 H 0 1 N N N N N N -36.473 89.638 -38.875 -10.790 0.373 0.362 H40 A1JJ3 108 A1JJ3 H41 H41 H 0 1 N N N N N N -37.114 91.022 -37.926 -10.841 0.819 -1.360 H41 A1JJ3 109 A1JJ3 H42 H42 H 0 1 N N N N N N -38.845 91.427 -39.529 -9.519 -1.266 -1.880 H42 A1JJ3 110 A1JJ3 H43 H43 H 0 1 N N N N N N -37.785 91.548 -42.562 -9.646 -3.846 -0.684 H43 A1JJ3 111 A1JJ3 H44 H44 H 0 1 N N N N N N -34.435 90.676 -40.841 -9.547 -2.162 2.699 H44 A1JJ3 112 A1JJ3 H45 H45 H 0 1 N N N N N N -32.061 93.332 -45.852 -9.441 -6.070 5.539 H45 A1JJ3 113 A1JJ3 H46 H46 H 0 1 N N N N N N -31.902 93.392 -44.228 -9.648 -7.725 5.332 H46 A1JJ3 114 A1JJ3 H47 H47 H 0 1 N N N N N N -36.289 93.013 -46.523 -10.483 -8.347 0.893 H47 A1JJ3 115 A1JJ3 H48 H48 H 0 1 N N N N N N -36.762 88.896 -41.467 -12.121 -2.668 0.698 H48 A1JJ3 116 A1JJ3 H49 H49 H 0 1 N N N N N N -38.212 88.329 -43.228 -12.187 -4.901 -0.235 H49 A1JJ3 117 A1JJ3 H50 H50 H 0 1 N N N N N N -38.885 88.776 -40.321 -12.298 -1.064 -1.015 H50 A1JJ3 118 A1JJ3 H51 H51 H 0 1 N N N N N N -41.938 88.014 -40.580 -13.182 -2.218 -5.686 H51 A1JJ3 119 A1JJ3 H52 H52 H 0 1 N N N N N N -42.584 91.154 -42.211 -14.295 -3.252 -2.919 H52 A1JJ3 120 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JJ3 N6 C35 SING Y N 1 A1JJ3 N6 C34 DOUB Y N 2 A1JJ3 C35 N7 DOUB Y N 3 A1JJ3 N5 C34 SING N N 4 A1JJ3 C34 C33 SING Y N 5 A1JJ3 N7 C36 SING Y N 6 A1JJ3 C33 C36 DOUB Y N 7 A1JJ3 C33 N4 SING Y N 8 A1JJ3 C36 N3 SING Y N 9 A1JJ3 O14 C37 SING N N 10 A1JJ3 O18 P3 DOUB N N 11 A1JJ3 N4 C32 DOUB Y N 12 A1JJ3 N3 C31 SING N N 13 A1JJ3 N3 C32 SING Y N 14 A1JJ3 C31 C37 SING N N 15 A1JJ3 C31 O13 SING N N 16 A1JJ3 C37 C38 SING N N 17 A1JJ3 O17 P3 SING N N 18 A1JJ3 O15 P3 SING N N 19 A1JJ3 O15 C38 SING N N 20 A1JJ3 P3 O16 SING N N 21 A1JJ3 C38 C30 SING N N 22 A1JJ3 O13 C30 SING N N 23 A1JJ3 C30 C29 SING N N 24 A1JJ3 C29 O12 SING N N 25 A1JJ3 O12 P2 SING N N 26 A1JJ3 P2 O11 DOUB N N 27 A1JJ3 P2 O9 SING N N 28 A1JJ3 P2 O10 SING N N 29 A1JJ3 O9 P1 SING N N 30 A1JJ3 O8 P1 DOUB N N 31 A1JJ3 O7 P1 SING N N 32 A1JJ3 P1 O6 SING N N 33 A1JJ3 O5 C24 SING N N 34 A1JJ3 O6 C28 SING N N 35 A1JJ3 C28 C25 SING N N 36 A1JJ3 C24 C25 SING N N 37 A1JJ3 C24 C23 SING N N 38 A1JJ3 N2 C23 SING N N 39 A1JJ3 N2 C22 SING N N 40 A1JJ3 C25 C27 SING N N 41 A1JJ3 C25 C26 SING N N 42 A1JJ3 C23 O4 DOUB N N 43 A1JJ3 C22 C21 SING N N 44 A1JJ3 O3 C20 DOUB N N 45 A1JJ3 C14 C15 DOUB Y N 46 A1JJ3 C14 C13 SING Y N 47 A1JJ3 C15 C10 SING Y N 48 A1JJ3 C13 C12 DOUB Y N 49 A1JJ3 C21 C20 SING N N 50 A1JJ3 C20 N1 SING N N 51 A1JJ3 C10 C9 SING N N 52 A1JJ3 C10 C11 DOUB Y N 53 A1JJ3 C12 C11 SING Y N 54 A1JJ3 C9 C8 SING N N 55 A1JJ3 N1 C19 SING N N 56 A1JJ3 C18 C19 SING N N 57 A1JJ3 C18 S2 SING N N 58 A1JJ3 C8 O1 SING N N 59 A1JJ3 C5 C6 DOUB Y N 60 A1JJ3 C5 C4 SING Y N 61 A1JJ3 C6 C7 SING Y N 62 A1JJ3 S2 C17 SING N N 63 A1JJ3 C4 C3 DOUB Y N 64 A1JJ3 C7 O1 SING N N 65 A1JJ3 C7 C16 DOUB Y N 66 A1JJ3 C3 C16 SING Y N 67 A1JJ3 C3 S1 SING N N 68 A1JJ3 S1 C2 SING N N 69 A1JJ3 C17 C2 SING N N 70 A1JJ3 C17 O2 DOUB N N 71 A1JJ3 C2 C1 SING N N 72 A1JJ3 C4 H1 SING N N 73 A1JJ3 C14 H2 SING N N 74 A1JJ3 C5 H3 SING N N 75 A1JJ3 C6 H4 SING N N 76 A1JJ3 C11 H5 SING N N 77 A1JJ3 C8 H6 SING N N 78 A1JJ3 C8 H7 SING N N 79 A1JJ3 C9 H8 SING N N 80 A1JJ3 C9 H9 SING N N 81 A1JJ3 C12 H10 SING N N 82 A1JJ3 C13 H11 SING N N 83 A1JJ3 N1 H12 SING N N 84 A1JJ3 N2 H13 SING N N 85 A1JJ3 C1 H14 SING N N 86 A1JJ3 C1 H15 SING N N 87 A1JJ3 C1 H16 SING N N 88 A1JJ3 C2 H17 SING N N 89 A1JJ3 C15 H18 SING N N 90 A1JJ3 C16 H19 SING N N 91 A1JJ3 C18 H20 SING N N 92 A1JJ3 C18 H21 SING N N 93 A1JJ3 C19 H22 SING N N 94 A1JJ3 C19 H23 SING N N 95 A1JJ3 C21 H24 SING N N 96 A1JJ3 C21 H25 SING N N 97 A1JJ3 C22 H26 SING N N 98 A1JJ3 C22 H27 SING N N 99 A1JJ3 C24 H28 SING N N 100 A1JJ3 O5 H29 SING N N 101 A1JJ3 C26 H30 SING N N 102 A1JJ3 C26 H31 SING N N 103 A1JJ3 C26 H32 SING N N 104 A1JJ3 C27 H33 SING N N 105 A1JJ3 C27 H34 SING N N 106 A1JJ3 C27 H35 SING N N 107 A1JJ3 C28 H36 SING N N 108 A1JJ3 C28 H37 SING N N 109 A1JJ3 O7 H38 SING N N 110 A1JJ3 O10 H39 SING N N 111 A1JJ3 C29 H40 SING N N 112 A1JJ3 C29 H41 SING N N 113 A1JJ3 C30 H42 SING N N 114 A1JJ3 C31 H43 SING N N 115 A1JJ3 C32 H44 SING N N 116 A1JJ3 N5 H45 SING N N 117 A1JJ3 N5 H46 SING N N 118 A1JJ3 C35 H47 SING N N 119 A1JJ3 C37 H48 SING N N 120 A1JJ3 O14 H49 SING N N 121 A1JJ3 C38 H50 SING N N 122 A1JJ3 O16 H51 SING N N 123 A1JJ3 O17 H52 SING N N 124 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JJ3 InChI InChI 1.06 "InChI=1S/C38H52N7O18P3S2/c1-23(68-26-11-7-10-25(18-26)58-16-13-24-8-5-4-6-9-24)37(50)67-17-15-40-28(46)12-14-41-35(49)32(48)38(2,3)20-60-66(56,57)63-65(54,55)59-19-27-31(62-64(51,52)53)30(47)36(61-27)45-22-44-29-33(39)42-21-43-34(29)45/h4-11,18,21-23,27,30-32,36,47-48H,12-17,19-20H2,1-3H3,(H,40,46)(H,41,49)(H,54,55)(H,56,57)(H2,39,42,43)(H2,51,52,53)/t23-,27-,30-,31-,32+,36-/m1/s1" A1JJ3 InChIKey InChI 1.06 GSZUMIYPLBWNBH-JUIOOPGCSA-N A1JJ3 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](Sc1cccc(OCCc2ccccc2)c1)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O[P](O)(O)=O)n4cnc5c(N)ncnc45" A1JJ3 SMILES CACTVS 3.385 "C[CH](Sc1cccc(OCCc2ccccc2)c1)C(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O[P](O)(O)=O)n4cnc5c(N)ncnc45" A1JJ3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)Sc4cccc(c4)OCCc5ccccc5" A1JJ3 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)Sc4cccc(c4)OCCc5ccccc5" # _pdbx_chem_comp_identifier.comp_id A1JJ3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-[3-(2-phenylethoxy)phenyl]sulfanylpropanethioate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JJ3 "Create component" 2025-07-16 PDBE A1JJ3 "Initial release" 2026-07-29 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1JJ3 _pdbx_chem_comp_synonyms.name "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-[3-(2-phenylethoxy)phenyl]sulfanylpropanethioate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #