data_A1JJ4 # _chem_comp.id A1JJ4 _chem_comp.name "2-(3-(2-(3-Trifluoromethylphenyl)ethoxy)phenylthiol)propanoyl-CoA" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C39 H51 F3 N7 O18 P3 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-[3-[2-[3-(trifluoromethyl)phenyl]ethoxy]phenyl]sulfanylpropanethioate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-07-16 _chem_comp.pdbx_modified_date 2026-07-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1119.905 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JJ4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RZ7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JJ4 C4 C1 C 0 1 Y N N N N N -31.686 95.068 -27.918 13.781 3.105 1.320 C4 A1JJ4 1 A1JJ4 C14 C2 C 0 1 Y N N N N N -25.978 101.067 -29.664 18.654 -4.400 -0.159 C14 A1JJ4 2 A1JJ4 C5 C3 C 0 1 Y N N N N N -32.323 96.134 -28.527 15.030 2.539 1.153 C5 A1JJ4 3 A1JJ4 C6 C4 C 0 1 Y N N N N N -31.973 97.435 -28.232 15.185 1.167 1.228 C6 A1JJ4 4 A1JJ4 C11 C5 C 0 1 Y N N N N N -26.846 98.458 -29.371 17.769 -3.733 2.374 C11 A1JJ4 5 A1JJ4 C7 C6 C 0 1 Y N N N N N -30.963 97.681 -27.308 14.086 0.354 1.471 C7 A1JJ4 6 A1JJ4 C8 C7 C 0 1 N N N N N N -29.447 99.568 -27.444 15.563 -1.506 1.361 C8 A1JJ4 7 A1JJ4 C9 C8 C 0 1 N N N N N N -29.205 99.246 -28.894 15.539 -3.031 1.477 C9 A1JJ4 8 A1JJ4 C10 C9 C 0 1 Y N N N N N -27.760 99.498 -29.233 16.933 -3.571 1.284 C10 A1JJ4 9 A1JJ4 C12 C10 C 0 1 Y N N N N N -25.516 98.716 -29.655 19.047 -4.228 2.197 C12 A1JJ4 10 A1JJ4 C13 C11 C 0 1 Y N N N N N -25.073 100.021 -29.799 19.490 -4.561 0.930 C13 A1JJ4 11 A1JJ4 N1 N1 N 0 1 N N N N N N -33.783 88.146 -28.655 3.902 3.866 -0.866 N1 A1JJ4 12 A1JJ4 N2 N2 N 0 1 N N N N N N -34.958 86.877 -32.001 -0.898 4.656 -1.511 N2 A1JJ4 13 A1JJ4 C3 C12 C 0 1 Y N N N N N -30.666 95.297 -26.999 12.677 2.296 1.564 C3 A1JJ4 14 A1JJ4 N3 N3 N 0 1 Y N N N N N -35.687 90.829 -42.451 -10.300 -4.282 -0.583 N3 A1JJ4 15 A1JJ4 C1 C13 C 0 1 N N N N N N -31.091 92.829 -23.909 11.113 3.812 -0.833 C1 A1JJ4 16 A1JJ4 C2 C14 C 0 1 N N R N N N -31.266 92.903 -25.413 10.351 2.900 0.130 C2 A1JJ4 17 A1JJ4 S1 S1 S 0 1 N N N N N N -29.932 93.841 -26.279 11.085 3.019 1.785 S1 A1JJ4 18 A1JJ4 O1 O1 O 0 1 N N N N N N -30.715 99.013 -27.061 14.241 -0.994 1.544 O1 A1JJ4 19 A1JJ4 C15 C15 C 0 1 N N N N N N -25.523 102.483 -29.820 19.134 -4.770 -1.539 C15 A1JJ4 20 A1JJ4 F1 F1 F 0 1 N N N N N N -24.273 102.642 -29.433 19.734 -3.657 -2.138 F1 A1JJ4 21 A1JJ4 F2 F2 F 0 1 N N N N N N -25.630 102.937 -31.072 20.067 -5.809 -1.445 F2 A1JJ4 22 A1JJ4 F3 F3 F 0 1 N N N N N N -26.212 103.337 -29.075 18.047 -5.188 -2.314 F3 A1JJ4 23 A1JJ4 C16 C16 C 0 1 Y N N N N N -27.308 100.800 -29.375 17.375 -3.905 0.018 C16 A1JJ4 24 A1JJ4 C17 C17 C 0 1 Y N N N N N -30.312 96.617 -26.683 12.832 0.918 1.640 C17 A1JJ4 25 A1JJ4 C18 C18 C 0 1 N N N N N N -31.478 91.498 -25.955 8.907 3.328 0.190 C18 A1JJ4 26 A1JJ4 O2 O2 O 0 1 N N N N N N -31.910 90.552 -25.294 8.533 4.080 1.065 O2 A1JJ4 27 A1JJ4 S2 S2 S 0 1 N N N N N N -31.151 91.266 -27.660 7.795 2.751 -0.977 S2 A1JJ4 28 A1JJ4 C19 C19 C 0 1 N N N N N N -31.863 89.592 -27.911 6.287 3.575 -0.408 C19 A1JJ4 29 A1JJ4 C20 C20 C 0 1 N N N N N N -33.346 89.513 -28.330 5.122 3.198 -1.326 C20 A1JJ4 30 A1JJ4 C21 C21 C 0 1 N N N N N N -33.338 87.502 -29.747 2.742 3.680 -1.527 C21 A1JJ4 31 A1JJ4 O3 O3 O 0 1 N N N N N N -32.561 88.037 -30.555 2.709 2.960 -2.502 O3 A1JJ4 32 A1JJ4 C22 C22 C 0 1 N N N N N N -33.805 86.080 -29.935 1.487 4.366 -1.053 C22 A1JJ4 33 A1JJ4 C23 C23 C 0 1 N N N N N N -34.313 85.751 -31.333 0.322 3.989 -1.971 C23 A1JJ4 34 A1JJ4 C24 C24 C 0 1 N N N N N N -36.210 87.282 -31.756 -2.058 4.470 -2.171 C24 A1JJ4 35 A1JJ4 O4 O4 O 0 1 N N N N N N -36.960 86.769 -30.891 -2.074 3.828 -3.200 O4 A1JJ4 36 A1JJ4 C25 C25 C 0 1 N N R N N N -36.699 88.447 -32.620 -3.335 5.061 -1.632 C25 A1JJ4 37 A1JJ4 O5 O5 O 0 1 N N N N N N -35.720 88.873 -33.574 -3.038 5.899 -0.514 O5 A1JJ4 38 A1JJ4 C26 C26 C 0 1 N N N N N N -37.079 89.723 -31.806 -4.271 3.934 -1.190 C26 A1JJ4 39 A1JJ4 C27 C27 C 0 1 N N N N N N -35.839 90.619 -31.659 -4.642 3.074 -2.400 C27 A1JJ4 40 A1JJ4 C28 C28 C 0 1 N N N N N N -37.676 89.380 -30.439 -3.567 3.066 -0.145 C28 A1JJ4 41 A1JJ4 C29 C29 C 0 1 N N N N N N -38.226 90.481 -32.455 -5.541 4.534 -0.583 C29 A1JJ4 42 A1JJ4 O6 O6 O 0 1 N N N N N N -37.843 91.025 -33.724 -6.415 3.482 -0.170 O6 A1JJ4 43 A1JJ4 P1 P1 P 0 1 N N N N N N -38.894 91.130 -34.929 -7.847 3.749 0.514 P1 A1JJ4 44 A1JJ4 O7 O7 O 0 1 N N N N N N -38.653 92.538 -35.337 -8.657 4.624 -0.363 O7 A1JJ4 45 A1JJ4 O8 O8 O 0 1 N N N N N N -40.182 90.418 -34.713 -7.636 4.467 1.940 O8 A1JJ4 46 A1JJ4 O9 O9 O 0 1 N N N N N N -38.162 90.190 -35.997 -8.611 2.348 0.727 O9 A1JJ4 47 A1JJ4 P2 P2 P 0 1 N N N N N N -38.282 88.629 -36.259 -10.150 1.936 0.955 P2 A1JJ4 48 A1JJ4 O10 O10 O 0 1 N N N N N N -39.493 87.881 -35.817 -11.006 2.680 0.004 O10 A1JJ4 49 A1JJ4 O11 O11 O 0 1 N N N N N N -37.047 87.946 -35.786 -10.584 2.298 2.463 O11 A1JJ4 50 A1JJ4 O12 O12 O 0 1 N N N N N N -38.202 88.755 -37.855 -10.325 0.355 0.711 O12 A1JJ4 51 A1JJ4 C30 C30 C 0 1 N N N N N N -37.803 90.016 -38.457 -11.594 -0.301 0.736 C30 A1JJ4 52 A1JJ4 C31 C31 C 0 1 N N S N N N -37.485 89.777 -39.919 -11.402 -1.795 0.468 C31 A1JJ4 53 A1JJ4 O13 O13 O 0 1 N N N N N N -37.070 91.002 -40.560 -10.967 -2.010 -0.893 O13 A1JJ4 54 A1JJ4 C32 C32 C 0 1 N N R N N N -37.060 90.704 -41.965 -11.292 -3.387 -1.184 C32 A1JJ4 55 A1JJ4 C33 C33 C 0 1 Y N N N N N -34.497 90.555 -41.823 -9.442 -3.972 0.430 C33 A1JJ4 56 A1JJ4 N4 N4 N 0 1 Y N N N N N -33.442 90.898 -42.521 -8.700 -5.003 0.715 N4 A1JJ4 57 A1JJ4 C34 C34 C 0 1 Y N N N N N -33.974 91.465 -43.665 -9.035 -6.037 -0.094 C34 A1JJ4 58 A1JJ4 C35 C35 C 0 1 Y N N N N N -33.374 92.032 -44.794 -8.591 -7.363 -0.239 C35 A1JJ4 59 A1JJ4 N5 N5 N 0 1 N N N N N N -32.059 92.171 -44.939 -7.575 -7.860 0.559 N5 A1JJ4 60 A1JJ4 N6 N6 N 0 1 Y N N N N N -34.197 92.534 -45.747 -9.169 -8.127 -1.159 N6 A1JJ4 61 A1JJ4 C36 C36 C 0 1 Y N N N N N -35.518 92.418 -45.590 -10.139 -7.661 -1.924 C36 A1JJ4 62 A1JJ4 N7 N7 N 0 1 Y N N N N N -36.191 91.888 -44.580 -10.587 -6.427 -1.825 N7 A1JJ4 63 A1JJ4 C37 C37 C 0 1 Y N N N N N -35.355 91.430 -43.636 -10.069 -5.589 -0.933 C37 A1JJ4 64 A1JJ4 C38 C38 C 0 1 N N R N N N -37.745 89.358 -42.189 -12.678 -3.610 -0.539 C38 A1JJ4 65 A1JJ4 O14 O14 O 0 1 N N N N N N -38.560 89.467 -43.336 -13.716 -3.406 -1.500 O14 A1JJ4 66 A1JJ4 C39 C39 C 0 1 N N S N N N -38.546 89.236 -40.893 -12.752 -2.539 0.575 C39 A1JJ4 67 A1JJ4 O15 O15 O 0 1 N N N N N N -39.753 90.014 -40.997 -13.837 -1.641 0.335 O15 A1JJ4 68 A1JJ4 P3 P3 P 0 1 N N N N N N -41.227 89.395 -41.306 -15.038 -1.417 1.384 P3 A1JJ4 69 A1JJ4 O16 O16 O 0 1 N N N N N N -42.117 90.628 -41.308 -14.459 -0.749 2.729 O16 A1JJ4 70 A1JJ4 O17 O17 O 0 1 N N N N N N -41.643 88.415 -40.220 -16.143 -0.444 0.734 O17 A1JJ4 71 A1JJ4 O18 O18 O 0 1 N N N N N N -41.188 88.556 -42.574 -15.659 -2.721 1.708 O18 A1JJ4 72 A1JJ4 H1 H1 H 0 1 N N N N N N -31.980 94.057 -28.156 13.663 4.177 1.265 H1 A1JJ4 73 A1JJ4 H2 H2 H 0 1 N N N N N N -33.107 95.945 -29.245 15.886 3.168 0.962 H2 A1JJ4 74 A1JJ4 H3 H3 H 0 1 N N N N N N -32.480 98.257 -28.715 16.163 0.728 1.096 H3 A1JJ4 75 A1JJ4 H4 H4 H 0 1 N N N N N N -27.178 97.437 -29.255 17.423 -3.471 3.363 H4 A1JJ4 76 A1JJ4 H5 H5 H 0 1 N N N N N N -28.648 99.129 -26.828 16.221 -1.094 2.125 H5 A1JJ4 77 A1JJ4 H6 H6 H 0 1 N N N N N N -29.461 100.659 -27.303 15.929 -1.222 0.375 H6 A1JJ4 78 A1JJ4 H7 H7 H 0 1 N N N N N N -29.845 99.883 -29.522 15.173 -3.315 2.464 H7 A1JJ4 79 A1JJ4 H8 H8 H 0 1 N N N N N N -29.445 98.189 -29.079 14.880 -3.444 0.713 H8 A1JJ4 80 A1JJ4 H9 H9 H 0 1 N N N N N N -24.821 97.897 -29.765 19.700 -4.354 3.047 H9 A1JJ4 81 A1JJ4 H10 H10 H 0 1 N N N N N N -24.034 100.223 -30.014 20.488 -4.948 0.791 H10 A1JJ4 82 A1JJ4 H11 H11 H 0 1 N N N N N N -34.428 87.684 -28.047 3.929 4.441 -0.086 H11 A1JJ4 83 A1JJ4 H12 H12 H 0 1 N N N N N N -34.430 87.379 -32.686 -0.871 5.232 -0.731 H12 A1JJ4 84 A1JJ4 H13 H13 H 0 1 N N N N N N -31.922 92.257 -23.470 12.171 3.551 -0.820 H13 A1JJ4 85 A1JJ4 H14 H14 H 0 1 N N N N N N -30.139 92.330 -23.675 10.720 3.685 -1.842 H14 A1JJ4 86 A1JJ4 H15 H15 H 0 1 N N N N N N -31.085 93.846 -23.490 10.991 4.850 -0.524 H15 A1JJ4 87 A1JJ4 H16 H16 H 0 1 N N N N N N -32.181 93.479 -25.615 10.411 1.870 -0.221 H16 A1JJ4 88 A1JJ4 H17 H17 H 0 1 N N N N N N -28.002 101.619 -29.259 16.722 -3.779 -0.833 H17 A1JJ4 89 A1JJ4 H18 H18 H 0 1 N N N N N N -29.536 96.809 -25.957 11.976 0.287 1.829 H18 A1JJ4 90 A1JJ4 H19 H19 H 0 1 N N N N N N -31.757 89.042 -26.965 6.063 3.260 0.611 H19 A1JJ4 91 A1JJ4 H20 H20 H 0 1 N N N N N N -31.271 89.094 -28.693 6.433 4.655 -0.431 H20 A1JJ4 92 A1JJ4 H21 H21 H 0 1 N N N N N N -33.493 90.147 -29.216 4.977 2.118 -1.303 H21 A1JJ4 93 A1JJ4 H22 H22 H 0 1 N N N N N N -33.964 89.890 -27.502 5.346 3.513 -2.345 H22 A1JJ4 94 A1JJ4 H23 H23 H 0 1 N N N N N N -34.621 85.891 -29.222 1.263 4.051 -0.034 H23 A1JJ4 95 A1JJ4 H24 H24 H 0 1 N N N N N N -32.961 85.411 -29.712 1.633 5.446 -1.076 H24 A1JJ4 96 A1JJ4 H25 H25 H 0 1 N N N N N N -35.041 84.930 -31.254 0.177 2.909 -1.948 H25 A1JJ4 97 A1JJ4 H26 H26 H 0 1 N N N N N N -33.459 85.426 -31.946 0.546 4.304 -2.990 H26 A1JJ4 98 A1JJ4 H27 H27 H 0 1 N N N N N N -37.601 88.115 -33.154 -3.819 5.651 -2.410 H27 A1JJ4 99 A1JJ4 H28 H28 H 0 1 N N N N N N -35.449 88.132 -34.103 -2.605 5.439 0.218 H28 A1JJ4 100 A1JJ4 H29 H29 H 0 1 N N N N N N -36.103 91.520 -31.086 -3.762 2.529 -2.742 H29 A1JJ4 101 A1JJ4 H30 H30 H 0 1 N N N N N N -35.048 90.067 -31.130 -5.421 2.366 -2.118 H30 A1JJ4 102 A1JJ4 H31 H31 H 0 1 N N N N N N -35.478 90.912 -32.656 -5.007 3.715 -3.203 H31 A1JJ4 103 A1JJ4 H32 H32 H 0 1 N N N N N N -37.927 90.308 -29.905 -3.303 3.679 0.717 H32 A1JJ4 104 A1JJ4 H33 H33 H 0 1 N N N N N N -38.587 88.779 -30.577 -4.233 2.264 0.170 H33 A1JJ4 105 A1JJ4 H34 H34 H 0 1 N N N N N N -36.943 88.806 -29.853 -2.662 2.639 -0.578 H34 A1JJ4 106 A1JJ4 H35 H35 H 0 1 N N N N N N -38.532 91.303 -31.791 -5.277 5.147 0.279 H35 A1JJ4 107 A1JJ4 H36 H36 H 0 1 N N N N N N -39.072 89.793 -32.601 -6.043 5.152 -1.327 H36 A1JJ4 108 A1JJ4 H37 H37 H 0 1 N N N N N N -40.904 91.012 -34.878 -7.113 3.949 2.567 H37 A1JJ4 109 A1JJ4 H38 H38 H 0 1 N N N N N N -37.283 87.167 -35.296 -10.064 1.845 3.141 H38 A1JJ4 110 A1JJ4 H39 H39 H 0 1 N N N N N N -36.912 90.406 -37.943 -12.055 -0.164 1.714 H39 A1JJ4 111 A1JJ4 H40 H40 H 0 1 N N N N N N -38.624 90.743 -38.371 -12.239 0.126 -0.032 H40 A1JJ4 112 A1JJ4 H41 H41 H 0 1 N N N N N N -36.638 89.076 -39.953 -10.680 -2.216 1.168 H41 A1JJ4 113 A1JJ4 H42 H42 H 0 1 N N N N N N -37.668 91.463 -42.479 -11.342 -3.545 -2.261 H42 A1JJ4 114 A1JJ4 H43 H43 H 0 1 N N N N N N -34.436 90.100 -40.846 -9.385 -3.013 0.922 H43 A1JJ4 115 A1JJ4 H44 H44 H 0 1 N N N N N N -31.867 92.660 -45.790 -7.161 -7.292 1.227 H44 A1JJ4 116 A1JJ4 H45 H45 H 0 1 N N N N N N -31.692 92.689 -44.167 -7.278 -8.777 0.450 H45 A1JJ4 117 A1JJ4 H46 H46 H 0 1 N N N N N N -36.120 92.810 -46.397 -10.582 -8.316 -2.660 H46 A1JJ4 118 A1JJ4 H47 H47 H 0 1 N N N N N N -37.004 88.549 -42.270 -12.743 -4.610 -0.111 H47 A1JJ4 119 A1JJ4 H48 H48 H 0 1 N N N N N N -39.440 89.175 -43.129 -13.680 -4.014 -2.252 H48 A1JJ4 120 A1JJ4 H49 H49 H 0 1 N N N N N N -38.761 88.180 -40.673 -12.854 -3.011 1.552 H49 A1JJ4 121 A1JJ4 H50 H50 H 0 1 N N N N N N -42.549 90.706 -42.150 -14.037 0.110 2.591 H50 A1JJ4 122 A1JJ4 H51 H51 H 0 1 N N N N N N -41.768 87.554 -40.601 -16.898 -0.264 1.311 H51 A1JJ4 123 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JJ4 N6 C36 SING Y N 1 A1JJ4 N6 C35 DOUB Y N 2 A1JJ4 C36 N7 DOUB Y N 3 A1JJ4 N5 C35 SING N N 4 A1JJ4 C35 C34 SING Y N 5 A1JJ4 N7 C37 SING Y N 6 A1JJ4 C34 C37 DOUB Y N 7 A1JJ4 C34 N4 SING Y N 8 A1JJ4 C37 N3 SING Y N 9 A1JJ4 O14 C38 SING N N 10 A1JJ4 O18 P3 DOUB N N 11 A1JJ4 N4 C33 DOUB Y N 12 A1JJ4 N3 C32 SING N N 13 A1JJ4 N3 C33 SING Y N 14 A1JJ4 C38 C32 SING N N 15 A1JJ4 C38 C39 SING N N 16 A1JJ4 C32 O13 SING N N 17 A1JJ4 O16 P3 SING N N 18 A1JJ4 P3 O15 SING N N 19 A1JJ4 P3 O17 SING N N 20 A1JJ4 O15 C39 SING N N 21 A1JJ4 C39 C31 SING N N 22 A1JJ4 O13 C31 SING N N 23 A1JJ4 C31 C30 SING N N 24 A1JJ4 C30 O12 SING N N 25 A1JJ4 O12 P2 SING N N 26 A1JJ4 P2 O9 SING N N 27 A1JJ4 P2 O10 DOUB N N 28 A1JJ4 P2 O11 SING N N 29 A1JJ4 O9 P1 SING N N 30 A1JJ4 O7 P1 DOUB N N 31 A1JJ4 P1 O8 SING N N 32 A1JJ4 P1 O6 SING N N 33 A1JJ4 O6 C29 SING N N 34 A1JJ4 O5 C25 SING N N 35 A1JJ4 C25 C26 SING N N 36 A1JJ4 C25 C24 SING N N 37 A1JJ4 C29 C26 SING N N 38 A1JJ4 N2 C24 SING N N 39 A1JJ4 N2 C23 SING N N 40 A1JJ4 C26 C27 SING N N 41 A1JJ4 C26 C28 SING N N 42 A1JJ4 C24 O4 DOUB N N 43 A1JJ4 C23 C22 SING N N 44 A1JJ4 F2 C15 SING N N 45 A1JJ4 O3 C21 DOUB N N 46 A1JJ4 C22 C21 SING N N 47 A1JJ4 C15 C14 SING N N 48 A1JJ4 C15 F1 SING N N 49 A1JJ4 C15 F3 SING N N 50 A1JJ4 C13 C14 DOUB Y N 51 A1JJ4 C13 C12 SING Y N 52 A1JJ4 C21 N1 SING N N 53 A1JJ4 C14 C16 SING Y N 54 A1JJ4 C12 C11 DOUB Y N 55 A1JJ4 C16 C10 DOUB Y N 56 A1JJ4 C11 C10 SING Y N 57 A1JJ4 C10 C9 SING N N 58 A1JJ4 C9 C8 SING N N 59 A1JJ4 N1 C20 SING N N 60 A1JJ4 C5 C6 DOUB Y N 61 A1JJ4 C5 C4 SING Y N 62 A1JJ4 C20 C19 SING N N 63 A1JJ4 C6 C7 SING Y N 64 A1JJ4 C4 C3 DOUB Y N 65 A1JJ4 C19 S2 SING N N 66 A1JJ4 S2 C18 SING N N 67 A1JJ4 C8 O1 SING N N 68 A1JJ4 C7 O1 SING N N 69 A1JJ4 C7 C17 DOUB Y N 70 A1JJ4 C3 C17 SING Y N 71 A1JJ4 C3 S1 SING N N 72 A1JJ4 S1 C2 SING N N 73 A1JJ4 C18 C2 SING N N 74 A1JJ4 C18 O2 DOUB N N 75 A1JJ4 C2 C1 SING N N 76 A1JJ4 C4 H1 SING N N 77 A1JJ4 C5 H2 SING N N 78 A1JJ4 C6 H3 SING N N 79 A1JJ4 C11 H4 SING N N 80 A1JJ4 C8 H5 SING N N 81 A1JJ4 C8 H6 SING N N 82 A1JJ4 C9 H7 SING N N 83 A1JJ4 C9 H8 SING N N 84 A1JJ4 C12 H9 SING N N 85 A1JJ4 C13 H10 SING N N 86 A1JJ4 N1 H11 SING N N 87 A1JJ4 N2 H12 SING N N 88 A1JJ4 C1 H13 SING N N 89 A1JJ4 C1 H14 SING N N 90 A1JJ4 C1 H15 SING N N 91 A1JJ4 C2 H16 SING N N 92 A1JJ4 C16 H17 SING N N 93 A1JJ4 C17 H18 SING N N 94 A1JJ4 C19 H19 SING N N 95 A1JJ4 C19 H20 SING N N 96 A1JJ4 C20 H21 SING N N 97 A1JJ4 C20 H22 SING N N 98 A1JJ4 C22 H23 SING N N 99 A1JJ4 C22 H24 SING N N 100 A1JJ4 C23 H25 SING N N 101 A1JJ4 C23 H26 SING N N 102 A1JJ4 C25 H27 SING N N 103 A1JJ4 O5 H28 SING N N 104 A1JJ4 C27 H29 SING N N 105 A1JJ4 C27 H30 SING N N 106 A1JJ4 C27 H31 SING N N 107 A1JJ4 C28 H32 SING N N 108 A1JJ4 C28 H33 SING N N 109 A1JJ4 C28 H34 SING N N 110 A1JJ4 C29 H35 SING N N 111 A1JJ4 C29 H36 SING N N 112 A1JJ4 O8 H37 SING N N 113 A1JJ4 O11 H38 SING N N 114 A1JJ4 C30 H39 SING N N 115 A1JJ4 C30 H40 SING N N 116 A1JJ4 C31 H41 SING N N 117 A1JJ4 C32 H42 SING N N 118 A1JJ4 C33 H43 SING N N 119 A1JJ4 N5 H44 SING N N 120 A1JJ4 N5 H45 SING N N 121 A1JJ4 C36 H46 SING N N 122 A1JJ4 C38 H47 SING N N 123 A1JJ4 O14 H48 SING N N 124 A1JJ4 C39 H49 SING N N 125 A1JJ4 O16 H50 SING N N 126 A1JJ4 O17 H51 SING N N 127 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JJ4 InChI InChI 1.06 "InChI=1S/C39H51F3N7O18P3S2/c1-22(72-26-9-5-8-25(17-26)62-14-11-23-6-4-7-24(16-23)39(40,41)42)37(54)71-15-13-44-28(50)10-12-45-35(53)32(52)38(2,3)19-64-70(60,61)67-69(58,59)63-18-27-31(66-68(55,56)57)30(51)36(65-27)49-21-48-29-33(43)46-20-47-34(29)49/h4-9,16-17,20-22,27,30-32,36,51-52H,10-15,18-19H2,1-3H3,(H,44,50)(H,45,53)(H,58,59)(H,60,61)(H2,43,46,47)(H2,55,56,57)/t22-,27+,30-,31-,32+,36-/m1/s1" A1JJ4 InChIKey InChI 1.06 HFKRXRJDRGXVNM-MOFGHCPVSA-N A1JJ4 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](Sc1cccc(OCCc2cccc(c2)C(F)(F)F)c1)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[C@@H]3O[C@H]([C@H](O)[C@@H]3O[P](O)(O)=O)n4cnc5c(N)ncnc45" A1JJ4 SMILES CACTVS 3.385 "C[CH](Sc1cccc(OCCc2cccc(c2)C(F)(F)F)c1)C(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O[P](O)(O)=O)n4cnc5c(N)ncnc45" A1JJ4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)Sc4cccc(c4)OCCc5cccc(c5)C(F)(F)F" A1JJ4 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)Sc4cccc(c4)OCCc5cccc(c5)C(F)(F)F" # _pdbx_chem_comp_identifier.comp_id A1JJ4 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-[3-[2-[3-(trifluoromethyl)phenyl]ethoxy]phenyl]sulfanylpropanethioate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JJ4 "Create component" 2025-07-16 PDBE A1JJ4 "Initial release" 2026-07-29 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1JJ4 _pdbx_chem_comp_synonyms.name "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-[3-[2-[3-(trifluoromethyl)phenyl]ethoxy]phenyl]sulfanylpropanethioate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #