data_A1JJ5 # _chem_comp.id A1JJ5 _chem_comp.name "2-(3-(2-(3-Methoxyphenyl)ethoxy)phenylthiol)propanoyl-CoA" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C39 H54 N7 O19 P3 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-[3-[2-(3-methoxyphenyl)ethoxy]phenyl]sulfanylpropanethioate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-07-16 _chem_comp.pdbx_modified_date 2026-07-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1081.933 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JJ5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RZ8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JJ5 C4 C1 C 0 1 Y N N N N N -19.840 71.977 -5.396 -18.510 -5.544 0.412 C4 A1JJ5 1 A1JJ5 C14 C2 C 0 1 N N R N N N -14.825 81.689 -7.285 -10.380 2.365 -1.018 C14 A1JJ5 2 A1JJ5 C5 C3 C 0 1 Y N N N N N -19.066 73.127 -5.417 -17.237 -5.100 0.106 C5 A1JJ5 3 A1JJ5 C6 C4 C 0 1 Y N N N N N -17.736 73.107 -4.999 -16.549 -4.299 0.999 C6 A1JJ5 4 A1JJ5 C11 C5 C 0 1 Y N N N N N -14.075 78.678 -4.005 -14.888 1.075 -2.057 C11 A1JJ5 5 A1JJ5 C7 C6 C 0 1 N N N N N N -16.914 74.382 -5.038 -15.161 -3.817 0.662 C7 A1JJ5 6 A1JJ5 C8 C7 C 0 1 N N N N N N -16.779 75.177 -3.726 -15.252 -2.478 -0.074 C8 A1JJ5 7 A1JJ5 C9 C8 C 0 1 Y N N N N N -16.120 77.475 -4.376 -13.838 -0.836 -1.053 C9 A1JJ5 8 A1JJ5 C10 C9 C 0 1 Y N N N N N -15.008 77.753 -3.583 -14.986 -0.130 -1.385 C10 A1JJ5 9 A1JJ5 C12 C10 C 0 1 Y N N N N N -14.232 79.359 -5.203 -13.649 1.577 -2.403 C12 A1JJ5 10 A1JJ5 C13 C11 C 0 1 Y N N N N N -15.331 79.082 -6.023 -12.497 0.871 -2.077 C13 A1JJ5 11 A1JJ5 N1 N1 N 0 1 N N N N N N -9.205 82.709 -9.301 -4.108 4.205 -0.131 N1 A1JJ5 12 A1JJ5 N2 N2 N 0 1 N N N N N N -5.676 81.318 -9.751 0.571 5.581 0.409 N2 A1JJ5 13 A1JJ5 C3 C12 C 0 1 Y N N N N N -19.306 70.776 -4.965 -19.097 -5.190 1.612 C3 A1JJ5 14 A1JJ5 N3 N3 N 0 1 Y N N N N N -0.152 71.951 -7.144 8.142 -4.312 -0.968 N3 A1JJ5 15 A1JJ5 C1 C13 C 0 1 N N N N N N -16.229 69.029 -4.545 -20.300 -4.531 3.942 C1 A1JJ5 16 A1JJ5 O1 O1 O 0 1 N N N N N N -17.523 69.488 -4.142 -18.981 -4.041 3.692 O1 A1JJ5 17 A1JJ5 C2 C14 C 0 1 Y N N N N N -17.973 70.723 -4.565 -18.406 -4.391 2.511 C2 A1JJ5 18 A1JJ5 O2 O2 O 0 1 N N N N N N -17.093 76.573 -3.961 -13.936 -2.020 -0.393 O2 A1JJ5 19 A1JJ5 S1 S1 S 0 1 N N N N N N -15.512 79.962 -7.572 -10.916 1.509 -2.524 S1 A1JJ5 20 A1JJ5 C15 C15 C 0 1 N N N N N N -15.869 82.781 -7.218 -11.263 3.594 -0.788 C15 A1JJ5 21 A1JJ5 C16 C16 C 0 1 N N N N N N -13.755 82.091 -8.276 -8.945 2.800 -1.170 C16 A1JJ5 22 A1JJ5 O3 O3 O 0 1 N N N N N N -13.556 83.252 -8.685 -8.481 2.981 -2.276 O3 A1JJ5 23 A1JJ5 S2 S2 S 0 1 N N N N N N -12.735 80.704 -8.747 -7.971 3.037 0.218 S2 A1JJ5 24 A1JJ5 C17 C17 C 0 1 N N N N N N -11.408 81.634 -9.575 -6.418 3.532 -0.570 C17 A1JJ5 25 A1JJ5 C18 C18 C 0 1 N N N N N N -10.262 82.033 -8.607 -5.365 3.805 0.506 C18 A1JJ5 26 A1JJ5 C19 C19 C 0 1 N N N N N N -8.411 82.049 -10.160 -3.032 4.497 0.626 C19 A1JJ5 27 A1JJ5 O4 O4 O 0 1 N N N N N N -8.567 80.850 -10.364 -3.104 4.429 1.835 O4 A1JJ5 28 A1JJ5 C20 C20 C 0 1 N N N N N N -7.310 82.809 -10.874 -1.739 4.908 -0.029 C20 A1JJ5 29 A1JJ5 C21 C21 C 0 1 N N N N N N -5.981 82.079 -10.963 -0.686 5.181 1.046 C21 A1JJ5 30 A1JJ5 C22 C22 C 0 1 N N N N N N -5.268 81.904 -8.630 1.647 5.873 1.166 C22 A1JJ5 31 A1JJ5 O5 O5 O 0 1 N N N N N N -5.087 83.121 -8.514 1.551 5.893 2.375 O5 A1JJ5 32 A1JJ5 C23 C23 C 0 1 N N R N N N -4.949 80.942 -7.506 2.970 6.176 0.511 C23 A1JJ5 33 A1JJ5 O6 O6 O 0 1 N N N N N N -4.852 79.594 -7.993 2.796 6.238 -0.906 O6 A1JJ5 34 A1JJ5 C24 C24 C 0 1 N N N N N N -5.970 81.085 -6.338 3.973 5.072 0.853 C24 A1JJ5 35 A1JJ5 C25 C25 C 0 1 N N N N N N -7.391 80.697 -6.773 4.269 5.100 2.354 C25 A1JJ5 36 A1JJ5 C26 C26 C 0 1 N N N N N N -6.004 82.524 -5.821 3.384 3.712 0.475 C26 A1JJ5 37 A1JJ5 C27 C27 C 0 1 N N N N N N -5.446 80.185 -5.198 5.269 5.301 0.073 C27 A1JJ5 38 A1JJ5 O7 O7 O 0 1 N N N N N N -4.044 80.496 -4.834 6.206 4.271 0.393 O7 A1JJ5 39 A1JJ5 P1 P1 P 0 1 N N N N N N -3.114 79.311 -4.269 7.681 4.197 -0.248 P1 A1JJ5 40 A1JJ5 O8 O8 O 0 1 N N N N N N -3.906 78.291 -3.558 8.541 5.469 0.237 O8 A1JJ5 41 A1JJ5 O9 O9 O 0 1 N N N N N N -1.956 79.972 -3.638 7.579 4.204 -1.724 O9 A1JJ5 42 A1JJ5 O10 O10 O 0 1 N N N N N N -2.646 78.427 -5.536 8.408 2.844 0.234 O10 A1JJ5 43 A1JJ5 P2 P2 P 0 1 N N N N N N -1.653 78.784 -6.708 9.711 2.037 -0.261 P2 A1JJ5 44 A1JJ5 O11 O11 O 0 1 N N N N N N -0.921 79.966 -6.221 11.034 2.740 0.331 O11 A1JJ5 45 A1JJ5 O12 O12 O 0 1 N N N N N N -2.293 78.814 -8.043 9.766 2.048 -1.740 O12 A1JJ5 46 A1JJ5 O13 O13 O 0 1 N N N N N N -0.630 77.541 -6.667 9.632 0.517 0.262 O13 A1JJ5 47 A1JJ5 C28 C28 C 0 1 N N N N N N -1.180 76.214 -6.448 10.589 -0.481 -0.098 C28 A1JJ5 48 A1JJ5 C29 C29 C 0 1 N N R N N N -0.143 75.286 -5.858 10.219 -1.808 0.569 C29 A1JJ5 49 A1JJ5 O14 O14 O 0 1 N N N N N N -0.661 73.940 -5.970 8.986 -2.303 0.020 O14 A1JJ5 50 A1JJ5 C30 C30 C 0 1 N N R N N N 0.391 73.108 -6.436 9.080 -3.744 0.004 C30 A1JJ5 51 A1JJ5 C31 C31 C 0 1 Y N N N N N -1.096 71.943 -8.141 7.625 -3.675 -2.057 C31 A1JJ5 52 A1JJ5 N4 N4 N 0 1 Y N N N N N -1.386 70.748 -8.581 6.830 -4.477 -2.704 N4 A1JJ5 53 A1JJ5 C32 C32 C 0 1 Y N N N N N -0.561 69.916 -7.843 6.786 -5.675 -2.072 C32 A1JJ5 54 A1JJ5 C33 C33 C 0 1 Y N N N N N -0.387 68.521 -7.851 6.117 -6.889 -2.303 C33 A1JJ5 55 A1JJ5 N5 N5 N 0 1 N N N N N N -1.059 67.709 -8.659 5.276 -7.039 -3.391 N5 A1JJ5 56 A1JJ5 N6 N6 N 0 1 Y N N N N N 0.511 67.993 -6.979 6.312 -7.891 -1.451 N6 A1JJ5 57 A1JJ5 C34 C34 C 0 1 Y N N N N N 1.183 68.823 -6.168 7.113 -7.757 -0.410 C34 A1JJ5 58 A1JJ5 N7 N7 N 0 1 Y N N N N N 1.108 70.146 -6.076 7.760 -6.639 -0.155 N7 A1JJ5 59 A1JJ5 C35 C35 C 0 1 Y N N N N N 0.206 70.641 -6.949 7.627 -5.583 -0.951 C35 A1JJ5 60 A1JJ5 C36 C36 C 0 1 N N R N N N 1.200 74.000 -7.358 10.544 -4.005 -0.434 C36 A1JJ5 61 A1JJ5 O15 O15 O 0 1 N N N N N N 2.423 73.331 -7.575 10.991 -5.282 0.026 O15 A1JJ5 62 A1JJ5 C37 C37 C 0 1 N N S N N N 1.250 75.264 -6.508 11.307 -2.860 0.282 C37 A1JJ5 63 A1JJ5 O16 O16 O 0 1 N N N N N N 2.245 75.096 -5.502 11.886 -3.331 1.501 O16 A1JJ5 64 A1JJ5 P3 P3 P 0 1 N N N N N N 3.163 76.300 -4.912 13.466 -3.263 1.804 P3 A1JJ5 65 A1JJ5 O17 O17 O 0 1 N N N N N N 2.359 76.898 -3.780 13.776 -3.996 3.204 O17 A1JJ5 66 A1JJ5 O18 O18 O 0 1 N N N N N N 3.616 77.221 -6.061 14.207 -3.943 0.718 O18 A1JJ5 67 A1JJ5 O19 O19 O 0 1 N N N N N N 4.262 75.586 -4.173 13.931 -1.724 1.890 O19 A1JJ5 68 A1JJ5 C38 C38 C 0 1 Y N N N N N -16.280 78.150 -5.588 -12.593 -0.339 -1.403 C38 A1JJ5 69 A1JJ5 C39 C39 C 0 1 Y N N N N N -17.199 71.886 -4.579 -17.131 -3.941 2.199 C39 A1JJ5 70 A1JJ5 H1 H1 H 0 1 N N N N N N -20.870 72.019 -5.719 -19.048 -6.166 -0.288 H1 A1JJ5 71 A1JJ5 H2 H2 H 0 1 N N N N N N -14.350 81.625 -6.295 -10.467 1.691 -0.166 H2 A1JJ5 72 A1JJ5 H3 H3 H 0 1 N N N N N N -19.500 74.053 -5.763 -16.780 -5.378 -0.832 H3 A1JJ5 73 A1JJ5 H4 H4 H 0 1 N N N N N N -13.208 78.875 -3.392 -15.783 1.622 -2.314 H4 A1JJ5 74 A1JJ5 H5 H5 H 0 1 N N N N N N -15.900 74.111 -5.366 -14.588 -3.689 1.580 H5 A1JJ5 75 A1JJ5 H6 H6 H 0 1 N N N N N N -17.374 75.049 -5.782 -14.667 -4.549 0.024 H6 A1JJ5 76 A1JJ5 H7 H7 H 0 1 N N N N N N -17.474 74.768 -2.978 -15.825 -2.606 -0.992 H7 A1JJ5 77 A1JJ5 H8 H8 H 0 1 N N N N N N -15.748 75.093 -3.353 -15.746 -1.746 0.564 H8 A1JJ5 78 A1JJ5 H9 H9 H 0 1 N N N N N N -14.877 77.245 -2.639 -15.956 -0.522 -1.119 H9 A1JJ5 79 A1JJ5 H10 H10 H 0 1 N N N N N N -13.507 80.102 -5.502 -13.576 2.518 -2.927 H10 A1JJ5 80 A1JJ5 H11 H11 H 0 1 N N N N N N -9.057 83.685 -9.143 -4.050 4.259 -1.098 H11 A1JJ5 81 A1JJ5 H12 H12 H 0 1 N N N N N N -5.778 80.323 -9.767 0.629 5.636 -0.557 H12 A1JJ5 82 A1JJ5 H13 H13 H 0 1 N N N N N N -19.918 69.886 -4.939 -20.093 -5.534 1.849 H13 A1JJ5 83 A1JJ5 H14 H14 H 0 1 N N N N N N -16.043 68.033 -4.116 -20.640 -4.179 4.916 H14 A1JJ5 84 A1JJ5 H15 H15 H 0 1 N N N N N N -16.187 68.969 -5.643 -20.976 -4.167 3.168 H15 A1JJ5 85 A1JJ5 H16 H16 H 0 1 N N N N N N -15.463 69.732 -4.186 -20.290 -5.621 3.932 H16 A1JJ5 86 A1JJ5 H17 H17 H 0 1 N N N N N N -16.652 82.497 -6.499 -12.309 3.287 -0.748 H17 A1JJ5 87 A1JJ5 H18 H18 H 0 1 N N N N N N -15.397 83.720 -6.894 -10.988 4.068 0.154 H18 A1JJ5 88 A1JJ5 H19 H19 H 0 1 N N N N N N -16.318 82.921 -8.213 -11.123 4.300 -1.606 H19 A1JJ5 89 A1JJ5 H20 H20 H 0 1 N N N N N N -10.989 81.010 -10.378 -6.071 2.731 -1.223 H20 A1JJ5 90 A1JJ5 H21 H21 H 0 1 N N N N N N -11.837 82.549 -10.008 -6.580 4.435 -1.157 H21 A1JJ5 91 A1JJ5 H22 H22 H 0 1 N N N N N N -10.665 82.700 -7.831 -5.203 2.901 1.094 H22 A1JJ5 92 A1JJ5 H23 H23 H 0 1 N N N N N N -9.858 81.125 -8.136 -5.712 4.605 1.160 H23 A1JJ5 93 A1JJ5 H24 H24 H 0 1 N N N N N N -7.145 83.755 -10.337 -1.392 4.108 -0.683 H24 A1JJ5 94 A1JJ5 H25 H25 H 0 1 N N N N N N -7.651 83.023 -11.898 -1.901 5.812 -0.617 H25 A1JJ5 95 A1JJ5 H26 H26 H 0 1 N N N N N N -6.017 81.385 -11.816 -0.524 4.278 1.634 H26 A1JJ5 96 A1JJ5 H27 H27 H 0 1 N N N N N N -5.183 82.818 -11.125 -1.033 5.982 1.700 H27 A1JJ5 97 A1JJ5 H28 H28 H 0 1 N N N N N N -3.967 81.230 -7.102 3.345 7.133 0.873 H28 A1JJ5 98 A1JJ5 H29 H29 H 0 1 N N N N N N -3.940 79.327 -8.007 2.464 5.419 -1.298 H29 A1JJ5 99 A1JJ5 H30 H30 H 0 1 N N N N N N -8.079 80.811 -5.923 3.380 4.795 2.905 H30 A1JJ5 100 A1JJ5 H31 H31 H 0 1 N N N N N N -7.714 81.351 -7.596 5.087 4.415 2.576 H31 A1JJ5 101 A1JJ5 H32 H32 H 0 1 N N N N N N -7.398 79.651 -7.112 4.552 6.111 2.650 H32 A1JJ5 102 A1JJ5 H33 H33 H 0 1 N N N N N N -6.730 82.602 -4.998 3.173 3.692 -0.595 H33 A1JJ5 103 A1JJ5 H34 H34 H 0 1 N N N N N N -5.005 82.806 -5.456 4.098 2.926 0.719 H34 A1JJ5 104 A1JJ5 H35 H35 H 0 1 N N N N N N -6.301 83.200 -6.637 2.460 3.549 1.030 H35 A1JJ5 105 A1JJ5 H36 H36 H 0 1 N N N N N N -6.082 80.330 -4.312 5.058 5.282 -0.996 H36 A1JJ5 106 A1JJ5 H37 H37 H 0 1 N N N N N N -5.503 79.135 -5.522 5.689 6.271 0.343 H37 A1JJ5 107 A1JJ5 H38 H38 H 0 1 N N N N N N -3.547 78.161 -2.688 8.649 5.529 1.196 H38 A1JJ5 108 A1JJ5 H39 H39 H 0 1 N N N N N N -0.955 80.652 -6.877 11.065 2.769 1.297 H39 A1JJ5 109 A1JJ5 H40 H40 H 0 1 N N N N N N -2.032 76.288 -5.756 10.592 -0.607 -1.181 H40 A1JJ5 110 A1JJ5 H41 H41 H 0 1 N N N N N N -1.523 75.804 -7.409 11.580 -0.172 0.235 H41 A1JJ5 111 A1JJ5 H42 H42 H 0 1 N N N N N N -0.018 75.538 -4.795 10.114 -1.665 1.644 H42 A1JJ5 112 A1JJ5 H43 H43 H 0 1 N N N N N N 1.025 72.777 -5.600 8.896 -4.151 0.998 H43 A1JJ5 113 A1JJ5 H44 H44 H 0 1 N N N N N N -1.556 72.841 -8.526 7.843 -2.657 -2.341 H44 A1JJ5 114 A1JJ5 H45 H45 H 0 1 N N N N N N -0.781 66.764 -8.489 5.142 -6.301 -4.006 H45 A1JJ5 115 A1JJ5 H46 H46 H 0 1 N N N N N N -2.039 67.804 -8.486 4.820 -7.882 -3.539 H46 A1JJ5 116 A1JJ5 H47 H47 H 0 1 N N N N N N 1.883 68.350 -5.496 7.243 -8.596 0.257 H47 A1JJ5 117 A1JJ5 H48 H48 H 0 1 N N N N N N 0.654 74.186 -8.295 10.649 -3.925 -1.516 H48 A1JJ5 118 A1JJ5 H49 H49 H 0 1 N N N N N N 2.273 72.563 -8.114 10.543 -6.030 -0.392 H49 A1JJ5 119 A1JJ5 H50 H50 H 0 1 N N N N N N 1.414 76.158 -7.128 12.075 -2.446 -0.371 H50 A1JJ5 120 A1JJ5 H51 H51 H 0 1 N N N N N N 2.231 77.826 -3.938 14.710 -3.993 3.451 H51 A1JJ5 121 A1JJ5 H52 H52 H 0 1 N N N N N N 5.102 75.825 -4.546 13.486 -1.216 2.582 H52 A1JJ5 122 A1JJ5 H53 H53 H 0 1 N N N N N N -17.148 77.950 -6.198 -11.699 -0.889 -1.149 H53 A1JJ5 123 A1JJ5 H54 H54 H 0 1 N N N N N N -16.168 71.841 -4.260 -16.593 -3.316 2.896 H54 A1JJ5 124 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JJ5 C21 C20 SING N N 1 A1JJ5 C21 N2 SING N N 2 A1JJ5 C20 C19 SING N N 3 A1JJ5 O4 C19 DOUB N N 4 A1JJ5 C19 N1 SING N N 5 A1JJ5 N2 C22 SING N N 6 A1JJ5 C17 S2 SING N N 7 A1JJ5 C17 C18 SING N N 8 A1JJ5 N1 C18 SING N N 9 A1JJ5 S2 C16 SING N N 10 A1JJ5 O3 C16 DOUB N N 11 A1JJ5 N5 C33 SING N N 12 A1JJ5 C22 O5 DOUB N N 13 A1JJ5 C22 C23 SING N N 14 A1JJ5 N4 C31 DOUB Y N 15 A1JJ5 N4 C32 SING Y N 16 A1JJ5 C16 C14 SING N N 17 A1JJ5 C31 N3 SING Y N 18 A1JJ5 O12 P2 DOUB N N 19 A1JJ5 O6 C23 SING N N 20 A1JJ5 C33 C32 SING Y N 21 A1JJ5 C33 N6 DOUB Y N 22 A1JJ5 C32 C35 DOUB Y N 23 A1JJ5 O15 C36 SING N N 24 A1JJ5 S1 C14 SING N N 25 A1JJ5 S1 C13 SING N N 26 A1JJ5 C23 C24 SING N N 27 A1JJ5 C36 C37 SING N N 28 A1JJ5 C36 C30 SING N N 29 A1JJ5 C14 C15 SING N N 30 A1JJ5 N3 C35 SING Y N 31 A1JJ5 N3 C30 SING N N 32 A1JJ5 N6 C34 SING Y N 33 A1JJ5 C35 N7 SING Y N 34 A1JJ5 C25 C24 SING N N 35 A1JJ5 P2 O13 SING N N 36 A1JJ5 P2 O11 SING N N 37 A1JJ5 P2 O10 SING N N 38 A1JJ5 O13 C28 SING N N 39 A1JJ5 C37 C29 SING N N 40 A1JJ5 C37 O16 SING N N 41 A1JJ5 C28 C29 SING N N 42 A1JJ5 C30 O14 SING N N 43 A1JJ5 C24 C26 SING N N 44 A1JJ5 C24 C27 SING N N 45 A1JJ5 C34 N7 DOUB Y N 46 A1JJ5 O18 P3 DOUB N N 47 A1JJ5 C13 C38 DOUB Y N 48 A1JJ5 C13 C12 SING Y N 49 A1JJ5 O14 C29 SING N N 50 A1JJ5 C38 C9 SING Y N 51 A1JJ5 O10 P1 SING N N 52 A1JJ5 O16 P3 SING N N 53 A1JJ5 C5 C4 DOUB Y N 54 A1JJ5 C5 C6 SING Y N 55 A1JJ5 C4 C3 SING Y N 56 A1JJ5 C12 C11 DOUB Y N 57 A1JJ5 C27 O7 SING N N 58 A1JJ5 C7 C6 SING N N 59 A1JJ5 C7 C8 SING N N 60 A1JJ5 C6 C39 DOUB Y N 61 A1JJ5 C3 C2 DOUB Y N 62 A1JJ5 P3 O19 SING N N 63 A1JJ5 P3 O17 SING N N 64 A1JJ5 O7 P1 SING N N 65 A1JJ5 C39 C2 SING Y N 66 A1JJ5 C2 O1 SING N N 67 A1JJ5 C1 O1 SING N N 68 A1JJ5 C9 O2 SING N N 69 A1JJ5 C9 C10 DOUB Y N 70 A1JJ5 P1 O9 DOUB N N 71 A1JJ5 P1 O8 SING N N 72 A1JJ5 C11 C10 SING Y N 73 A1JJ5 O2 C8 SING N N 74 A1JJ5 C4 H1 SING N N 75 A1JJ5 C14 H2 SING N N 76 A1JJ5 C5 H3 SING N N 77 A1JJ5 C11 H4 SING N N 78 A1JJ5 C7 H5 SING N N 79 A1JJ5 C7 H6 SING N N 80 A1JJ5 C8 H7 SING N N 81 A1JJ5 C8 H8 SING N N 82 A1JJ5 C10 H9 SING N N 83 A1JJ5 C12 H10 SING N N 84 A1JJ5 N1 H11 SING N N 85 A1JJ5 N2 H12 SING N N 86 A1JJ5 C3 H13 SING N N 87 A1JJ5 C1 H14 SING N N 88 A1JJ5 C1 H15 SING N N 89 A1JJ5 C1 H16 SING N N 90 A1JJ5 C15 H17 SING N N 91 A1JJ5 C15 H18 SING N N 92 A1JJ5 C15 H19 SING N N 93 A1JJ5 C17 H20 SING N N 94 A1JJ5 C17 H21 SING N N 95 A1JJ5 C18 H22 SING N N 96 A1JJ5 C18 H23 SING N N 97 A1JJ5 C20 H24 SING N N 98 A1JJ5 C20 H25 SING N N 99 A1JJ5 C21 H26 SING N N 100 A1JJ5 C21 H27 SING N N 101 A1JJ5 C23 H28 SING N N 102 A1JJ5 O6 H29 SING N N 103 A1JJ5 C25 H30 SING N N 104 A1JJ5 C25 H31 SING N N 105 A1JJ5 C25 H32 SING N N 106 A1JJ5 C26 H33 SING N N 107 A1JJ5 C26 H34 SING N N 108 A1JJ5 C26 H35 SING N N 109 A1JJ5 C27 H36 SING N N 110 A1JJ5 C27 H37 SING N N 111 A1JJ5 O8 H38 SING N N 112 A1JJ5 O11 H39 SING N N 113 A1JJ5 C28 H40 SING N N 114 A1JJ5 C28 H41 SING N N 115 A1JJ5 C29 H42 SING N N 116 A1JJ5 C30 H43 SING N N 117 A1JJ5 C31 H44 SING N N 118 A1JJ5 N5 H45 SING N N 119 A1JJ5 N5 H46 SING N N 120 A1JJ5 C34 H47 SING N N 121 A1JJ5 C36 H48 SING N N 122 A1JJ5 O15 H49 SING N N 123 A1JJ5 C37 H50 SING N N 124 A1JJ5 O17 H51 SING N N 125 A1JJ5 O19 H52 SING N N 126 A1JJ5 C38 H53 SING N N 127 A1JJ5 C39 H54 SING N N 128 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JJ5 InChI InChI 1.06 "InChI=1S/C39H54N7O19P3S2/c1-23(70-27-10-6-9-26(18-27)60-15-12-24-7-5-8-25(17-24)59-4)38(51)69-16-14-41-29(47)11-13-42-36(50)33(49)39(2,3)20-62-68(57,58)65-67(55,56)61-19-28-32(64-66(52,53)54)31(48)37(63-28)46-22-45-30-34(40)43-21-44-35(30)46/h5-10,17-18,21-23,28,31-33,37,48-49H,11-16,19-20H2,1-4H3,(H,41,47)(H,42,50)(H,55,56)(H,57,58)(H2,40,43,44)(H2,52,53,54)/t23-,28-,31-,32-,33+,37-/m1/s1" A1JJ5 InChIKey InChI 1.06 DXJSKXDCDFGRRU-DNDWCATLSA-N A1JJ5 SMILES_CANONICAL CACTVS 3.385 "COc1cccc(CCOc2cccc(S[C@H](C)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O[P](O)(O)=O)n4cnc5c(N)ncnc45)c2)c1" A1JJ5 SMILES CACTVS 3.385 "COc1cccc(CCOc2cccc(S[CH](C)C(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O[P](O)(O)=O)n4cnc5c(N)ncnc45)c2)c1" A1JJ5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)Sc4cccc(c4)OCCc5cccc(c5)OC" A1JJ5 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)Sc4cccc(c4)OCCc5cccc(c5)OC" # _pdbx_chem_comp_identifier.comp_id A1JJ5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-[3-[2-(3-methoxyphenyl)ethoxy]phenyl]sulfanylpropanethioate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JJ5 "Create component" 2025-07-16 PDBE A1JJ5 "Initial release" 2026-07-29 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1JJ5 _pdbx_chem_comp_synonyms.name "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-[3-[2-(3-methoxyphenyl)ethoxy]phenyl]sulfanylpropanethioate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #