data_A1JJ7 # _chem_comp.id A1JJ7 _chem_comp.name "2-(3-(3-Methoxybenzyloxy)phenylthiol)propanoyl-CoA" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C38 H52 N7 O19 P3 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-[3-[(3-methoxyphenyl)methoxy]phenyl]sulfanylpropanethioate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-07-16 _chem_comp.pdbx_modified_date 2026-07-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1067.906 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JJ7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RZA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JJ7 C4 C1 C 0 1 Y N N N N N -28.032 102.500 -28.233 -12.387 -6.394 -3.170 C4 A1JJ7 1 A1JJ7 C14 C2 C 0 1 N N N N N N -31.190 92.863 -23.823 -13.140 4.295 2.235 C14 A1JJ7 2 A1JJ7 C5 C3 C 0 1 Y N N N N N -28.592 101.278 -27.882 -11.883 -5.424 -2.323 C5 A1JJ7 3 A1JJ7 C6 C4 C 0 1 Y N N N N N -27.856 100.107 -28.014 -12.392 -5.288 -1.044 C6 A1JJ7 4 A1JJ7 C11 C5 C 0 1 Y N N N N N -31.853 95.184 -27.458 -11.451 0.197 2.041 C11 A1JJ7 5 A1JJ7 C7 C6 C 0 1 N N N N N N -28.397 98.762 -27.652 -11.840 -4.230 -0.123 C7 A1JJ7 6 A1JJ7 C8 C7 C 0 1 Y N N N N N -30.466 97.580 -27.583 -12.210 -1.959 0.473 C8 A1JJ7 7 A1JJ7 C9 C8 C 0 1 Y N N N N N -31.732 97.493 -28.143 -11.152 -2.080 1.363 C9 A1JJ7 8 A1JJ7 C10 C9 C 0 1 Y N N N N N -32.416 96.296 -28.066 -10.773 -1.001 2.140 C10 A1JJ7 9 A1JJ7 C12 C10 C 0 1 Y N N N N N -30.568 95.255 -26.909 -12.519 0.322 1.159 C12 A1JJ7 10 A1JJ7 C13 C11 C 0 1 N N R N N N -31.204 92.884 -25.340 -12.402 2.965 2.072 C13 A1JJ7 11 A1JJ7 N1 N1 N 0 1 N N N N N N -33.722 88.227 -28.550 -6.103 4.318 0.656 N1 A1JJ7 12 A1JJ7 N2 N2 N 0 1 N N N N N N -34.709 86.875 -31.959 -1.441 5.305 -0.514 N2 A1JJ7 13 A1JJ7 C3 C12 C 0 1 Y N N N N N -26.733 102.562 -28.710 -13.403 -7.226 -2.743 C3 A1JJ7 14 A1JJ7 N3 N3 N 0 1 Y N N N N N -35.612 90.726 -42.535 9.005 -4.197 0.428 N3 A1JJ7 15 A1JJ7 C1 C13 C 0 1 N N N N N N -24.052 102.558 -29.575 -15.392 -8.885 -1.966 C1 A1JJ7 16 A1JJ7 O1 O1 O 0 1 N N N N N N -24.701 101.323 -29.289 -14.919 -7.905 -1.039 O1 A1JJ7 17 A1JJ7 C2 C14 C 0 1 Y N N N N N -25.997 101.380 -28.842 -13.919 -7.087 -1.462 C2 A1JJ7 18 A1JJ7 O2 O2 O 0 1 N N N N N N -29.827 98.789 -27.669 -12.582 -3.020 -0.290 O2 A1JJ7 19 A1JJ7 S1 S1 S 0 1 N N N N N N -29.840 93.825 -26.115 -13.390 1.848 1.038 S1 A1JJ7 20 A1JJ7 C15 C15 C 0 1 N N N N N N -31.326 91.468 -25.869 -11.068 3.208 1.415 C15 A1JJ7 21 A1JJ7 O3 O3 O 0 1 N N N N N N -31.686 90.539 -25.144 -10.952 3.087 0.214 O3 A1JJ7 22 A1JJ7 S2 S2 S 0 1 N N N N N N -31.063 91.270 -27.622 -9.715 3.653 2.365 S2 A1JJ7 23 A1JJ7 C16 C16 C 0 1 N N N N N N -31.752 89.592 -27.828 -8.457 3.799 1.072 C16 A1JJ7 24 A1JJ7 C17 C17 C 0 1 N N N N N N -33.229 89.580 -28.262 -7.122 4.201 1.702 C17 A1JJ7 25 A1JJ7 C18 C18 C 0 1 N N N N N N -33.306 87.548 -29.625 -4.842 4.665 0.979 C18 A1JJ7 26 A1JJ7 O4 O4 O 0 1 N N N N N N -32.535 88.053 -30.446 -4.549 4.878 2.137 O4 A1JJ7 27 A1JJ7 C19 C19 C 0 1 N N N N N N -33.797 86.131 -29.770 -3.794 4.786 -0.097 C19 A1JJ7 28 A1JJ7 C20 C20 C 0 1 N N N N N N -34.122 85.767 -31.214 -2.459 5.187 0.533 C20 A1JJ7 29 A1JJ7 C21 C21 C 0 1 N N N N N N -35.968 87.289 -31.793 -0.179 5.651 -0.191 C21 A1JJ7 30 A1JJ7 O5 O5 O 0 1 N N N N N N -36.760 86.775 -30.990 0.094 5.949 0.953 O5 A1JJ7 31 A1JJ7 C22 C22 C 0 1 N N R N N N -36.427 88.456 -32.670 0.892 5.669 -1.250 C22 A1JJ7 32 A1JJ7 O6 O6 O 0 1 N N N N N N -35.444 88.886 -33.633 0.299 5.450 -2.532 O6 A1JJ7 33 A1JJ7 C23 C23 C 0 1 N N N N N N -36.862 89.646 -31.749 1.910 4.563 -0.964 C23 A1JJ7 34 A1JJ7 C24 C24 C 0 1 N N N N N N -35.652 90.556 -31.472 2.566 4.812 0.395 C24 A1JJ7 35 A1JJ7 C25 C25 C 0 1 N N N N N N -37.492 89.194 -30.426 1.200 3.208 -0.947 C25 A1JJ7 36 A1JJ7 C26 C26 C 0 1 N N N N N N -38.088 90.357 -32.331 2.983 4.563 -2.056 C26 A1JJ7 37 A1JJ7 O7 O7 O 0 1 N N N N N N -37.793 90.946 -33.598 3.934 3.530 -1.789 O7 A1JJ7 38 A1JJ7 P1 P1 P 0 1 N N N N N N -38.845 91.087 -34.800 5.203 3.241 -2.735 P1 A1JJ7 39 A1JJ7 O8 O8 O 0 1 N N N N N N -38.598 92.502 -35.171 5.992 4.483 -2.895 O8 A1JJ7 40 A1JJ7 O9 O9 O 0 1 N N N N N N -40.110 90.313 -34.654 4.694 2.739 -4.178 O9 A1JJ7 41 A1JJ7 O10 O10 O 0 1 N N N N N N -37.964 90.272 -35.873 6.124 2.102 -2.066 O10 A1JJ7 42 A1JJ7 P2 P2 P 0 1 N N N N N N -38.091 88.722 -36.281 7.660 1.656 -2.248 P2 A1JJ7 43 A1JJ7 O11 O11 O 0 1 N N N N N N -39.269 87.944 -35.808 8.524 2.857 -2.275 O11 A1JJ7 44 A1JJ7 O12 O12 O 0 1 N N N N N N -36.749 88.113 -36.060 7.823 0.846 -3.631 O12 A1JJ7 45 A1JJ7 O13 O13 O 0 1 N N N N N N -38.310 89.012 -37.839 8.094 0.711 -1.019 O13 A1JJ7 46 A1JJ7 C27 C27 C 0 1 N N N N N N -37.253 89.669 -38.604 9.429 0.234 -0.837 C27 A1JJ7 47 A1JJ7 C28 C28 C 0 1 N N R N N N -37.903 90.231 -39.852 9.493 -0.633 0.422 C28 A1JJ7 48 A1JJ7 O14 O14 O 0 1 N N N N N N -36.936 90.952 -40.641 8.722 -1.830 0.231 O14 A1JJ7 49 A1JJ7 C29 C29 C 0 1 N N R N N N -36.947 90.481 -41.991 9.394 -2.885 0.951 C29 A1JJ7 50 A1JJ7 C30 C30 C 0 1 Y N N N N N -34.414 90.442 -41.925 8.521 -4.456 -0.820 C30 A1JJ7 51 A1JJ7 N4 N4 N 0 1 Y N N N N N -33.369 90.855 -42.598 8.285 -5.730 -0.949 N4 A1JJ7 52 A1JJ7 C31 C31 C 0 1 Y N N N N N -33.911 91.479 -43.706 8.601 -6.366 0.204 C31 A1JJ7 53 A1JJ7 C32 C32 C 0 1 Y N N N N N -33.315 92.134 -44.794 8.557 -7.702 0.640 C32 A1JJ7 54 A1JJ7 N5 N5 N 0 1 N N N N N N -32.001 92.304 -44.917 8.108 -8.706 -0.199 N5 A1JJ7 55 A1JJ7 N6 N6 N 0 1 Y N N N N N -34.143 92.688 -45.719 8.957 -7.977 1.877 N6 A1JJ7 56 A1JJ7 C33 C33 C 0 1 Y N N N N N -35.466 92.532 -45.574 9.388 -7.025 2.685 C33 A1JJ7 57 A1JJ7 N7 N7 N 0 1 Y N N N N N -36.134 91.912 -44.606 9.446 -5.762 2.320 N7 A1JJ7 58 A1JJ7 C34 C34 C 0 1 Y N N N N N -35.293 91.411 -43.683 9.067 -5.391 1.102 C34 A1JJ7 59 A1JJ7 C35 C35 C 0 1 N N R N N N -37.422 89.039 -41.878 10.895 -2.611 0.676 C35 A1JJ7 60 A1JJ7 O15 O15 O 0 1 N N N N N N -37.823 88.547 -43.138 11.712 -3.157 1.714 O15 A1JJ7 61 A1JJ7 C36 C36 C 0 1 N N S N N N -38.529 89.221 -40.829 10.949 -1.064 0.687 C36 A1JJ7 62 A1JJ7 O16 O16 O 0 1 N N N N N N -39.695 89.838 -41.345 11.387 -0.588 1.961 O16 A1JJ7 63 A1JJ7 P3 P3 P 0 1 N N N N N N -41.216 89.301 -41.194 12.642 0.405 2.143 P3 A1JJ7 64 A1JJ7 O17 O17 O 0 1 N N N N N N -41.379 88.646 -42.542 13.837 -0.189 1.502 O17 A1JJ7 65 A1JJ7 O18 O18 O 0 1 N N N N N N -41.976 90.585 -40.963 12.311 1.821 1.452 O18 A1JJ7 66 A1JJ7 O19 O19 O 0 1 N N N N N N -41.425 88.270 -40.093 12.929 0.627 3.711 O19 A1JJ7 67 A1JJ7 C37 C37 C 0 1 Y N N N N N -29.882 96.471 -26.967 -12.898 -0.759 0.375 C37 A1JJ7 68 A1JJ7 C38 C38 C 0 1 Y N N N N N -26.562 100.163 -28.504 -13.404 -6.121 -0.610 C38 A1JJ7 69 A1JJ7 H5 H1 H 0 1 N N N N N N -28.612 103.406 -28.134 -11.988 -6.498 -4.168 H5 A1JJ7 70 A1JJ7 H13 H2 H 0 1 N N N N N N -32.045 92.276 -23.456 -14.139 4.111 2.629 H13 A1JJ7 71 A1JJ7 H14 H3 H 0 1 N N N N N N -30.253 92.406 -23.471 -12.589 4.934 2.925 H14 A1JJ7 72 A1JJ7 H15 H4 H 0 1 N N N N N N -31.262 93.892 -23.442 -13.217 4.789 1.266 H15 A1JJ7 73 A1JJ7 H6 H5 H 0 1 N N N N N N -29.603 101.238 -27.505 -11.091 -4.772 -2.661 H6 A1JJ7 74 A1JJ7 H11 H6 H 0 1 N N N N N N -32.409 94.259 -27.408 -11.155 1.037 2.652 H11 A1JJ7 75 A1JJ7 H7 H7 H 0 1 N N N N N N -28.038 98.018 -28.378 -11.923 -4.568 0.909 H7 A1JJ7 76 A1JJ7 H8 H8 H 0 1 N N N N N N -28.050 98.489 -26.645 -10.792 -4.050 -0.364 H8 A1JJ7 77 A1JJ7 H9 H9 H 0 1 N N N N N N -32.176 98.348 -28.632 -10.617 -3.015 1.440 H9 A1JJ7 78 A1JJ7 H10 H10 H 0 1 N N N N N N -33.408 96.224 -28.487 -9.943 -1.096 2.825 H10 A1JJ7 79 A1JJ7 H12 H11 H 0 1 N N N N N N -32.112 93.424 -25.648 -12.248 2.512 3.051 H12 A1JJ7 80 A1JJ7 H20 H12 H 0 1 N N N N N N -34.383 87.804 -27.930 -6.337 4.147 -0.270 H20 A1JJ7 81 A1JJ7 H25 H13 H 0 1 N N N N N N -34.139 87.350 -32.629 -1.675 5.134 -1.440 H25 A1JJ7 82 A1JJ7 H4 H14 H 0 1 N N N N N N -26.294 103.512 -28.977 -13.797 -7.983 -3.405 H4 A1JJ7 83 A1JJ7 H1 H15 H 0 1 N N N N N N -23.026 102.362 -29.921 -15.777 -8.388 -2.856 H1 A1JJ7 84 A1JJ7 H2 H16 H 0 1 N N N N N N -24.608 103.091 -30.360 -14.571 -9.546 -2.245 H2 A1JJ7 85 A1JJ7 H3 H17 H 0 1 N N N N N N -24.020 103.175 -28.665 -16.187 -9.469 -1.503 H3 A1JJ7 86 A1JJ7 H16 H18 H 0 1 N N N N N N -31.161 89.065 -28.592 -8.345 2.841 0.565 H16 A1JJ7 87 A1JJ7 H17 H19 H 0 1 N N N N N N -31.667 89.061 -26.868 -8.762 4.558 0.352 H17 A1JJ7 88 A1JJ7 H18 H20 H 0 1 N N N N N N -33.837 90.012 -27.454 -6.817 3.441 2.422 H18 A1JJ7 89 A1JJ7 H19 H21 H 0 1 N N N N N N -33.335 90.194 -29.169 -7.233 5.159 2.210 H19 A1JJ7 90 A1JJ7 H21 H22 H 0 1 N N N N N N -33.017 85.449 -29.402 -3.683 3.828 -0.605 H21 A1JJ7 91 A1JJ7 H22 H23 H 0 1 N N N N N N -34.706 86.010 -29.163 -4.099 5.545 -0.817 H22 A1JJ7 92 A1JJ7 H23 H24 H 0 1 N N N N N N -33.193 85.459 -31.716 -2.154 4.428 1.253 H23 A1JJ7 93 A1JJ7 H24 H25 H 0 1 N N N N N N -34.834 84.928 -31.213 -2.571 6.145 1.041 H24 A1JJ7 94 A1JJ7 H26 H26 H 0 1 N N N N N N -37.325 88.126 -33.213 1.395 6.636 -1.243 H26 A1JJ7 95 A1JJ7 H27 H27 H 0 1 N N N N N N -35.793 89.609 -34.141 -0.167 4.607 -2.611 H27 A1JJ7 96 A1JJ7 H28 H28 H 0 1 N N N N N N -35.961 91.390 -30.825 1.829 4.671 1.186 H28 A1JJ7 97 A1JJ7 H29 H29 H 0 1 N N N N N N -34.864 89.975 -30.970 3.389 4.112 0.536 H29 A1JJ7 98 A1JJ7 H30 H30 H 0 1 N N N N N N -35.266 90.952 -32.423 2.947 5.833 0.433 H30 A1JJ7 99 A1JJ7 H31 H31 H 0 1 N N N N N N -37.772 90.077 -29.832 0.733 3.030 -1.916 H31 A1JJ7 100 A1JJ7 H32 H32 H 0 1 N N N N N N -38.389 88.592 -30.634 1.925 2.420 -0.743 H32 A1JJ7 101 A1JJ7 H33 H33 H 0 1 N N N N N N -36.767 88.588 -29.863 0.436 3.208 -0.170 H33 A1JJ7 102 A1JJ7 H34 H34 H 0 1 N N N N N N -38.900 89.626 -32.456 2.516 4.385 -3.024 H34 A1JJ7 103 A1JJ7 H35 H35 H 0 1 N N N N N N -38.409 91.146 -31.635 3.489 5.528 -2.068 H35 A1JJ7 104 A1JJ7 H49 H36 H 0 1 N N N N N N -40.851 90.877 -34.844 4.169 1.928 -4.149 H49 A1JJ7 105 A1JJ7 H50 H37 H 0 1 N N N N N N -36.849 87.273 -35.627 7.284 0.045 -3.683 H50 A1JJ7 106 A1JJ7 H36 H38 H 0 1 N N N N N N -36.805 90.480 -38.012 9.724 -0.359 -1.702 H36 A1JJ7 107 A1JJ7 H37 H39 H 0 1 N N N N N N -36.474 88.941 -38.877 10.105 1.082 -0.729 H37 A1JJ7 108 A1JJ7 H38 H40 H 0 1 N N N N N N -38.695 90.926 -39.538 9.108 -0.076 1.276 H38 A1JJ7 109 A1JJ7 H39 H41 H 0 1 N N N N N N -37.687 91.047 -42.576 9.179 -2.819 2.018 H39 A1JJ7 110 A1JJ7 H40 H42 H 0 1 N N N N N N -34.341 89.926 -40.979 8.358 -3.715 -1.588 H40 A1JJ7 111 A1JJ7 H41 H43 H 0 1 N N N N N N -31.810 92.853 -45.730 7.818 -8.492 -1.100 H41 A1JJ7 112 A1JJ7 H42 H44 H 0 1 N N N N N N -31.649 92.774 -44.108 8.082 -9.624 0.113 H42 A1JJ7 113 A1JJ7 H43 H45 H 0 1 N N N N N N -36.074 92.971 -46.351 9.704 -7.294 3.682 H43 A1JJ7 114 A1JJ7 H44 H46 H 0 1 N N N N N N -36.617 88.422 -41.452 11.190 -3.004 -0.296 H44 A1JJ7 115 A1JJ7 H45 H47 H 0 1 N N N N N N -38.116 87.648 -43.049 11.642 -4.117 1.805 H45 A1JJ7 116 A1JJ7 H46 H48 H 0 1 N N N N N N -38.744 88.270 -40.320 11.605 -0.699 -0.103 H46 A1JJ7 117 A1JJ7 H51 H49 H 0 1 N N N N N N -42.472 90.804 -41.743 11.538 2.268 1.822 H51 A1JJ7 118 A1JJ7 H52 H50 H 0 1 N N N N N N -41.615 87.425 -40.482 13.673 1.215 3.896 H52 A1JJ7 119 A1JJ7 H47 H51 H 0 1 N N N N N N -28.896 96.554 -26.534 -13.721 -0.663 -0.318 H47 A1JJ7 120 A1JJ7 H48 H52 H 0 1 N N N N N N -25.992 99.254 -28.623 -13.801 -6.014 0.389 H48 A1JJ7 121 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JJ7 C1 O1 SING N N 1 A1JJ7 O1 C2 SING N N 2 A1JJ7 C2 C3 DOUB Y N 3 A1JJ7 C3 C4 SING Y N 4 A1JJ7 C4 C5 DOUB Y N 5 A1JJ7 C5 C6 SING Y N 6 A1JJ7 C6 C7 SING N N 7 A1JJ7 C7 O2 SING N N 8 A1JJ7 O2 C8 SING N N 9 A1JJ7 C8 C9 DOUB Y N 10 A1JJ7 C9 C10 SING Y N 11 A1JJ7 C10 C11 DOUB Y N 12 A1JJ7 C11 C12 SING Y N 13 A1JJ7 C12 S1 SING N N 14 A1JJ7 S1 C13 SING N N 15 A1JJ7 C13 C14 SING N N 16 A1JJ7 C13 C15 SING N N 17 A1JJ7 C15 O3 DOUB N N 18 A1JJ7 C15 S2 SING N N 19 A1JJ7 S2 C16 SING N N 20 A1JJ7 C16 C17 SING N N 21 A1JJ7 C17 N1 SING N N 22 A1JJ7 N1 C18 SING N N 23 A1JJ7 C18 O4 DOUB N N 24 A1JJ7 C18 C19 SING N N 25 A1JJ7 C19 C20 SING N N 26 A1JJ7 C20 N2 SING N N 27 A1JJ7 N2 C21 SING N N 28 A1JJ7 C21 O5 DOUB N N 29 A1JJ7 C21 C22 SING N N 30 A1JJ7 C22 O6 SING N N 31 A1JJ7 C22 C23 SING N N 32 A1JJ7 C23 C24 SING N N 33 A1JJ7 C23 C25 SING N N 34 A1JJ7 C23 C26 SING N N 35 A1JJ7 C26 O7 SING N N 36 A1JJ7 O7 P1 SING N N 37 A1JJ7 P1 O8 DOUB N N 38 A1JJ7 P1 O9 SING N N 39 A1JJ7 P1 O10 SING N N 40 A1JJ7 O10 P2 SING N N 41 A1JJ7 P2 O11 DOUB N N 42 A1JJ7 P2 O12 SING N N 43 A1JJ7 P2 O13 SING N N 44 A1JJ7 O13 C27 SING N N 45 A1JJ7 C27 C28 SING N N 46 A1JJ7 C28 O14 SING N N 47 A1JJ7 O14 C29 SING N N 48 A1JJ7 C29 N3 SING N N 49 A1JJ7 N3 C30 SING Y N 50 A1JJ7 C30 N4 DOUB Y N 51 A1JJ7 N4 C31 SING Y N 52 A1JJ7 C31 C32 SING Y N 53 A1JJ7 C32 N5 SING N N 54 A1JJ7 C32 N6 DOUB Y N 55 A1JJ7 N6 C33 SING Y N 56 A1JJ7 C33 N7 DOUB Y N 57 A1JJ7 N7 C34 SING Y N 58 A1JJ7 C29 C35 SING N N 59 A1JJ7 C35 O15 SING N N 60 A1JJ7 C35 C36 SING N N 61 A1JJ7 C36 O16 SING N N 62 A1JJ7 O16 P3 SING N N 63 A1JJ7 P3 O17 DOUB N N 64 A1JJ7 P3 O18 SING N N 65 A1JJ7 P3 O19 SING N N 66 A1JJ7 C12 C37 DOUB Y N 67 A1JJ7 C6 C38 DOUB Y N 68 A1JJ7 C2 C38 SING Y N 69 A1JJ7 C8 C37 SING Y N 70 A1JJ7 C28 C36 SING N N 71 A1JJ7 N3 C34 SING Y N 72 A1JJ7 C31 C34 DOUB Y N 73 A1JJ7 C4 H5 SING N N 74 A1JJ7 C14 H13 SING N N 75 A1JJ7 C14 H14 SING N N 76 A1JJ7 C14 H15 SING N N 77 A1JJ7 C5 H6 SING N N 78 A1JJ7 C11 H11 SING N N 79 A1JJ7 C7 H7 SING N N 80 A1JJ7 C7 H8 SING N N 81 A1JJ7 C9 H9 SING N N 82 A1JJ7 C10 H10 SING N N 83 A1JJ7 C13 H12 SING N N 84 A1JJ7 N1 H20 SING N N 85 A1JJ7 N2 H25 SING N N 86 A1JJ7 C3 H4 SING N N 87 A1JJ7 C1 H1 SING N N 88 A1JJ7 C1 H2 SING N N 89 A1JJ7 C1 H3 SING N N 90 A1JJ7 C16 H16 SING N N 91 A1JJ7 C16 H17 SING N N 92 A1JJ7 C17 H18 SING N N 93 A1JJ7 C17 H19 SING N N 94 A1JJ7 C19 H21 SING N N 95 A1JJ7 C19 H22 SING N N 96 A1JJ7 C20 H23 SING N N 97 A1JJ7 C20 H24 SING N N 98 A1JJ7 C22 H26 SING N N 99 A1JJ7 O6 H27 SING N N 100 A1JJ7 C24 H28 SING N N 101 A1JJ7 C24 H29 SING N N 102 A1JJ7 C24 H30 SING N N 103 A1JJ7 C25 H31 SING N N 104 A1JJ7 C25 H32 SING N N 105 A1JJ7 C25 H33 SING N N 106 A1JJ7 C26 H34 SING N N 107 A1JJ7 C26 H35 SING N N 108 A1JJ7 O9 H49 SING N N 109 A1JJ7 O12 H50 SING N N 110 A1JJ7 C27 H36 SING N N 111 A1JJ7 C27 H37 SING N N 112 A1JJ7 C28 H38 SING N N 113 A1JJ7 C29 H39 SING N N 114 A1JJ7 C30 H40 SING N N 115 A1JJ7 N5 H41 SING N N 116 A1JJ7 N5 H42 SING N N 117 A1JJ7 C33 H43 SING N N 118 A1JJ7 C35 H44 SING N N 119 A1JJ7 O15 H45 SING N N 120 A1JJ7 C36 H46 SING N N 121 A1JJ7 O18 H51 SING N N 122 A1JJ7 O19 H52 SING N N 123 A1JJ7 C37 H47 SING N N 124 A1JJ7 C38 H48 SING N N 125 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JJ7 InChI InChI 1.06 "InChI=1S/C38H52N7O19P3S2/c1-22(69-26-10-6-9-25(16-26)59-17-23-7-5-8-24(15-23)58-4)37(50)68-14-13-40-28(46)11-12-41-35(49)32(48)38(2,3)19-61-67(56,57)64-66(54,55)60-18-27-31(63-65(51,52)53)30(47)36(62-27)45-21-44-29-33(39)42-20-43-34(29)45/h5-10,15-16,20-22,27,30-32,36,47-48H,11-14,17-19H2,1-4H3,(H,40,46)(H,41,49)(H,54,55)(H,56,57)(H2,39,42,43)(H2,51,52,53)/t22-,27-,30-,31-,32+,36-/m1/s1" A1JJ7 InChIKey InChI 1.06 UUYTUSKOMMITTJ-IRGRYGCCSA-N A1JJ7 SMILES_CANONICAL CACTVS 3.385 "COc1cccc(COc2cccc(S[C@H](C)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O[P](O)(O)=O)n4cnc5c(N)ncnc45)c2)c1" A1JJ7 SMILES CACTVS 3.385 "COc1cccc(COc2cccc(S[CH](C)C(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O[P](O)(O)=O)n4cnc5c(N)ncnc45)c2)c1" A1JJ7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)Sc4cccc(c4)OCc5cccc(c5)OC" A1JJ7 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)Sc4cccc(c4)OCc5cccc(c5)OC" # _pdbx_chem_comp_identifier.comp_id A1JJ7 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-[3-[(3-methoxyphenyl)methoxy]phenyl]sulfanylpropanethioate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JJ7 "Create component" 2025-07-16 PDBE A1JJ7 "Initial release" 2026-07-29 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1JJ7 _pdbx_chem_comp_synonyms.name "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-[3-[(3-methoxyphenyl)methoxy]phenyl]sulfanylpropanethioate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #