data_A1JJH # _chem_comp.id A1JJH _chem_comp.name "8-[4-[(4,4-dimethylpiperidin-1-yl)methyl]-2-oxidanyl-phenyl]-2-[6-(methylamino)pyrimidin-4-yl]-2,5,8-triazaspiro[3.5]nonan-6-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H35 N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-07-03 _chem_comp.pdbx_modified_date 2026-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 465.591 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JJH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RSW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JJH C10 C1 C 0 1 Y N N N N N -44.649 31.599 23.182 -1.465 -0.860 -1.387 C10 A1JJH 1 A1JJH C17 C2 C 0 1 N N N N N N -43.404 35.430 26.406 2.732 -1.402 -0.244 C17 A1JJH 2 A1JJH C21 C3 C 0 1 Y N N N N N -40.879 38.166 26.620 5.481 0.282 -0.473 C21 A1JJH 3 A1JJH C28 C4 C 0 1 Y N N N N N -40.541 39.056 25.543 5.912 1.502 0.037 C28 A1JJH 4 A1JJH C01 C5 C 0 1 N N N N N N -41.939 23.802 24.469 -9.199 -0.572 1.107 C01 A1JJH 5 A1JJH C02 C6 C 0 1 N N N N N N -42.365 24.885 23.464 -8.091 0.351 0.597 C02 A1JJH 6 A1JJH C03 C7 C 0 1 N N N N N N -43.542 24.435 22.602 -8.380 1.788 1.035 C03 A1JJH 7 A1JJH C04 C8 C 0 1 N N N N N N -41.147 25.293 22.619 -8.031 0.282 -0.931 C04 A1JJH 8 A1JJH C05 C9 C 0 1 N N N N N N -41.460 26.510 21.721 -6.881 1.160 -1.431 C05 A1JJH 9 A1JJH C07 C10 C 0 1 N N N N N N -42.534 28.744 21.492 -4.474 1.420 -1.417 C07 A1JJH 10 A1JJH C08 C11 C 0 1 Y N N N N N -42.986 30.022 22.278 -3.191 0.754 -0.992 C08 A1JJH 11 A1JJH C09 C12 C 0 1 Y N N N N N -44.308 30.443 22.444 -2.642 -0.245 -1.772 C09 A1JJH 12 A1JJH C11 C13 C 0 1 Y N N N N N -42.024 30.845 22.920 -2.566 1.145 0.179 C11 A1JJH 13 A1JJH C12 C14 C 0 1 Y N N N N N -42.345 32.022 23.674 -1.384 0.539 0.569 C12 A1JJH 14 A1JJH C14 C15 C 0 1 Y N N N N N -43.751 32.462 23.832 -0.833 -0.473 -0.214 C14 A1JJH 15 A1JJH C16 C16 C 0 1 N N N N N N -43.536 33.910 25.995 1.408 -0.922 -0.835 C16 A1JJH 16 A1JJH C18 C17 C 0 1 N N N N N N -42.607 36.215 27.562 3.909 -1.314 -1.226 C18 A1JJH 17 A1JJH C19 C18 C 0 1 N N N N N N -42.596 36.343 25.403 3.457 -0.330 0.583 C19 A1JJH 18 A1JJH C23 C19 C 0 1 Y N N N N N -39.473 39.574 27.893 7.669 -0.434 -0.574 C23 A1JJH 19 A1JJH C25 C20 C 0 1 Y N N N N N -39.657 40.206 25.675 7.278 1.693 0.222 C25 A1JJH 20 A1JJH C27 C21 C 0 1 N N N N N N -40.180 42.146 23.961 6.826 3.968 1.070 C27 A1JJH 21 A1JJH C30 C22 C 0 1 N N N N N N -45.494 34.197 24.726 0.136 -2.523 0.452 C30 A1JJH 22 A1JJH C31 C23 C 0 1 N N N N N N -45.780 35.481 25.613 1.434 -3.207 0.772 C31 A1JJH 23 A1JJH C33 C24 C 0 1 N N N N N N -43.189 27.278 23.315 -5.633 0.790 0.613 C33 A1JJH 24 A1JJH C34 C25 C 0 1 N N N N N N -42.866 26.107 24.243 -6.745 -0.098 1.174 C34 A1JJH 25 A1JJH N06 N1 N 0 1 N N N N N N -42.050 27.683 22.434 -5.616 0.689 -0.852 N06 A1JJH 26 A1JJH N15 N2 N 0 1 N N N N N N -44.070 33.713 24.628 0.356 -1.098 0.181 N15 A1JJH 27 A1JJH N20 N3 N 0 1 N N N N N N -41.771 36.996 26.524 4.131 0.044 -0.681 N20 A1JJH 28 A1JJH N22 N4 N 0 1 Y N N N N N -40.288 38.492 27.855 6.384 -0.653 -0.763 N22 A1JJH 29 A1JJH N24 N5 N 0 1 Y N N N N N -39.111 40.445 26.937 8.117 0.708 -0.093 N24 A1JJH 30 A1JJH N26 N6 N 0 1 N N N N N N -39.311 41.110 24.621 7.759 2.891 0.727 N26 A1JJH 31 A1JJH N29 N7 N 0 1 N N N N N N -44.746 35.998 26.355 2.624 -2.690 0.431 N29 A1JJH 32 A1JJH O13 O1 O 0 1 N N N N N N -41.372 32.803 24.269 -0.768 0.923 1.719 O13 A1JJH 33 A1JJH O32 O2 O 0 1 N N N N N N -46.881 36.044 25.649 1.406 -4.267 1.360 O32 A1JJH 34 A1JJH H101 H1 H 0 0 N N N N N N -45.699 31.842 23.253 -1.040 -1.643 -1.996 H101 A1JJH 35 A1JJH H281 H2 H 0 0 N N N N N N -40.971 38.859 24.572 5.205 2.281 0.283 H281 A1JJH 36 A1JJH H011 H3 H 0 0 N N N N N N -41.577 22.918 23.924 -9.238 -0.527 2.196 H011 A1JJH 37 A1JJH H012 H4 H 0 0 N N N N N N -41.135 24.193 25.110 -10.157 -0.252 0.696 H012 A1JJH 38 A1JJH H013 H5 H 0 0 N N N N N N -42.801 23.521 25.092 -8.993 -1.595 0.793 H013 A1JJH 39 A1JJH H031 H6 H 0 0 N N N N N N -43.812 25.238 21.900 -8.420 1.836 2.123 H031 A1JJH 40 A1JJH H032 H7 H 0 0 N N N N N N -43.259 23.534 22.037 -7.590 2.445 0.671 H032 A1JJH 41 A1JJH H033 H8 H 0 0 N N N N N N -44.403 24.208 23.247 -9.337 2.108 0.622 H033 A1JJH 42 A1JJH H041 H9 H 0 0 N N N N N N -40.316 25.550 23.292 -7.863 -0.749 -1.243 H041 A1JJH 43 A1JJH H042 H10 H 0 0 N N N N N N -40.854 24.445 21.982 -8.971 0.641 -1.349 H042 A1JJH 44 A1JJH H051 H11 H 0 0 N N N N N N -40.522 26.835 21.247 -6.826 1.102 -2.519 H051 A1JJH 45 A1JJH H052 H12 H 0 0 N N N N N N -42.171 26.189 20.946 -7.056 2.193 -1.131 H052 A1JJH 46 A1JJH H071 H13 H 0 0 N N N N N N -41.720 29.013 20.803 -4.487 2.449 -1.056 H071 A1JJH 47 A1JJH H072 H14 H 0 0 N N N N N N -43.387 28.354 20.917 -4.542 1.416 -2.505 H072 A1JJH 48 A1JJH H091 H15 H 0 0 N N N N N N -45.099 29.863 21.991 -3.133 -0.547 -2.685 H091 A1JJH 49 A1JJH H111 H16 H 0 0 N N N N N N -40.984 30.567 22.835 -2.998 1.928 0.786 H111 A1JJH 50 A1JJH H161 H17 H 0 0 N N N N N N -44.211 33.414 26.708 1.486 0.132 -1.104 H161 A1JJH 51 A1JJH H162 H18 H 0 0 N N N N N N -42.540 33.446 26.050 1.166 -1.510 -1.720 H162 A1JJH 52 A1JJH H181 H19 H 0 0 N N N N N N -43.249 36.856 28.184 4.716 -2.013 -1.008 H181 A1JJH 53 A1JJH H182 H20 H 0 0 N N N N N N -42.007 35.558 28.209 3.608 -1.324 -2.274 H182 A1JJH 54 A1JJH H191 H21 H 0 0 N N N N N N -41.985 35.772 24.688 2.796 0.444 0.975 H191 A1JJH 55 A1JJH H192 H22 H 0 0 N N N N N N -43.230 37.056 24.856 4.131 -0.738 1.337 H192 A1JJH 56 A1JJH H231 H23 H 0 0 N N N N N N -39.038 39.770 28.862 8.375 -1.213 -0.819 H231 A1JJH 57 A1JJH H271 H24 H 0 0 N N N N N N -39.602 42.671 23.186 7.384 4.825 1.448 H271 A1JJH 58 A1JJH H272 H25 H 0 0 N N N N N N -41.050 41.655 23.500 6.268 4.262 0.181 H272 A1JJH 59 A1JJH H273 H26 H 0 0 N N N N N N -40.524 42.870 24.714 6.134 3.619 1.836 H273 A1JJH 60 A1JJH H301 H27 H 0 0 N N N N N N -45.835 34.421 23.705 -0.310 -2.991 -0.426 H301 A1JJH 61 A1JJH H302 H28 H 0 0 N N N N N N -46.093 33.372 25.140 -0.543 -2.627 1.298 H302 A1JJH 62 A1JJH H331 H29 H 0 0 N N N N N N -43.473 28.142 23.933 -5.814 1.826 0.903 H331 A1JJH 63 A1JJH H332 H30 H 0 0 N N N N N N -44.036 26.990 22.676 -4.672 0.464 1.010 H332 A1JJH 64 A1JJH H341 H31 H 0 0 N N N N N N -43.776 25.829 24.795 -6.768 -0.011 2.260 H341 A1JJH 65 A1JJH H342 H32 H 0 0 N N N N N N -42.087 26.420 24.954 -6.558 -1.135 0.896 H342 A1JJH 66 A1JJH H261 H34 H 0 0 N N N N N N -38.531 41.625 24.976 8.712 3.017 0.853 H261 A1JJH 67 A1JJH H291 H35 H 0 0 N N N N N N -44.926 36.819 26.897 3.431 -3.185 0.638 H291 A1JJH 68 A1JJH H131 H36 H 0 0 N N N N N N -41.782 33.532 24.719 -1.050 0.427 2.501 H131 A1JJH 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JJH C01 C02 SING N N 1 A1JJH C02 C34 SING N N 2 A1JJH C02 C03 SING N N 3 A1JJH C02 C04 SING N N 4 A1JJH C04 C05 SING N N 5 A1JJH C05 N06 SING N N 6 A1JJH N06 C07 SING N N 7 A1JJH N06 C33 SING N N 8 A1JJH C07 C08 SING N N 9 A1JJH C08 C09 DOUB Y N 10 A1JJH C08 C11 SING Y N 11 A1JJH C09 C10 SING Y N 12 A1JJH C10 C14 DOUB Y N 13 A1JJH C11 C12 DOUB Y N 14 A1JJH C12 O13 SING N N 15 A1JJH C12 C14 SING Y N 16 A1JJH C14 N15 SING N N 17 A1JJH N15 C16 SING N N 18 A1JJH N15 C30 SING N N 19 A1JJH C16 C17 SING N N 20 A1JJH C17 C18 SING N N 21 A1JJH C17 C19 SING N N 22 A1JJH C17 N29 SING N N 23 A1JJH C18 N20 SING N N 24 A1JJH C19 N20 SING N N 25 A1JJH N20 C21 SING N N 26 A1JJH C21 C28 DOUB Y N 27 A1JJH C21 N22 SING Y N 28 A1JJH N22 C23 DOUB Y N 29 A1JJH C23 N24 SING Y N 30 A1JJH N24 C25 DOUB Y N 31 A1JJH C25 N26 SING N N 32 A1JJH C25 C28 SING Y N 33 A1JJH N26 C27 SING N N 34 A1JJH N29 C31 SING N N 35 A1JJH C30 C31 SING N N 36 A1JJH C31 O32 DOUB N N 37 A1JJH C33 C34 SING N N 38 A1JJH C10 H101 SING N N 39 A1JJH C28 H281 SING N N 40 A1JJH C01 H011 SING N N 41 A1JJH C01 H012 SING N N 42 A1JJH C01 H013 SING N N 43 A1JJH C03 H031 SING N N 44 A1JJH C03 H032 SING N N 45 A1JJH C03 H033 SING N N 46 A1JJH C04 H041 SING N N 47 A1JJH C04 H042 SING N N 48 A1JJH C05 H051 SING N N 49 A1JJH C05 H052 SING N N 50 A1JJH C07 H071 SING N N 51 A1JJH C07 H072 SING N N 52 A1JJH C09 H091 SING N N 53 A1JJH C11 H111 SING N N 54 A1JJH C16 H161 SING N N 55 A1JJH C16 H162 SING N N 56 A1JJH C18 H181 SING N N 57 A1JJH C18 H182 SING N N 58 A1JJH C19 H191 SING N N 59 A1JJH C19 H192 SING N N 60 A1JJH C23 H231 SING N N 61 A1JJH C27 H271 SING N N 62 A1JJH C27 H272 SING N N 63 A1JJH C27 H273 SING N N 64 A1JJH C30 H301 SING N N 65 A1JJH C30 H302 SING N N 66 A1JJH C33 H331 SING N N 67 A1JJH C33 H332 SING N N 68 A1JJH C34 H341 SING N N 69 A1JJH C34 H342 SING N N 70 A1JJH N26 H261 SING N N 71 A1JJH N29 H291 SING N N 72 A1JJH O13 H131 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JJH InChI InChI 1.06 "InChI=1S/C25H35N7O2/c1-24(2)6-8-30(9-7-24)12-18-4-5-19(20(33)10-18)31-13-23(34)29-25(14-31)15-32(16-25)22-11-21(26-3)27-17-28-22/h4-5,10-11,17,33H,6-9,12-16H2,1-3H3,(H,29,34)(H,26,27,28)" A1JJH InChIKey InChI 1.06 UPJFRQDGSCJBKW-UHFFFAOYSA-N A1JJH SMILES_CANONICAL CACTVS 3.385 "CNc1cc(ncn1)N2CC3(CN(CC(=O)N3)c4ccc(CN5CCC(C)(C)CC5)cc4O)C2" A1JJH SMILES CACTVS 3.385 "CNc1cc(ncn1)N2CC3(CN(CC(=O)N3)c4ccc(CN5CCC(C)(C)CC5)cc4O)C2" A1JJH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1(CCN(CC1)Cc2ccc(c(c2)O)N3CC(=O)NC4(C3)CN(C4)c5cc(ncn5)NC)C" A1JJH SMILES "OpenEye OEToolkits" 2.0.7 "CC1(CCN(CC1)Cc2ccc(c(c2)O)N3CC(=O)NC4(C3)CN(C4)c5cc(ncn5)NC)C" # _pdbx_chem_comp_identifier.comp_id A1JJH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "8-[4-[(4,4-dimethylpiperidin-1-yl)methyl]-2-oxidanyl-phenyl]-2-[6-(methylamino)pyrimidin-4-yl]-2,5,8-triazaspiro[3.5]nonan-6-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JJH "Create component" 2025-07-03 PDBE A1JJH "Initial release" 2026-03-18 RCSB #