data_A1JJL # _chem_comp.id A1JJL _chem_comp.name "2-[(~{Z})-2-(3-nitro-4-oxidanyl-phenyl)ethenyl]-7-(phenylmethyl)-3,5,6,8-tetrahydropyrido[3,4-d]pyrimidin-4-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H20 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-07-04 _chem_comp.pdbx_modified_date 2026-07-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 404.419 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JJL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RUE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JJL N1 N1 N 0 1 N N N N N N -43.983 -4.729 11.789 4.018 -1.085 -0.770 N1 A1JJL 1 A1JJL C7 C1 C 0 1 N N N N N N -44.296 -6.002 9.760 2.543 -2.989 -1.194 C7 A1JJL 2 A1JJL C8 C2 C 0 1 N N N N N N -43.426 -5.443 8.925 1.328 -3.560 -1.061 C8 A1JJL 3 A1JJL O1 O1 O 0 1 N N N N N N -41.133 -0.442 10.072 -2.535 -1.176 2.218 O1 A1JJL 4 A1JJL C1 C3 C 0 1 N N N N N N -44.195 -7.233 15.907 2.110 2.865 1.289 C1 A1JJL 5 A1JJL C5 C4 C 0 1 N N N N N N -43.846 -4.599 13.159 4.211 0.189 -0.369 C5 A1JJL 6 A1JJL C6 C5 C 0 1 N N N N N N -44.444 -5.864 11.192 2.755 -1.610 -0.758 C6 A1JJL 7 A1JJL C4 C6 C 0 1 N N N N N N -44.225 -5.757 13.915 3.100 0.946 0.059 C4 A1JJL 8 A1JJL C3 C7 C 0 1 N N N N N N -44.784 -6.826 13.247 1.867 0.371 0.061 C3 A1JJL 9 A1JJL C2 C8 C 0 1 N N N N N N -45.389 -7.990 13.953 0.641 1.119 0.514 C2 A1JJL 10 A1JJL O O2 O 0 1 N N N N N N -43.461 -3.529 13.646 5.328 0.678 -0.377 O A1JJL 11 A1JJL C C9 C 0 1 N N N N N N -43.848 -5.849 15.370 3.319 2.370 0.496 C A1JJL 12 A1JJL N N2 N 0 1 N N N N N N -45.487 -7.696 15.381 0.892 2.563 0.520 N A1JJL 13 A1JJL O3 O3 O -1 1 N N N N N N -43.687 -0.935 6.811 -3.696 -2.654 -1.342 O3 A1JJL 14 A1JJL N3 N3 N 1 1 N N N N N N -42.885 -0.716 7.709 -3.374 -2.198 -0.259 N3 A1JJL 15 A1JJL O2 O4 O 0 1 N N N N N N -42.356 0.370 7.885 -4.211 -1.676 0.455 O2 A1JJL 16 A1JJL C11 C10 C 0 1 Y N N N N N -42.507 -1.825 8.592 -1.965 -2.278 0.188 C11 A1JJL 17 A1JJL C10 C11 C 0 1 Y N N N N N -43.041 -3.062 8.299 -1.019 -2.862 -0.623 C10 A1JJL 18 A1JJL C12 C12 C 0 1 Y N N N N N -41.675 -1.623 9.705 -1.599 -1.757 1.424 C12 A1JJL 19 A1JJL C13 C13 C 0 1 Y N N N N N -41.384 -2.726 10.502 -0.278 -1.828 1.850 C13 A1JJL 20 A1JJL C14 C14 C 0 1 Y N N N N N -41.907 -3.970 10.206 0.675 -2.416 1.049 C14 A1JJL 21 A1JJL C9 C15 C 0 1 Y N N N N N -42.754 -4.156 9.119 0.313 -2.937 -0.199 C9 A1JJL 22 A1JJL N2 N4 N 0 1 N N N N N N -44.896 -6.908 11.875 1.724 -0.889 -0.357 N2 A1JJL 23 A1JJL C15 C16 C 0 1 N N N N N N -45.963 -8.880 16.098 -0.263 3.297 1.053 C15 A1JJL 24 A1JJL C16 C17 C 0 1 Y N N N N N -47.463 -9.015 16.052 -1.434 3.140 0.117 C16 A1JJL 25 A1JJL C21 C18 C 0 1 Y N N N N N -48.280 -7.894 16.165 -2.316 2.089 0.283 C21 A1JJL 26 A1JJL C20 C19 C 0 1 Y N N N N N -49.658 -8.026 16.198 -3.390 1.945 -0.576 C20 A1JJL 27 A1JJL C19 C20 C 0 1 Y N N N N N -50.239 -9.275 16.104 -3.580 2.852 -1.601 C19 A1JJL 28 A1JJL C18 C21 C 0 1 Y N N N N N -49.438 -10.395 15.982 -2.698 3.903 -1.768 C18 A1JJL 29 A1JJL C17 C22 C 0 1 Y N N N N N -48.058 -10.266 15.953 -1.628 4.050 -0.905 C17 A1JJL 30 A1JJL H1 H1 H 0 1 N N N N N N -43.732 -3.954 11.209 4.768 -1.623 -1.068 H1 A1JJL 31 A1JJL H2 H2 H 0 1 N N N N N N -45.008 -6.667 9.294 3.360 -3.550 -1.624 H2 A1JJL 32 A1JJL H4 H4 H 0 1 N N N N N N -43.193 -5.987 8.022 1.101 -4.476 -1.586 H4 A1JJL 33 A1JJL H6 H6 H 0 1 N N N N N N -41.374 0.227 9.442 -2.971 -1.790 2.826 H6 A1JJL 34 A1JJL H7 H7 H 0 1 N N N N N N -43.410 -7.942 15.606 2.070 2.356 2.252 H7 A1JJL 35 A1JJL H8 H8 H 0 1 N N N N N N -44.249 -7.189 17.005 2.190 3.941 1.447 H8 A1JJL 36 A1JJL H11 H11 H 0 1 N N N N N N -46.394 -8.183 13.548 -0.184 0.900 -0.163 H11 A1JJL 37 A1JJL H12 H12 H 0 1 N N N N N N -44.757 -8.878 13.804 0.375 0.796 1.521 H12 A1JJL 38 A1JJL H13 H13 H 0 1 N N N N N N -42.767 -5.675 15.479 3.458 3.000 -0.383 H13 A1JJL 39 A1JJL H14 H14 H 0 1 N N N N N N -44.401 -5.087 15.939 4.210 2.423 1.122 H14 A1JJL 40 A1JJL H16 H16 H 0 1 N N N N N N -43.680 -3.185 7.437 -1.304 -3.263 -1.584 H16 A1JJL 41 A1JJL H17 H17 H 0 1 N N N N N N -40.742 -2.608 11.362 0.001 -1.422 2.811 H17 A1JJL 42 A1JJL H18 H18 H 0 1 N N N N N N -41.653 -4.814 10.831 1.702 -2.470 1.380 H18 A1JJL 43 A1JJL H19 H19 H 0 1 N N N N N N -45.514 -9.774 15.641 -0.526 2.898 2.033 H19 A1JJL 44 A1JJL H20 H20 H 0 1 N N N N N N -45.647 -8.807 17.149 -0.012 4.353 1.146 H20 A1JJL 45 A1JJL H21 H21 H 0 1 N N N N N N -47.835 -6.912 16.228 -2.167 1.380 1.085 H21 A1JJL 46 A1JJL H22 H22 H 0 1 N N N N N N -50.280 -7.149 16.298 -4.079 1.124 -0.445 H22 A1JJL 47 A1JJL H23 H23 H 0 1 N N N N N N -51.314 -9.376 16.126 -4.419 2.740 -2.273 H23 A1JJL 48 A1JJL H24 H24 H 0 1 N N N N N N -49.889 -11.374 15.909 -2.847 4.611 -2.570 H24 A1JJL 49 A1JJL H25 H25 H 0 1 N N N N N N -47.440 -11.146 15.853 -0.938 4.871 -1.036 H25 A1JJL 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JJL O3 N3 SING N N 1 A1JJL N3 O2 DOUB N N 2 A1JJL N3 C11 SING N N 3 A1JJL C10 C11 DOUB Y N 4 A1JJL C10 C9 SING Y N 5 A1JJL C11 C12 SING Y N 6 A1JJL C8 C9 SING N N 7 A1JJL C8 C7 DOUB N Z 8 A1JJL C9 C14 DOUB Y N 9 A1JJL C12 O1 SING N N 10 A1JJL C12 C13 DOUB Y N 11 A1JJL C7 C6 SING N N 12 A1JJL C14 C13 SING Y N 13 A1JJL C6 N1 SING N N 14 A1JJL C6 N2 DOUB N N 15 A1JJL N1 C5 SING N N 16 A1JJL N2 C3 SING N N 17 A1JJL C5 O DOUB N N 18 A1JJL C5 C4 SING N N 19 A1JJL C3 C4 DOUB N N 20 A1JJL C3 C2 SING N N 21 A1JJL C4 C SING N N 22 A1JJL C2 N SING N N 23 A1JJL C C1 SING N N 24 A1JJL N C1 SING N N 25 A1JJL N C15 SING N N 26 A1JJL C17 C18 DOUB Y N 27 A1JJL C17 C16 SING Y N 28 A1JJL C18 C19 SING Y N 29 A1JJL C16 C15 SING N N 30 A1JJL C16 C21 DOUB Y N 31 A1JJL C19 C20 DOUB Y N 32 A1JJL C21 C20 SING Y N 33 A1JJL N1 H1 SING N N 34 A1JJL C7 H2 SING N N 35 A1JJL C8 H4 SING N N 36 A1JJL O1 H6 SING N N 37 A1JJL C1 H7 SING N N 38 A1JJL C1 H8 SING N N 39 A1JJL C2 H11 SING N N 40 A1JJL C2 H12 SING N N 41 A1JJL C H13 SING N N 42 A1JJL C H14 SING N N 43 A1JJL C10 H16 SING N N 44 A1JJL C13 H17 SING N N 45 A1JJL C14 H18 SING N N 46 A1JJL C15 H19 SING N N 47 A1JJL C15 H20 SING N N 48 A1JJL C21 H21 SING N N 49 A1JJL C20 H22 SING N N 50 A1JJL C19 H23 SING N N 51 A1JJL C18 H24 SING N N 52 A1JJL C17 H25 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JJL InChI InChI 1.06 "InChI=1S/C22H20N4O4/c27-20-8-6-15(12-19(20)26(29)30)7-9-21-23-18-14-25(11-10-17(18)22(28)24-21)13-16-4-2-1-3-5-16/h1-9,12,27H,10-11,13-14H2,(H,23,24,28)/b9-7-" A1JJL InChIKey InChI 1.06 JTYPWCVMZDPROU-CLFYSBASSA-N A1JJL SMILES_CANONICAL CACTVS 3.385 "Oc1ccc(\C=C/C2=NC3=C(CCN(Cc4ccccc4)C3)C(=O)N2)cc1[N+]([O-])=O" A1JJL SMILES CACTVS 3.385 "Oc1ccc(C=CC2=NC3=C(CCN(Cc4ccccc4)C3)C(=O)N2)cc1[N+]([O-])=O" A1JJL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CN2CCC3=C(C2)N=C(NC3=O)/C=C\c4ccc(c(c4)[N+](=O)[O-])O" A1JJL SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CN2CCC3=C(C2)N=C(NC3=O)C=Cc4ccc(c(c4)[N+](=O)[O-])O" # _pdbx_chem_comp_identifier.comp_id A1JJL _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[(~{Z})-2-(3-nitro-4-oxidanyl-phenyl)ethenyl]-7-(phenylmethyl)-3,5,6,8-tetrahydropyrido[3,4-d]pyrimidin-4-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JJL "Create component" 2025-07-04 PDBE A1JJL "Initial release" 2026-07-15 RCSB #