data_A1JJO # _chem_comp.id A1JJO _chem_comp.name "(2R,4S,5R,6R)-5-acetamido-6-[(1S,2S)-1,2-bis(oxidanyl)-3-[(4-phenylphenyl)carbonylamino]propyl]-2-[[1-[(2R)-3-(2-methyl-5-nitro-imidazol-1-yl)-2-oxidanyl-propyl]-1,2,3-triazol-4-yl]methyl]-4-oxidanyl-oxane-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H40 N8 O11" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-07-07 _chem_comp.pdbx_modified_date 2025-12-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 736.728 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JJO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RO7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JJO C11 C1 C 0 1 N N R N N N -11.808 37.086 -52.895 -4.596 -0.645 -0.083 C11 A1JJO 1 A1JJO C2 C2 C 0 1 N N R N N N -13.675 38.027 -54.068 -4.483 1.747 0.038 C2 A1JJO 2 A1JJO O1A O1 O 0 1 N N N N N N -13.985 40.303 -53.475 -5.097 2.398 -2.141 O1A A1JJO 3 A1JJO N4 N1 N 0 1 Y N N N N N -15.618 34.142 -54.669 -0.292 2.180 -0.032 N4 A1JJO 4 A1JJO C5 C3 C 0 1 N N R N N N -10.781 37.616 -53.895 -6.095 -0.638 0.231 C5 A1JJO 5 A1JJO C7 C4 C 0 1 N N S N N N -11.418 35.812 -52.154 -3.963 -1.919 0.480 C7 A1JJO 6 A1JJO C10 C5 C 0 1 N N N N N N -15.051 37.708 -54.654 -3.735 2.893 0.724 C10 A1JJO 7 A1JJO C1 C6 C 0 1 N N N N N N -13.930 39.140 -53.030 -4.280 1.835 -1.452 C1 A1JJO 8 A1JJO C8 C7 C 0 1 N N N N N N -8.326 37.614 -53.841 -7.886 -2.282 0.063 C8 A1JJO 9 A1JJO C12 C8 C 0 1 N N N N N N -7.104 37.992 -53.060 -8.548 -3.452 -0.617 C12 A1JJO 10 A1JJO C6 C9 C 0 1 N N S N N N -11.390 36.006 -50.636 -2.465 -1.925 0.167 C6 A1JJO 11 A1JJO C9 C10 C 0 1 N N N N N N -11.371 34.670 -49.892 -1.832 -3.199 0.730 C9 A1JJO 12 A1JJO C13 C11 C 0 1 N N N N N N -13.640 33.917 -49.393 0.370 -4.237 0.832 C13 A1JJO 13 A1JJO C14 C12 C 0 1 Y N N N N N -14.785 33.937 -48.431 1.816 -4.243 0.530 C14 A1JJO 14 A1JJO C15 C13 C 0 1 Y N N N N N -14.644 34.458 -47.150 2.613 -5.312 0.946 C15 A1JJO 15 A1JJO C16 C14 C 0 1 Y N N N N N -15.728 34.533 -46.295 3.960 -5.317 0.664 C16 A1JJO 16 A1JJO C17 C15 C 0 1 Y N N N N N -16.990 34.097 -46.688 4.530 -4.254 -0.038 C17 A1JJO 17 A1JJO C20 C16 C 0 1 Y N N N N N -16.042 33.495 -48.830 2.387 -3.182 -0.178 C20 A1JJO 18 A1JJO C21 C17 C 0 1 Y N N N N N -19.411 33.730 -46.162 6.554 -3.200 -1.042 C21 A1JJO 19 A1JJO C23 C18 C 0 1 Y N N N N N -19.119 34.871 -43.666 8.129 -5.326 -0.211 C23 A1JJO 20 A1JJO C24 C19 C 0 1 Y N N N N N -20.497 33.831 -45.309 7.906 -3.211 -1.321 C24 A1JJO 21 A1JJO C25 C20 C 0 1 Y N N N N N -20.352 34.401 -44.063 8.692 -4.271 -0.907 C25 A1JJO 22 A1JJO C27 C21 C 0 1 Y N N N N N -16.835 35.922 -55.145 -1.579 3.876 -0.241 C27 A1JJO 23 A1JJO C28 C22 C 0 1 N N N N N N -17.856 33.657 -55.525 0.791 4.145 -1.020 C28 A1JJO 24 A1JJO C29 C23 C 0 1 N N R N N N -17.385 32.220 -55.530 1.980 4.110 -0.058 C29 A1JJO 25 A1JJO C30 C24 C 0 1 N N N N N N -17.490 31.606 -54.144 3.188 4.780 -0.715 C30 A1JJO 26 A1JJO C31 C25 C 0 1 Y N N N N N -18.517 33.030 -52.342 4.744 5.502 1.122 C31 A1JJO 27 A1JJO C32 C26 C 0 1 Y N N N N N -19.943 31.733 -53.371 5.263 3.614 0.144 C32 A1JJO 28 A1JJO C33 C27 C 0 1 N N N N N N -17.267 33.747 -51.992 4.040 6.782 1.490 C33 A1JJO 29 A1JJO C18 C28 C 0 1 Y N N N N N -18.155 34.192 -45.773 5.982 -4.260 -0.341 C18 A1JJO 30 A1JJO C19 C29 C 0 1 Y N N N N N -17.125 33.580 -47.974 3.735 -3.186 -0.454 C19 A1JJO 31 A1JJO C22 C30 C 0 1 Y N N N N N -18.026 34.765 -44.510 6.779 -5.326 0.074 C22 A1JJO 32 A1JJO C26 C31 C 0 1 Y N N N N N -15.606 36.320 -54.717 -2.285 2.863 0.312 C26 A1JJO 33 A1JJO C3 C32 C 0 1 N N N N N N -12.709 38.613 -55.104 -5.977 1.850 0.357 C3 A1JJO 34 A1JJO C34 C33 C 0 1 Y N N N N N -20.566 32.400 -52.366 6.172 3.885 1.099 C34 A1JJO 35 A1JJO C4 C34 C 0 1 N N S N N N -11.343 38.905 -54.487 -6.710 0.667 -0.283 C4 A1JJO 36 A1JJO N5 N2 N 0 1 N N N N N N -9.500 37.879 -53.258 -6.738 -1.776 -0.431 N5 A1JJO 37 A1JJO N2 N3 N 0 1 N N N N N N -12.500 34.485 -48.993 -0.398 -3.205 0.430 N2 A1JJO 38 A1JJO N3 N4 N 0 1 Y N N N N N -14.885 35.205 -54.421 -1.443 1.829 0.423 N3 A1JJO 39 A1JJO N1 N5 N 0 1 Y N N N N N -16.806 34.585 -55.115 -0.329 3.400 -0.440 N1 A1JJO 40 A1JJO N6 N6 N 0 1 Y N N N N N -18.612 32.115 -53.354 4.358 4.641 0.156 N6 A1JJO 41 A1JJO N7 N7 N 0 1 Y N N N N N -19.674 33.212 -51.729 5.832 5.045 1.679 N7 A1JJO 42 A1JJO N8 N8 N 1 1 N N N N N N -20.527 30.805 -54.283 5.247 2.435 -0.751 N8 A1JJO 43 A1JJO O6 O2 O 0 1 N N N N N N -13.085 36.849 -53.501 -3.981 0.497 0.515 O6 A1JJO 44 A1JJO O1 O3 O 0 1 N N N N N N -19.837 30.296 -55.163 6.117 1.588 -0.658 O1 A1JJO 45 A1JJO O11 O4 O -1 1 N N N N N N -21.715 30.535 -54.126 4.364 2.311 -1.580 O11 A1JJO 46 A1JJO O1B O5 O 0 1 N N N N N N -14.080 38.807 -51.839 -3.191 1.288 -2.014 O1B A1JJO 47 A1JJO O4 O6 O 0 1 N N N N N N -10.420 39.470 -55.419 -8.094 0.715 0.071 O4 A1JJO 48 A1JJO O10 O7 O 0 1 N N N N N N -8.253 37.091 -54.950 -8.386 -1.795 1.055 O10 A1JJO 49 A1JJO O3 O8 O 0 1 N N N N N N -10.132 35.411 -52.610 -4.579 -3.062 -0.118 O3 A1JJO 50 A1JJO O8 O9 O 0 1 N N N N N N -12.485 36.824 -50.216 -1.849 -0.783 0.765 O8 A1JJO 51 A1JJO O2 O10 O 0 1 N N N N N N -13.754 33.394 -50.498 -0.127 -5.163 1.443 O2 A1JJO 52 A1JJO O5 O11 O 0 1 N N N N N N -18.230 31.509 -56.439 1.643 4.809 1.142 O5 A1JJO 53 A1JJO H31 H31 H 0 1 N N N N N N -11.938 37.868 -52.132 -4.451 -0.613 -1.163 H31 A1JJO 54 A1JJO H5 H2 H 0 1 N N N N N N -10.654 36.878 -54.701 -6.242 -0.713 1.308 H5 A1JJO 55 A1JJO H7 H3 H 0 1 N N N N N N -12.157 35.032 -52.390 -4.109 -1.951 1.560 H7 A1JJO 56 A1JJO H111 H111 H 0 0 N N N N N N -6.204 37.727 -53.635 -7.958 -3.750 -1.484 H111 A1JJO 57 A1JJO H112 H112 H 0 0 N N N N N N -7.112 39.075 -52.869 -8.616 -4.287 0.080 H112 A1JJO 58 A1JJO H113 H113 H 0 0 N N N N N N -7.099 37.451 -52.102 -9.549 -3.166 -0.940 H113 A1JJO 59 A1JJO H8 H8 H 0 1 N N N N N N -10.453 36.527 -50.392 -2.320 -1.893 -0.913 H8 A1JJO 60 A1JJO H91 H10 H 0 1 N N N N N N -11.382 33.859 -50.635 -1.978 -3.231 1.809 H91 A1JJO 61 A1JJO H92 H11 H 0 1 N N N N N N -10.444 34.614 -49.302 -2.302 -4.071 0.274 H92 A1JJO 62 A1JJO H12 H12 H 0 1 N N N N N N -13.677 34.808 -46.819 2.172 -6.135 1.490 H12 A1JJO 63 A1JJO H13 H13 H 0 1 N N N N N N -15.593 34.938 -45.303 4.576 -6.144 0.985 H13 A1JJO 64 A1JJO H14 H14 H 0 1 N N N N N N -16.174 33.081 -49.819 1.771 -2.357 -0.504 H14 A1JJO 65 A1JJO H15 H15 H 0 1 N N N N N N -19.539 33.288 -47.139 5.942 -2.370 -1.362 H15 A1JJO 66 A1JJO H16 H16 H 0 1 N N N N N N -19.004 35.324 -42.692 8.748 -6.151 0.110 H16 A1JJO 67 A1JJO H17 H17 H 0 1 N N N N N N -21.462 33.461 -45.622 8.351 -2.390 -1.864 H17 A1JJO 68 A1JJO H18 H18 H 0 1 N N N N N N -21.201 34.479 -43.400 9.749 -4.275 -1.127 H18 A1JJO 69 A1JJO H19 H19 H 0 1 N N N N N N -17.659 36.552 -55.445 -1.941 4.866 -0.476 H19 A1JJO 70 A1JJO H20 H20 H 0 1 N N N N N N -18.187 33.924 -56.539 0.491 5.179 -1.189 H20 A1JJO 71 A1JJO H21 H21 H 0 1 N N N N N N -18.701 33.749 -54.827 1.078 3.690 -1.969 H21 A1JJO 72 A1JJO H22 H22 H 0 1 N N N N N N -16.338 32.181 -55.866 2.224 3.075 0.181 H22 A1JJO 73 A1JJO H23 H23 H 0 1 N N N N N N -17.610 30.518 -54.255 3.391 4.303 -1.674 H23 A1JJO 74 A1JJO H24 H24 H 0 1 N N N N N N -16.558 31.819 -53.599 2.976 5.837 -0.873 H24 A1JJO 75 A1JJO H25 H25 H 0 1 N N N N N N -17.461 34.438 -51.158 4.437 7.602 0.891 H25 A1JJO 76 A1JJO H26 H26 H 0 1 N N N N N N -16.498 33.019 -51.694 2.972 6.677 1.299 H26 A1JJO 77 A1JJO H27 H27 H 0 1 N N N N N N -16.914 34.316 -52.865 4.200 6.994 2.547 H27 A1JJO 78 A1JJO H28 H28 H 0 1 N N N N N N -18.093 33.239 -48.309 4.177 -2.366 -1.001 H28 A1JJO 79 A1JJO H29 H29 H 0 1 N N N N N N -17.063 35.131 -44.185 6.340 -6.150 0.617 H29 A1JJO 80 A1JJO H32 H30 H 0 1 N N N N N N -13.131 39.549 -55.498 -6.122 1.827 1.437 H32 A1JJO 81 A1JJO H2 H31 H 0 1 N N N N N N -12.584 37.892 -55.925 -6.372 2.783 -0.045 H2 A1JJO 82 A1JJO H3 H32 H 0 1 N N N N N N -21.611 32.302 -52.109 7.026 3.274 1.354 H3 A1JJO 83 A1JJO H4 H33 H 0 1 N N N N N N -11.495 39.614 -53.660 -6.607 0.717 -1.367 H4 A1JJO 84 A1JJO HN5 H34 H 0 1 N N N N N N -9.497 38.277 -52.341 -6.339 -2.166 -1.224 HN5 A1JJO 85 A1JJO HO1B H36 H 0 0 N N N N N N -14.245 39.580 -51.312 -3.104 1.370 -2.974 HO1B A1JJO 86 A1JJO HO4 H37 H 0 1 N N N N N N -9.590 39.631 -54.985 -8.546 1.519 -0.218 HO4 A1JJO 87 A1JJO HO7 H38 H 0 1 N N N N N N -9.869 34.617 -52.160 -4.489 -3.099 -1.080 HO7 A1JJO 88 A1JJO HO8 H39 H 0 1 N N N N N N -12.454 36.935 -49.273 -1.939 -0.746 1.727 HO8 A1JJO 89 A1JJO H40 H40 H 0 1 N N N N N N -18.879 31.018 -55.950 1.414 5.738 1.005 H40 A1JJO 90 A1JJO H1 H1 H 0 1 N N N N N N -15.032 38.074 -55.691 -4.177 3.844 0.428 H1 A1JJO 91 A1JJO H6 H6 H 0 1 N N N N N N -15.773 38.297 -54.070 -3.808 2.779 1.805 H6 A1JJO 92 A1JJO H9 H9 H 0 1 N N N N N N -12.419 34.793 -48.045 -0.001 -2.466 -0.058 H9 A1JJO 93 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JJO O5 C29 SING N N 1 A1JJO C29 C28 SING N N 2 A1JJO C29 C30 SING N N 3 A1JJO C28 N1 SING N N 4 A1JJO O4 C4 SING N N 5 A1JJO O1 N8 DOUB N N 6 A1JJO C27 N1 SING Y N 7 A1JJO C27 C26 DOUB Y N 8 A1JJO N1 N4 SING Y N 9 A1JJO C3 C4 SING N N 10 A1JJO C3 C2 SING N N 11 A1JJO O10 C8 DOUB N N 12 A1JJO C26 C10 SING N N 13 A1JJO C26 N3 SING Y N 14 A1JJO N4 N3 DOUB Y N 15 A1JJO C10 C2 SING N N 16 A1JJO C4 C5 SING N N 17 A1JJO N8 O11 SING N N 18 A1JJO N8 C32 SING N N 19 A1JJO C30 N6 SING N N 20 A1JJO C2 O6 SING N N 21 A1JJO C2 C1 SING N N 22 A1JJO C5 N5 SING N N 23 A1JJO C5 C11 SING N N 24 A1JJO C8 N5 SING N N 25 A1JJO C8 C12 SING N N 26 A1JJO O6 C11 SING N N 27 A1JJO O1A C1 DOUB N N 28 A1JJO C32 N6 SING Y N 29 A1JJO C32 C34 DOUB Y N 30 A1JJO N6 C31 SING Y N 31 A1JJO C1 O1B SING N N 32 A1JJO C11 C7 SING N N 33 A1JJO O3 C7 SING N N 34 A1JJO C34 N7 SING Y N 35 A1JJO C31 C33 SING N N 36 A1JJO C31 N7 DOUB Y N 37 A1JJO C7 C6 SING N N 38 A1JJO C6 O8 SING N N 39 A1JJO C6 C9 SING N N 40 A1JJO O2 C13 DOUB N N 41 A1JJO C9 N2 SING N N 42 A1JJO C13 N2 SING N N 43 A1JJO C13 C14 SING N N 44 A1JJO C20 C14 DOUB Y N 45 A1JJO C20 C19 SING Y N 46 A1JJO C14 C15 SING Y N 47 A1JJO C19 C17 DOUB Y N 48 A1JJO C15 C16 DOUB Y N 49 A1JJO C17 C16 SING Y N 50 A1JJO C17 C18 SING N N 51 A1JJO C21 C18 DOUB Y N 52 A1JJO C21 C24 SING Y N 53 A1JJO C18 C22 SING Y N 54 A1JJO C24 C25 DOUB Y N 55 A1JJO C22 C23 DOUB Y N 56 A1JJO C25 C23 SING Y N 57 A1JJO C11 H31 SING N N 58 A1JJO C5 H5 SING N N 59 A1JJO C7 H7 SING N N 60 A1JJO C12 H111 SING N N 61 A1JJO C12 H112 SING N N 62 A1JJO C12 H113 SING N N 63 A1JJO C6 H8 SING N N 64 A1JJO C9 H91 SING N N 65 A1JJO C9 H92 SING N N 66 A1JJO C15 H12 SING N N 67 A1JJO C16 H13 SING N N 68 A1JJO C20 H14 SING N N 69 A1JJO C21 H15 SING N N 70 A1JJO C23 H16 SING N N 71 A1JJO C24 H17 SING N N 72 A1JJO C25 H18 SING N N 73 A1JJO C27 H19 SING N N 74 A1JJO C28 H20 SING N N 75 A1JJO C28 H21 SING N N 76 A1JJO C29 H22 SING N N 77 A1JJO C30 H23 SING N N 78 A1JJO C30 H24 SING N N 79 A1JJO C33 H25 SING N N 80 A1JJO C33 H26 SING N N 81 A1JJO C33 H27 SING N N 82 A1JJO C19 H28 SING N N 83 A1JJO C22 H29 SING N N 84 A1JJO C3 H32 SING N N 85 A1JJO C3 H2 SING N N 86 A1JJO C34 H3 SING N N 87 A1JJO C4 H4 SING N N 88 A1JJO N5 HN5 SING N N 89 A1JJO O1B HO1B SING N N 90 A1JJO O4 HO4 SING N N 91 A1JJO O3 HO7 SING N N 92 A1JJO O8 HO8 SING N N 93 A1JJO O5 H40 SING N N 94 A1JJO C10 H1 SING N N 95 A1JJO C10 H6 SING N N 96 A1JJO N2 H9 SING N N 97 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JJO InChI InChI 1.06 "InChI=1S/C34H40N8O11/c1-19-35-15-28(42(51)52)41(19)18-25(44)17-40-16-24(38-39-40)12-34(33(49)50)13-26(45)29(37-20(2)43)31(53-34)30(47)27(46)14-36-32(48)23-10-8-22(9-11-23)21-6-4-3-5-7-21/h3-11,15-16,25-27,29-31,44-47H,12-14,17-18H2,1-2H3,(H,36,48)(H,37,43)(H,49,50)/t25-,26-,27-,29+,30-,31+,34+/m0/s1" A1JJO InChIKey InChI 1.06 FRIYQLBYRJJVKV-OVWAZNNTSA-N A1JJO SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@@H]1[C@@H](O)C[C@@](Cc2cn(C[C@H](O)Cn3c(C)ncc3[N](=O)=O)nn2)(O[C@H]1[C@@H](O)[C@@H](O)CNC(=O)c4ccc(cc4)c5ccccc5)C(O)=O" A1JJO SMILES CACTVS 3.385 "CC(=O)N[CH]1[CH](O)C[C](Cc2cn(C[CH](O)Cn3c(C)ncc3[N](=O)=O)nn2)(O[CH]1[CH](O)[CH](O)CNC(=O)c4ccc(cc4)c5ccccc5)C(O)=O" A1JJO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ncc(n1C[C@H](Cn2cc(nn2)C[C@@]3(C[C@@H]([C@H]([C@@H](O3)[C@H]([C@H](CNC(=O)c4ccc(cc4)c5ccccc5)O)O)NC(=O)C)O)C(=O)O)O)N(=O)=O" A1JJO SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ncc(n1CC(Cn2cc(nn2)CC3(CC(C(C(O3)C(C(CNC(=O)c4ccc(cc4)c5ccccc5)O)O)NC(=O)C)O)C(=O)O)O)N(=O)=O" # _pdbx_chem_comp_identifier.comp_id A1JJO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},4~{S},5~{R},6~{R})-5-acetamido-6-[(1~{S},2~{S})-1,2-bis(oxidanyl)-3-[(4-phenylphenyl)carbonylamino]propyl]-2-[[1-[(2~{R})-3-(2-methyl-5-nitro-imidazol-1-yl)-2-oxidanyl-propyl]-1,2,3-triazol-4-yl]methyl]-4-oxidanyl-oxane-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JJO "Create component" 2025-07-07 PDBE A1JJO "Other modification" 2025-12-04 RCSB A1JJO "Initial release" 2025-12-10 RCSB #