data_A1JJV # _chem_comp.id A1JJV _chem_comp.name "2-((3-(benzyloxy)phenyl)thio)propanoyl-CoA" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C37 H50 N7 O18 P3 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-(3-phenylmethoxyphenyl)sulfanylpropanethioate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-07-16 _chem_comp.pdbx_modified_date 2026-07-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1037.880 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JJV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RYY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JJV C4 C1 C 0 1 Y N N N N N -31.661 95.475 -27.572 15.440 0.993 1.719 C4 A1JJV 1 A1JJV C14 C2 C 0 1 Y N N N N N -26.714 99.858 -28.680 16.573 -5.058 -1.874 C14 A1JJV 2 A1JJV C5 C3 C 0 1 Y N N N N N -32.045 96.701 -28.102 16.655 0.429 1.380 C5 A1JJV 3 A1JJV C6 C4 C 0 1 Y N N N N N -31.190 97.788 -28.110 16.710 -0.867 0.905 C6 A1JJV 4 A1JJV C11 C5 C 0 1 Y N N N N N -26.547 102.633 -28.806 16.697 -7.167 -0.091 C11 A1JJV 5 A1JJV C7 C6 C 0 1 Y N N N N N -29.914 97.655 -27.563 15.544 -1.608 0.766 C7 A1JJV 6 A1JJV C8 C7 C 0 1 N N N N N N -29.146 99.964 -27.987 16.893 -3.397 -0.029 C8 A1JJV 7 A1JJV C9 C8 C 0 1 Y N N N N N -27.841 100.619 -28.367 16.759 -4.813 -0.526 C9 A1JJV 8 A1JJV C10 C9 C 0 1 Y N N N N N -27.746 102.012 -28.439 16.820 -5.868 0.365 C10 A1JJV 9 A1JJV C12 C10 C 0 1 Y N N N N N -25.431 101.864 -29.107 16.501 -7.411 -1.437 C12 A1JJV 10 A1JJV C13 C11 C 0 1 Y N N N N N -25.511 100.478 -29.039 16.444 -6.357 -2.330 C13 A1JJV 11 A1JJV N1 N1 N 0 1 N N N N N N -33.728 88.157 -28.802 5.804 3.439 -0.307 N1 A1JJV 12 A1JJV N2 N2 N 0 1 N N N N N N -34.751 86.858 -32.103 1.123 4.848 -0.741 N2 A1JJV 13 A1JJV C3 C12 C 0 1 Y N N N N N -30.382 95.324 -27.026 14.270 0.256 1.582 C3 A1JJV 14 A1JJV N3 N3 N 0 1 Y N N N N N -35.609 90.666 -42.531 -8.739 -4.164 -0.396 N3 A1JJV 15 A1JJV C1 C13 C 0 1 N N N N N N -31.115 92.899 -24.039 12.976 2.731 -0.059 C1 A1JJV 16 A1JJV C2 C14 C 0 1 N N R N N N -31.156 92.840 -25.559 12.091 1.584 0.433 C2 A1JJV 17 A1JJV S1 S1 S 0 1 N N N N N N -29.786 93.783 -26.328 12.720 0.972 2.020 S1 A1JJV 18 A1JJV O1 O1 O 0 1 N N N N N N -28.927 98.622 -27.502 15.601 -2.883 0.299 O1 A1JJV 19 A1JJV C15 C15 C 0 1 Y N N N N N -29.519 96.426 -27.030 14.323 -1.047 1.105 C15 A1JJV 20 A1JJV C16 C16 C 0 1 N N N N N N -31.313 91.410 -26.042 10.679 2.081 0.611 C16 A1JJV 21 A1JJV O2 O2 O 0 1 N N N N N N -31.695 90.457 -25.347 10.300 2.456 1.701 O2 A1JJV 22 A1JJV S2 S2 S 0 1 N N N N N N -31.069 91.208 -27.799 9.609 2.115 -0.725 S2 A1JJV 23 A1JJV C17 C17 C 0 1 N N N N N N -31.815 89.559 -28.035 8.128 2.779 0.075 C17 A1JJV 24 A1JJV C18 C18 C 0 1 N N N N N N -33.262 89.522 -28.564 7.003 2.902 -0.955 C18 A1JJV 25 A1JJV C19 C19 C 0 1 N N N N N N -33.245 87.467 -29.841 4.680 3.635 -1.026 C19 A1JJV 26 A1JJV O3 O3 O 0 1 N N N N N N -32.457 87.987 -30.639 4.662 3.367 -2.208 O3 A1JJV 27 A1JJV C20 C20 C 0 1 N N N N N N -33.713 86.048 -29.988 3.447 4.188 -0.359 C20 A1JJV 28 A1JJV C21 C21 C 0 1 N N N N N N -34.158 85.718 -31.415 2.322 4.311 -1.389 C21 A1JJV 29 A1JJV C22 C22 C 0 1 N N N N N N -36.013 87.253 -31.933 -0.000 5.044 -1.459 C22 A1JJV 30 A1JJV O4 O4 O 0 1 N N N N N N -36.776 86.746 -31.094 0.008 4.865 -2.659 O4 A1JJV 31 A1JJV C23 C23 C 0 1 N N R N N N -36.478 88.387 -32.854 -1.267 5.484 -0.772 C23 A1JJV 32 A1JJV O5 O5 O 0 1 N N N N N N -35.499 88.754 -33.833 -0.987 5.781 0.598 O5 A1JJV 33 A1JJV C24 C24 C 0 1 N N N N N N -36.754 89.722 -32.088 -2.305 4.363 -0.849 C24 A1JJV 34 A1JJV C25 C25 C 0 1 N N N N N N -37.804 89.463 -30.998 -2.653 4.090 -2.313 C25 A1JJV 35 A1JJV C26 C26 C 0 1 N N N N N N -35.445 90.273 -31.498 -1.733 3.094 -0.215 C26 A1JJV 36 A1JJV C27 C27 C 0 1 N N N N N N -37.247 90.828 -33.046 -3.568 4.785 -0.095 C27 A1JJV 37 A1JJV O6 O6 O 0 1 N N N N N N -38.501 90.369 -33.612 -4.538 3.738 -0.167 O6 A1JJV 38 A1JJV P1 P1 P 0 1 N N N N N N -39.021 90.846 -35.053 -5.991 3.841 0.519 P1 A1JJV 39 A1JJV O7 O7 O 0 1 N N N N N N -40.384 90.231 -35.041 -5.826 3.913 2.119 O7 A1JJV 40 A1JJV O8 O8 O 0 1 N N N N N N -38.518 92.219 -35.285 -6.679 5.060 0.039 O8 A1JJV 41 A1JJV O9 O9 O 0 1 N N N N N N -38.117 89.976 -36.059 -6.862 2.544 0.128 O9 A1JJV 42 A1JJV P2 P2 P 0 1 N N N N N N -38.202 88.424 -36.443 -8.438 2.216 0.121 P2 A1JJV 43 A1JJV O10 O10 O 0 1 N N N N N N -36.898 87.781 -36.118 -9.070 2.807 1.322 O10 A1JJV 44 A1JJV O11 O11 O 0 1 N N N N N N -39.404 87.649 -36.022 -9.111 2.839 -1.202 O11 A1JJV 45 A1JJV O12 O12 O 0 1 N N N N N N -38.173 88.653 -38.032 -8.653 0.620 0.132 O12 A1JJV 46 A1JJV C28 C28 C 0 1 N N N N N N -37.534 89.855 -38.544 -9.941 0.009 0.233 C28 A1JJV 47 A1JJV C29 C29 C 0 1 N N S N N N -37.317 89.670 -40.023 -9.787 -1.513 0.214 C29 A1JJV 48 A1JJV O13 O13 O 0 1 N N N N N N -37.035 90.917 -40.685 -9.334 -1.956 -1.084 O13 A1JJV 49 A1JJV C30 C30 C 0 1 N N R N N N -36.984 90.517 -42.063 -9.693 -3.353 -1.156 C30 A1JJV 50 A1JJV C31 C31 C 0 1 Y N N N N N -34.405 90.404 -41.923 -7.890 -3.716 0.572 C31 A1JJV 51 A1JJV N4 N4 N 0 1 Y N N N N N -33.367 90.781 -42.632 -7.184 -4.706 1.037 N4 A1JJV 52 A1JJV C32 C32 C 0 1 Y N N N N N -33.924 91.335 -43.773 -7.533 -5.848 0.398 C32 A1JJV 53 A1JJV C33 C33 C 0 1 Y N N N N N -33.357 91.922 -44.916 -7.125 -7.191 0.479 C33 A1JJV 54 A1JJV N5 N5 N 0 1 N N N N N N -32.052 92.108 -45.089 -6.139 -7.578 1.370 N5 A1JJV 55 A1JJV N6 N6 N 0 1 Y N N N N N -34.207 92.398 -45.860 -7.708 -8.079 -0.318 N6 A1JJV 56 A1JJV C34 C34 C 0 1 Y N N N N N -35.522 92.243 -45.683 -8.651 -7.719 -1.170 C34 A1JJV 57 A1JJV N7 N7 N 0 1 Y N N N N N -36.166 91.704 -44.658 -9.064 -6.474 -1.281 N7 A1JJV 58 A1JJV C35 C35 C 0 1 Y N N N N N -35.304 91.269 -43.723 -8.539 -5.516 -0.525 C35 A1JJV 59 A1JJV C36 C36 C 0 1 N N R N N N -37.583 89.117 -42.200 -11.097 -3.433 -0.515 C36 A1JJV 60 A1JJV O14 O14 O 0 1 N N N N N N -38.364 89.029 -43.366 -12.110 -3.362 -1.520 O14 A1JJV 61 A1JJV C37 C37 C 0 1 N N S N N N -38.408 89.070 -40.923 -11.160 -2.195 0.410 C37 A1JJV 62 A1JJV O15 O15 O 0 1 N N N N N N -39.607 89.859 -41.052 -12.214 -1.320 0.004 O15 A1JJV 63 A1JJV P3 P3 P 0 1 N N N N N N -41.097 89.295 -41.367 -13.427 -0.899 0.975 P3 A1JJV 64 A1JJV O16 O16 O 0 1 N N N N N N -41.551 88.227 -40.383 -14.492 -0.015 0.152 O16 A1JJV 65 A1JJV O17 O17 O 0 1 N N N N N N -41.006 88.709 -42.730 -14.091 -2.116 1.492 O17 A1JJV 66 A1JJV O18 O18 O 0 1 N N N N N N -42.038 90.463 -41.370 -12.853 -0.036 2.207 O18 A1JJV 67 A1JJV H1 H1 H 0 1 N N N N N N -32.348 94.642 -27.582 15.400 2.005 2.094 H1 A1JJV 68 A1JJV H2 H2 H 0 1 N N N N N N -26.770 98.780 -28.645 16.525 -4.234 -2.571 H2 A1JJV 69 A1JJV H3 H3 H 0 1 N N N N N N -33.036 96.808 -28.518 17.564 1.003 1.487 H3 A1JJV 70 A1JJV H4 H4 H 0 1 N N N N N N -31.507 98.729 -28.535 17.662 -1.305 0.642 H4 A1JJV 71 A1JJV H5 H5 H 0 1 N N N N N N -26.490 103.710 -28.855 16.745 -7.991 0.606 H5 A1JJV 72 A1JJV H6 H6 H 0 1 N N N N N N -29.630 100.558 -27.198 17.526 -3.382 0.858 H6 A1JJV 73 A1JJV H7 H7 H 0 1 N N N N N N -29.800 99.925 -28.870 17.342 -2.780 -0.807 H7 A1JJV 74 A1JJV H8 H8 H 0 1 N N N N N N -28.610 102.617 -28.208 16.964 -5.677 1.418 H8 A1JJV 75 A1JJV H9 H9 H 0 1 N N N N N N -24.505 102.341 -29.393 16.400 -8.426 -1.793 H9 A1JJV 76 A1JJV H10 H10 H 0 1 N N N N N N -24.642 99.877 -29.264 16.291 -6.548 -3.382 H10 A1JJV 77 A1JJV H11 H11 H 0 1 N N N N N N -34.403 87.742 -28.192 5.819 3.654 0.638 H11 A1JJV 78 A1JJV H12 H12 H 0 1 N N N N N N -34.178 87.374 -32.740 1.138 5.063 0.205 H12 A1JJV 79 A1JJV H13 H13 H 0 1 N N N N N N -31.954 92.320 -23.626 14.011 2.392 -0.116 H13 A1JJV 80 A1JJV H14 H14 H 0 1 N N N N N N -30.166 92.474 -23.681 12.643 3.049 -1.046 H14 A1JJV 81 A1JJV H15 H15 H 0 1 N N N N N N -31.195 93.946 -23.711 12.906 3.568 0.636 H15 A1JJV 82 A1JJV H16 H16 H 0 1 N N N N N N -32.059 93.383 -25.874 12.102 0.776 -0.299 H16 A1JJV 83 A1JJV H17 H17 H 0 1 N N N N N N -28.528 96.324 -26.613 13.416 -1.622 0.997 H17 A1JJV 84 A1JJV H18 H18 H 0 1 N N N N N N -31.803 89.046 -27.062 7.815 2.108 0.875 H18 A1JJV 85 A1JJV H19 H19 H 0 1 N N N N N N -31.185 89.008 -28.749 8.349 3.762 0.491 H19 A1JJV 86 A1JJV H20 H20 H 0 1 N N N N N N -33.308 90.082 -29.510 6.782 1.920 -1.371 H20 A1JJV 87 A1JJV H21 H21 H 0 1 N N N N N N -33.922 89.998 -27.824 7.315 3.574 -1.755 H21 A1JJV 88 A1JJV H22 H22 H 0 1 N N N N N N -34.562 85.885 -29.308 3.135 3.516 0.441 H22 A1JJV 89 A1JJV H23 H23 H 0 1 N N N N N N -32.888 85.375 -29.712 3.668 5.170 0.057 H23 A1JJV 90 A1JJV H24 H24 H 0 1 N N N N N N -34.902 84.908 -31.372 2.101 3.328 -1.805 H24 A1JJV 91 A1JJV H25 H25 H 0 1 N N N N N N -33.281 85.381 -31.987 2.635 4.982 -2.189 H25 A1JJV 92 A1JJV H26 H26 H 0 1 N N N N N N -37.409 88.076 -33.351 -1.657 6.375 -1.264 H26 A1JJV 93 A1JJV H27 H27 H 0 1 N N N N N N -35.802 88.498 -34.696 -0.636 5.032 1.099 H27 A1JJV 94 A1JJV H28 H28 H 0 1 N N N N N N -37.444 88.674 -30.321 -1.793 3.649 -2.815 H28 A1JJV 95 A1JJV H29 H29 H 0 1 N N N N N N -37.974 90.387 -30.426 -3.497 3.401 -2.364 H29 A1JJV 96 A1JJV H30 H30 H 0 1 N N N N N N -38.747 89.142 -31.466 -2.919 5.026 -2.804 H30 A1JJV 97 A1JJV H31 H31 H 0 1 N N N N N N -35.021 89.540 -30.796 -1.485 3.288 0.828 H31 A1JJV 98 A1JJV H32 H32 H 0 1 N N N N N N -34.727 90.460 -32.310 -2.473 2.295 -0.270 H32 A1JJV 99 A1JJV H33 H33 H 0 1 N N N N N N -35.650 91.214 -30.966 -0.834 2.793 -0.752 H33 A1JJV 100 A1JJV H34 H34 H 0 1 N N N N N N -36.509 90.992 -33.845 -3.320 4.980 0.949 H34 A1JJV 101 A1JJV H35 H35 H 0 1 N N N N N N -37.403 91.766 -32.492 -3.976 5.690 -0.546 H35 A1JJV 102 A1JJV H36 H36 H 0 1 N N N N N N -41.035 90.898 -35.226 -5.382 3.144 2.504 H36 A1JJV 103 A1JJV H37 H37 H 0 1 N N N N N N -39.130 86.843 -35.600 -8.744 2.497 -2.028 H37 A1JJV 104 A1JJV H38 H38 H 0 1 N N N N N N -36.568 90.008 -38.041 -10.416 0.315 1.166 H38 A1JJV 105 A1JJV H39 H39 H 0 1 N N N N N N -38.181 90.727 -38.367 -10.559 0.323 -0.608 H39 A1JJV 106 A1JJV H40 H40 H 0 1 N N N N N N -36.432 89.027 -40.136 -9.091 -1.832 0.989 H40 A1JJV 107 A1JJV H41 H41 H 0 1 N N N N N N -37.618 91.201 -42.646 -9.729 -3.682 -2.194 H41 A1JJV 108 A1JJV H42 H42 H 0 1 N N N N N N -34.321 89.933 -40.955 -7.815 -2.691 0.905 H42 A1JJV 109 A1JJV H43 H43 H 0 1 N N N N N N -31.896 92.602 -45.944 -5.721 -6.920 1.947 H43 A1JJV 110 A1JJV H44 H44 H 0 1 N N N N N N -31.687 92.641 -44.325 -5.866 -8.508 1.417 H44 A1JJV 111 A1JJV H45 H45 H 0 1 N N N N N N -36.146 92.607 -46.486 -9.098 -8.473 -1.800 H45 A1JJV 112 A1JJV H46 H46 H 0 1 N N N N N N -36.789 88.357 -42.173 -11.198 -4.348 0.068 H46 A1JJV 113 A1JJV H47 H47 H 0 1 N N N N N N -39.277 88.918 -43.128 -12.079 -4.084 -2.162 H47 A1JJV 114 A1JJV H48 H48 H 0 1 N N N N N N -38.624 88.031 -40.633 -11.293 -2.499 1.448 H48 A1JJV 115 A1JJV H49 H49 H 0 1 N N N N N N -41.682 87.407 -40.844 -15.251 0.274 0.676 H49 A1JJV 116 A1JJV H50 H50 H 0 1 N N N N N N -42.384 90.589 -42.246 -12.404 0.778 1.942 H50 A1JJV 117 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JJV N6 C34 SING Y N 1 A1JJV N6 C33 DOUB Y N 2 A1JJV C34 N7 DOUB Y N 3 A1JJV N5 C33 SING N N 4 A1JJV C33 C32 SING Y N 5 A1JJV N7 C35 SING Y N 6 A1JJV C32 C35 DOUB Y N 7 A1JJV C32 N4 SING Y N 8 A1JJV C35 N3 SING Y N 9 A1JJV O14 C36 SING N N 10 A1JJV O17 P3 DOUB N N 11 A1JJV N4 C31 DOUB Y N 12 A1JJV N3 C30 SING N N 13 A1JJV N3 C31 SING Y N 14 A1JJV C36 C30 SING N N 15 A1JJV C36 C37 SING N N 16 A1JJV C30 O13 SING N N 17 A1JJV O18 P3 SING N N 18 A1JJV P3 O15 SING N N 19 A1JJV P3 O16 SING N N 20 A1JJV O15 C37 SING N N 21 A1JJV C37 C29 SING N N 22 A1JJV O13 C29 SING N N 23 A1JJV C29 C28 SING N N 24 A1JJV C28 O12 SING N N 25 A1JJV O12 P2 SING N N 26 A1JJV P2 O10 DOUB N N 27 A1JJV P2 O9 SING N N 28 A1JJV P2 O11 SING N N 29 A1JJV O9 P1 SING N N 30 A1JJV O8 P1 DOUB N N 31 A1JJV P1 O7 SING N N 32 A1JJV P1 O6 SING N N 33 A1JJV O5 C23 SING N N 34 A1JJV O6 C27 SING N N 35 A1JJV C27 C24 SING N N 36 A1JJV C23 C24 SING N N 37 A1JJV C23 C22 SING N N 38 A1JJV N2 C22 SING N N 39 A1JJV N2 C21 SING N N 40 A1JJV C24 C26 SING N N 41 A1JJV C24 C25 SING N N 42 A1JJV C22 O4 DOUB N N 43 A1JJV C21 C20 SING N N 44 A1JJV O3 C19 DOUB N N 45 A1JJV C20 C19 SING N N 46 A1JJV C19 N1 SING N N 47 A1JJV C12 C13 DOUB Y N 48 A1JJV C12 C11 SING Y N 49 A1JJV C13 C14 SING Y N 50 A1JJV C11 C10 DOUB Y N 51 A1JJV N1 C18 SING N N 52 A1JJV C14 C9 DOUB Y N 53 A1JJV C18 C17 SING N N 54 A1JJV C10 C9 SING Y N 55 A1JJV C9 C8 SING N N 56 A1JJV C6 C5 DOUB Y N 57 A1JJV C6 C7 SING Y N 58 A1JJV C5 C4 SING Y N 59 A1JJV C17 S2 SING N N 60 A1JJV C8 O1 SING N N 61 A1JJV S2 C16 SING N N 62 A1JJV C4 C3 DOUB Y N 63 A1JJV C7 O1 SING N N 64 A1JJV C7 C15 DOUB Y N 65 A1JJV C15 C3 SING Y N 66 A1JJV C3 S1 SING N N 67 A1JJV S1 C2 SING N N 68 A1JJV C16 C2 SING N N 69 A1JJV C16 O2 DOUB N N 70 A1JJV C2 C1 SING N N 71 A1JJV C4 H1 SING N N 72 A1JJV C14 H2 SING N N 73 A1JJV C5 H3 SING N N 74 A1JJV C6 H4 SING N N 75 A1JJV C11 H5 SING N N 76 A1JJV C8 H6 SING N N 77 A1JJV C8 H7 SING N N 78 A1JJV C10 H8 SING N N 79 A1JJV C12 H9 SING N N 80 A1JJV C13 H10 SING N N 81 A1JJV N1 H11 SING N N 82 A1JJV N2 H12 SING N N 83 A1JJV C1 H13 SING N N 84 A1JJV C1 H14 SING N N 85 A1JJV C1 H15 SING N N 86 A1JJV C2 H16 SING N N 87 A1JJV C15 H17 SING N N 88 A1JJV C17 H18 SING N N 89 A1JJV C17 H19 SING N N 90 A1JJV C18 H20 SING N N 91 A1JJV C18 H21 SING N N 92 A1JJV C20 H22 SING N N 93 A1JJV C20 H23 SING N N 94 A1JJV C21 H24 SING N N 95 A1JJV C21 H25 SING N N 96 A1JJV C23 H26 SING N N 97 A1JJV O5 H27 SING N N 98 A1JJV C25 H28 SING N N 99 A1JJV C25 H29 SING N N 100 A1JJV C25 H30 SING N N 101 A1JJV C26 H31 SING N N 102 A1JJV C26 H32 SING N N 103 A1JJV C26 H33 SING N N 104 A1JJV C27 H34 SING N N 105 A1JJV C27 H35 SING N N 106 A1JJV O7 H36 SING N N 107 A1JJV O11 H37 SING N N 108 A1JJV C28 H38 SING N N 109 A1JJV C28 H39 SING N N 110 A1JJV C29 H40 SING N N 111 A1JJV C30 H41 SING N N 112 A1JJV C31 H42 SING N N 113 A1JJV N5 H43 SING N N 114 A1JJV N5 H44 SING N N 115 A1JJV C34 H45 SING N N 116 A1JJV C36 H46 SING N N 117 A1JJV O14 H47 SING N N 118 A1JJV C37 H48 SING N N 119 A1JJV O16 H49 SING N N 120 A1JJV O18 H50 SING N N 121 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JJV InChI InChI 1.06 "InChI=1S/C37H50N7O18P3S2/c1-22(67-25-11-7-10-24(16-25)57-17-23-8-5-4-6-9-23)36(49)66-15-14-39-27(45)12-13-40-34(48)31(47)37(2,3)19-59-65(55,56)62-64(53,54)58-18-26-30(61-63(50,51)52)29(46)35(60-26)44-21-43-28-32(38)41-20-42-33(28)44/h4-11,16,20-22,26,29-31,35,46-47H,12-15,17-19H2,1-3H3,(H,39,45)(H,40,48)(H,53,54)(H,55,56)(H2,38,41,42)(H2,50,51,52)/t22-,26+,29-,30-,31+,35-/m1/s1" A1JJV InChIKey InChI 1.06 XBCPYKSQABTJSY-FNDVGQCGSA-N A1JJV SMILES_CANONICAL CACTVS 3.385 "C[C@@H](Sc1cccc(OCc2ccccc2)c1)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[C@@H]3O[C@H]([C@H](O)[C@@H]3O[P](O)(O)=O)n4cnc5c(N)ncnc45" A1JJV SMILES CACTVS 3.385 "C[CH](Sc1cccc(OCc2ccccc2)c1)C(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O[P](O)(O)=O)n4cnc5c(N)ncnc45" A1JJV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)Sc4cccc(c4)OCc5ccccc5" A1JJV SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)Sc4cccc(c4)OCc5ccccc5" # _pdbx_chem_comp_identifier.comp_id A1JJV _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-(3-phenylmethoxyphenyl)sulfanylpropanethioate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JJV "Create component" 2025-07-16 PDBE A1JJV "Initial release" 2026-07-29 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1JJV _pdbx_chem_comp_synonyms.name "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-(3-phenylmethoxyphenyl)sulfanylpropanethioate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #