data_A1JJX # _chem_comp.id A1JJX _chem_comp.name "2-(4-(3-Methoxybenzyloxy)phenylthiol)propanoyl-CoA" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C38 H52 N7 O19 P3 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-[4-[(3-methoxyphenyl)methoxy]phenyl]sulfanylpropanethioate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-07-16 _chem_comp.pdbx_modified_date 2026-07-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1067.906 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JJX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RZ0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JJX C4 C1 C 0 1 Y N N N N N -34.932 102.730 -28.425 20.362 -4.692 -0.396 C4 A1JJX 1 A1JJX C14 C2 C 0 1 N N N N N N -31.388 91.691 -26.008 9.826 1.677 1.124 C14 A1JJX 2 A1JJX C5 C3 C 0 1 Y N N N N N -34.590 101.394 -28.323 19.081 -4.342 -0.011 C5 A1JJX 3 A1JJX C6 C4 C 0 1 Y N N N N N -33.482 100.899 -28.997 18.286 -3.585 -0.852 C6 A1JJX 4 A1JJX C11 C5 C 0 1 Y N N N N N -30.437 95.604 -26.953 13.326 -0.475 1.642 C11 A1JJX 5 A1JJX C7 C6 C 0 1 N N N N N N -33.100 99.446 -28.903 16.890 -3.206 -0.429 C7 A1JJX 6 A1JJX C8 C7 C 0 1 Y N N N N N -31.362 98.055 -27.926 15.741 -1.470 0.721 C8 A1JJX 7 A1JJX C9 C8 C 0 1 Y N N N N N -32.043 96.878 -28.224 14.570 -2.183 0.506 C9 A1JJX 8 A1JJX C10 C9 C 0 1 Y N N N N N -31.586 95.667 -27.741 13.365 -1.685 0.960 C10 A1JJX 9 A1JJX C12 C10 C 0 1 N N R N N N -31.226 93.115 -25.487 11.236 1.216 0.862 C12 A1JJX 10 A1JJX C13 C11 C 0 1 N N N N N N -31.145 93.085 -23.973 12.158 2.432 0.753 C13 A1JJX 11 A1JJX N1 N1 N 0 1 N N N N N N -33.738 88.391 -28.685 5.014 3.366 0.460 N1 A1JJX 12 A1JJX N2 N2 N 0 1 N N N N N N -34.755 87.087 -32.128 0.376 4.960 0.280 N2 A1JJX 13 A1JJX C3 C12 C 0 1 Y N N N N N -34.178 103.590 -29.205 20.853 -4.281 -1.620 C3 A1JJX 14 A1JJX N3 N3 N 0 1 Y N N N N N -35.485 91.007 -42.638 -10.326 -4.020 1.126 N3 A1JJX 15 A1JJX C1 C13 C 0 1 N N N N N N -32.136 103.684 -32.067 21.875 -3.501 -3.998 C1 A1JJX 16 A1JJX O1 O1 O 0 1 N N N N N N -32.323 103.964 -30.676 20.539 -3.115 -3.670 O1 A1JJX 17 A1JJX C2 C14 C 0 1 Y N N N N N -33.076 103.104 -29.907 20.060 -3.516 -2.463 C2 A1JJX 18 A1JJX O2 O2 O 0 1 N N N N N N -31.762 99.292 -28.380 16.927 -1.959 0.268 O2 A1JJX 19 A1JJX S1 S1 S 0 1 N N N N N N -29.852 94.041 -26.326 11.790 0.158 2.228 S1 A1JJX 20 A1JJX O3 O3 O 0 1 N N N N N N -31.761 90.751 -25.302 9.407 1.733 2.261 O3 A1JJX 21 A1JJX S2 S2 S 0 1 N N N N N N -31.100 91.488 -27.745 8.814 2.120 -0.184 S2 A1JJX 22 A1JJX C15 C15 C 0 1 N N N N N N -31.764 89.819 -28.092 7.310 2.565 0.720 C15 A1JJX 23 A1JJX C16 C16 C 0 1 N N N N N N -33.264 89.748 -28.352 6.231 3.007 -0.271 C16 A1JJX 24 A1JJX C17 C17 C 0 1 N N N N N N -33.320 87.740 -29.772 3.924 3.789 -0.212 C17 A1JJX 25 A1JJX O4 O4 O 0 1 N N N N N N -32.528 88.259 -30.588 3.952 3.871 -1.422 O4 A1JJX 26 A1JJX C18 C18 C 0 1 N N N N N N -33.838 86.332 -29.934 2.672 4.158 0.540 C18 A1JJX 27 A1JJX C19 C19 C 0 1 N N N N N N -34.183 85.977 -31.376 1.593 4.601 -0.451 C19 A1JJX 28 A1JJX C20 C20 C 0 1 N N N N N N -35.969 87.578 -31.876 -0.714 5.382 -0.391 C20 A1JJX 29 A1JJX O5 O5 O 0 1 N N N N N N -36.695 87.158 -30.975 -0.659 5.551 -1.591 O5 A1JJX 30 A1JJX C21 C21 C 0 1 N N R N N N -36.435 88.723 -32.776 -2.000 5.645 0.348 C21 A1JJX 31 A1JJX O6 O6 O 0 1 N N N N N N -35.479 89.020 -33.797 -1.775 5.521 1.754 O6 A1JJX 32 A1JJX C22 C22 C 0 1 N N N N N N -36.709 90.046 -31.992 -3.057 4.630 -0.091 C22 A1JJX 33 A1JJX C23 C23 C 0 1 N N N N N N -37.724 89.791 -30.871 -3.405 4.860 -1.563 C23 A1JJX 34 A1JJX C24 C24 C 0 1 N N N N N N -35.429 90.620 -31.372 -2.509 3.213 0.089 C24 A1JJX 35 A1JJX C25 C25 C 0 1 N N N N N N -37.198 91.169 -32.930 -4.315 4.802 0.763 C25 A1JJX 36 A1JJX O7 O7 O 0 1 N N N N N N -38.487 90.816 -33.483 -5.303 3.854 0.353 O7 A1JJX 37 A1JJX P1 P1 P 0 1 N N N N N N -38.942 91.264 -34.952 -6.756 3.750 1.038 P1 A1JJX 38 A1JJX O8 O8 O 0 1 N N N N N N -38.660 92.702 -35.158 -7.421 5.072 0.987 O8 A1JJX 39 A1JJX O9 O9 O 0 1 N N N N N N -40.231 90.521 -34.978 -6.595 3.289 2.572 O9 A1JJX 40 A1JJX O10 O10 O 0 1 N N N N N N -38.003 90.533 -36.002 -7.648 2.670 0.243 O10 A1JJX 41 A1JJX P2 P2 P 0 1 N N N N N N -38.058 88.987 -36.450 -9.229 2.389 0.133 P2 A1JJX 42 A1JJX O11 O11 O 0 1 N N N N N N -36.735 88.368 -36.160 -9.855 2.564 1.463 O11 A1JJX 43 A1JJX O12 O12 O 0 1 N N N N N N -39.188 88.170 -35.922 -9.886 3.425 -0.910 O12 A1JJX 44 A1JJX O13 O13 O 0 1 N N N N N N -38.205 89.251 -38.023 -9.472 0.883 -0.382 O13 A1JJX 45 A1JJX C26 C26 C 0 1 N N N N N N -37.248 90.148 -38.678 -10.771 0.296 -0.484 C26 A1JJX 46 A1JJX C27 C27 C 0 1 N N R N N N -37.831 90.650 -39.984 -10.643 -1.138 -1.003 C27 A1JJX 47 A1JJX O14 O14 O 0 1 N N N N N N -36.788 91.296 -40.749 -9.975 -1.954 -0.026 O14 A1JJX 48 A1JJX C28 C28 C 0 1 N N R N N N -36.824 90.821 -42.091 -10.552 -3.274 -0.114 C28 A1JJX 49 A1JJX C29 C29 C 0 1 Y N N N N N -34.279 90.743 -42.038 -10.008 -3.488 2.341 C29 A1JJX 50 A1JJX N4 N4 N 0 1 Y N N N N N -33.247 91.122 -42.753 -9.880 -4.437 3.222 N4 A1JJX 51 A1JJX C30 C30 C 0 1 Y N N N N N -33.811 91.718 -43.868 -10.107 -5.635 2.631 C30 A1JJX 52 A1JJX C31 C31 C 0 1 Y N N N N N -33.241 92.340 -44.989 -10.114 -6.969 3.072 C31 A1JJX 53 A1JJX N5 N5 N 0 1 N N N N N N -31.930 92.501 -45.159 -9.832 -7.281 4.390 N5 A1JJX 54 A1JJX N6 N6 N 0 1 Y N N N N N -34.093 92.874 -45.900 -10.398 -7.925 2.193 N6 A1JJX 55 A1JJX C32 C32 C 0 1 Y N N N N N -35.411 92.730 -45.713 -10.668 -7.637 0.933 C32 A1JJX 56 A1JJX N7 N7 N 0 1 Y N N N N N -36.058 92.142 -44.713 -10.673 -6.403 0.475 N7 A1JJX 57 A1JJX C33 C33 C 0 1 Y N N N N N -35.192 91.660 -43.807 -10.402 -5.381 1.281 C33 A1JJX 58 A1JJX C34 C34 C 0 1 N N R N N N -37.349 89.404 -41.975 -12.063 -2.996 -0.317 C34 A1JJX 59 A1JJX O15 O15 O 0 1 N N N N N N -37.734 89.021 -43.272 -12.699 -4.092 -0.977 O15 A1JJX 60 A1JJX C35 C35 C 0 1 N N S N N N -38.452 89.606 -40.927 -12.043 -1.740 -1.228 C35 A1JJX 61 A1JJX O16 O16 O 0 1 N N N N N N -39.686 90.121 -41.427 -12.217 -2.113 -2.597 O16 A1JJX 62 A1JJX P3 P3 P 0 1 N N N N N N -41.140 89.396 -41.309 -13.424 -1.560 -3.508 P3 A1JJX 63 A1JJX O17 O17 O 0 1 N N N N N N -41.187 88.249 -40.306 -13.264 0.030 -3.705 O17 A1JJX 64 A1JJX O18 O18 O 0 1 N N N N N N -42.118 90.515 -40.962 -13.385 -2.285 -4.946 O18 A1JJX 65 A1JJX O19 O19 O 0 1 N N N N N N -41.335 88.715 -42.648 -14.715 -1.848 -2.845 O19 A1JJX 66 A1JJX C36 C36 C 0 1 Y N N N N N -29.761 96.792 -26.659 14.501 0.233 1.865 C36 A1JJX 67 A1JJX C37 C37 C 0 1 Y N N N N N -30.220 98.003 -27.139 15.704 -0.265 1.406 C37 A1JJX 68 A1JJX C38 C38 C 0 1 Y N N N N N -32.728 101.766 -29.785 18.771 -3.176 -2.079 C38 A1JJX 69 A1JJX H1 H1 H 0 1 N N N N N N -35.793 103.105 -27.892 20.980 -5.284 0.262 H1 A1JJX 70 A1JJX H2 H2 H 0 1 N N N N N N -35.189 100.732 -27.715 18.700 -4.661 0.948 H2 A1JJX 71 A1JJX H3 H3 H 0 1 N N N N N N -33.808 98.931 -28.237 16.257 -3.111 -1.311 H3 A1JJX 72 A1JJX H4 H4 H 0 1 N N N N N N -33.148 98.997 -29.906 16.487 -3.977 0.226 H4 A1JJX 73 A1JJX H5 H5 H 0 1 N N N N N N -32.933 96.912 -28.836 14.600 -3.121 -0.028 H5 A1JJX 74 A1JJX H6 H6 H 0 1 N N N N N N -32.124 94.760 -27.976 12.453 -2.236 0.786 H6 A1JJX 75 A1JJX H7 H7 H 0 1 N N N N N N -32.135 93.672 -25.760 11.267 0.651 -0.070 H7 A1JJX 76 A1JJX H8 H8 H 0 1 N N N N N N -31.997 92.517 -23.571 12.207 2.939 1.716 H8 A1JJX 77 A1JJX H9 H9 H 0 1 N N N N N N -30.205 92.603 -23.666 13.157 2.106 0.463 H9 A1JJX 78 A1JJX H10 H10 H 0 1 N N N N N N -31.174 94.114 -23.584 11.768 3.117 0.001 H10 A1JJX 79 A1JJX H11 H11 H 0 1 N N N N N N -34.394 87.945 -28.076 4.992 3.301 1.427 H11 A1JJX 80 A1JJX H12 H12 H 0 1 N N N N N N -34.215 87.497 -32.863 0.354 4.895 1.248 H12 A1JJX 81 A1JJX H13 H13 H 0 1 N N N N N N -34.443 104.635 -29.270 21.854 -4.554 -1.920 H13 A1JJX 82 A1JJX H14 H14 H 0 1 N N N N N N -31.514 104.470 -32.519 22.564 -3.092 -3.259 H14 A1JJX 83 A1JJX H15 H15 H 0 1 N N N N N N -31.637 102.710 -32.181 21.949 -4.589 -4.000 H15 A1JJX 84 A1JJX H16 H16 H 0 1 N N N N N N -33.114 103.656 -32.570 22.132 -3.118 -4.986 H16 A1JJX 85 A1JJX H17 H17 H 0 1 N N N N N N -31.540 89.179 -27.226 6.954 1.701 1.281 H17 A1JJX 86 A1JJX H18 H18 H 0 1 N N N N N N -31.248 89.427 -28.981 7.527 3.381 1.408 H18 A1JJX 87 A1JJX H19 H19 H 0 1 N N N N N N -33.504 90.417 -29.192 6.014 2.190 -0.960 H19 A1JJX 88 A1JJX H20 H20 H 0 1 N N N N N N -33.791 90.089 -27.449 6.586 3.871 -0.833 H20 A1JJX 89 A1JJX H21 H21 H 0 1 N N N N N N -34.745 86.221 -29.321 2.317 3.294 1.102 H21 A1JJX 90 A1JJX H22 H22 H 0 1 N N N N N N -33.067 85.633 -29.578 2.889 4.975 1.229 H22 A1JJX 91 A1JJX H23 H23 H 0 1 N N N N N N -34.910 85.152 -31.367 1.376 3.784 -1.140 H23 A1JJX 92 A1JJX H24 H24 H 0 1 N N N N N N -33.263 85.650 -31.883 1.949 5.465 -1.013 H24 A1JJX 93 A1JJX H25 H25 H 0 1 N N N N N N -37.381 88.417 -33.247 -2.349 6.653 0.124 H25 A1JJX 94 A1JJX H26 H26 H 0 1 N N N N N N -35.850 88.817 -34.648 -1.462 4.647 2.026 H26 A1JJX 95 A1JJX H27 H27 H 0 1 N N N N N N -37.354 88.988 -30.216 -2.549 4.595 -2.184 H27 A1JJX 96 A1JJX H28 H28 H 0 1 N N N N N N -37.859 90.711 -30.283 -4.259 4.240 -1.836 H28 A1JJX 97 A1JJX H29 H29 H 0 1 N N N N N N -38.687 89.492 -31.310 -3.654 5.910 -1.717 H29 A1JJX 98 A1JJX H30 H30 H 0 1 N N N N N N -34.996 89.885 -30.677 -2.262 3.049 1.137 H30 A1JJX 99 A1JJX H31 H31 H 0 1 N N N N N N -34.704 90.843 -32.169 -3.263 2.490 -0.224 H31 A1JJX 100 A1JJX H32 H32 H 0 1 N N N N N N -35.669 91.544 -30.826 -1.613 3.090 -0.520 H32 A1JJX 101 A1JJX H33 H33 H 0 1 N N N N N N -36.474 91.304 -33.747 -4.068 4.638 1.812 H33 A1JJX 102 A1JJX H34 H34 H 0 1 N N N N N N -37.288 92.107 -32.362 -4.706 5.812 0.636 H34 A1JJX 103 A1JJX H35 H35 H 0 1 N N N N N N -40.941 91.125 -35.160 -6.166 2.429 2.681 H35 A1JJX 104 A1JJX H36 H36 H 0 1 N N N N N N -38.845 87.395 -35.493 -9.523 3.367 -1.804 H36 A1JJX 105 A1JJX H37 H37 H 0 1 N N N N N N -36.314 89.602 -38.880 -11.243 0.286 0.499 H37 A1JJX 106 A1JJX H38 H38 H 0 1 N N N N N N -37.038 91.003 -38.019 -11.380 0.879 -1.174 H38 A1JJX 107 A1JJX H39 H39 H 0 1 N N N N N N -38.609 91.391 -39.746 -10.082 -1.144 -1.937 H39 A1JJX 108 A1JJX H40 H40 H 0 1 N N N N N N -37.542 91.414 -42.677 -10.144 -3.819 -0.966 H40 A1JJX 109 A1JJX H41 H41 H 0 1 N N N N N N -34.189 90.269 -41.072 -9.881 -2.435 2.542 H41 A1JJX 110 A1JJX H42 H42 H 0 1 N N N N N N -31.764 93.029 -45.992 -9.627 -6.574 5.022 H42 A1JJX 111 A1JJX H43 H43 H 0 1 N N N N N N -31.550 92.989 -44.374 -9.840 -8.205 4.683 H43 A1JJX 112 A1JJX H44 H44 H 0 1 N N N N N N -36.037 93.152 -46.485 -10.894 -8.445 0.252 H44 A1JJX 113 A1JJX H45 H45 H 0 1 N N N N N N -36.567 88.744 -41.571 -12.550 -2.780 0.634 H45 A1JJX 114 A1JJX H46 H46 H 0 1 N N N N N N -38.073 88.134 -43.253 -12.658 -4.924 -0.486 H46 A1JJX 115 A1JJX H47 H47 H 0 1 N N N N N N -38.611 88.666 -40.378 -12.815 -1.035 -0.922 H47 A1JJX 116 A1JJX H48 H48 H 0 1 N N N N N N -41.322 87.430 -40.767 -12.438 0.292 -4.134 H48 A1JJX 117 A1JJX H49 H49 H 0 1 N N N N N N -42.738 90.626 -41.673 -14.086 -2.000 -5.549 H49 A1JJX 118 A1JJX H50 H50 H 0 1 N N N N N N -28.870 96.762 -26.050 14.473 1.172 2.398 H50 A1JJX 119 A1JJX H51 H51 H 0 1 N N N N N N -29.688 98.913 -26.901 16.616 0.289 1.572 H51 A1JJX 120 A1JJX H52 H52 H 0 1 N N N N N N -31.861 101.392 -30.308 18.147 -2.593 -2.740 H52 A1JJX 121 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JJX N6 C32 SING Y N 1 A1JJX N6 C31 DOUB Y N 2 A1JJX C32 N7 DOUB Y N 3 A1JJX N5 C31 SING N N 4 A1JJX C31 C30 SING Y N 5 A1JJX N7 C33 SING Y N 6 A1JJX C30 C33 DOUB Y N 7 A1JJX C30 N4 SING Y N 8 A1JJX C33 N3 SING Y N 9 A1JJX O15 C34 SING N N 10 A1JJX N4 C29 DOUB Y N 11 A1JJX O19 P3 DOUB N N 12 A1JJX N3 C28 SING N N 13 A1JJX N3 C29 SING Y N 14 A1JJX C28 C34 SING N N 15 A1JJX C28 O14 SING N N 16 A1JJX C34 C35 SING N N 17 A1JJX O16 P3 SING N N 18 A1JJX O16 C35 SING N N 19 A1JJX P3 O18 SING N N 20 A1JJX P3 O17 SING N N 21 A1JJX C35 C27 SING N N 22 A1JJX O14 C27 SING N N 23 A1JJX C27 C26 SING N N 24 A1JJX C26 O13 SING N N 25 A1JJX O13 P2 SING N N 26 A1JJX P2 O11 DOUB N N 27 A1JJX P2 O10 SING N N 28 A1JJX P2 O12 SING N N 29 A1JJX O10 P1 SING N N 30 A1JJX O8 P1 DOUB N N 31 A1JJX O9 P1 SING N N 32 A1JJX P1 O7 SING N N 33 A1JJX O6 C21 SING N N 34 A1JJX O7 C25 SING N N 35 A1JJX C25 C22 SING N N 36 A1JJX C21 C22 SING N N 37 A1JJX C21 C20 SING N N 38 A1JJX N2 C20 SING N N 39 A1JJX N2 C19 SING N N 40 A1JJX C1 O1 SING N N 41 A1JJX C22 C24 SING N N 42 A1JJX C22 C23 SING N N 43 A1JJX C20 O5 DOUB N N 44 A1JJX C19 C18 SING N N 45 A1JJX O1 C2 SING N N 46 A1JJX O4 C17 DOUB N N 47 A1JJX C18 C17 SING N N 48 A1JJX C2 C38 DOUB Y N 49 A1JJX C2 C3 SING Y N 50 A1JJX C38 C6 SING Y N 51 A1JJX C17 N1 SING N N 52 A1JJX C3 C4 DOUB Y N 53 A1JJX C6 C7 SING N N 54 A1JJX C6 C5 DOUB Y N 55 A1JJX C7 O2 SING N N 56 A1JJX N1 C16 SING N N 57 A1JJX C4 C5 SING Y N 58 A1JJX O2 C8 SING N N 59 A1JJX C16 C15 SING N N 60 A1JJX C9 C8 DOUB Y N 61 A1JJX C9 C10 SING Y N 62 A1JJX C15 S2 SING N N 63 A1JJX C8 C37 SING Y N 64 A1JJX S2 C14 SING N N 65 A1JJX C10 C11 DOUB Y N 66 A1JJX C37 C36 DOUB Y N 67 A1JJX C11 C36 SING Y N 68 A1JJX C11 S1 SING N N 69 A1JJX S1 C12 SING N N 70 A1JJX C14 C12 SING N N 71 A1JJX C14 O3 DOUB N N 72 A1JJX C12 C13 SING N N 73 A1JJX C4 H1 SING N N 74 A1JJX C5 H2 SING N N 75 A1JJX C7 H3 SING N N 76 A1JJX C7 H4 SING N N 77 A1JJX C9 H5 SING N N 78 A1JJX C10 H6 SING N N 79 A1JJX C12 H7 SING N N 80 A1JJX C13 H8 SING N N 81 A1JJX C13 H9 SING N N 82 A1JJX C13 H10 SING N N 83 A1JJX N1 H11 SING N N 84 A1JJX N2 H12 SING N N 85 A1JJX C3 H13 SING N N 86 A1JJX C1 H14 SING N N 87 A1JJX C1 H15 SING N N 88 A1JJX C1 H16 SING N N 89 A1JJX C15 H17 SING N N 90 A1JJX C15 H18 SING N N 91 A1JJX C16 H19 SING N N 92 A1JJX C16 H20 SING N N 93 A1JJX C18 H21 SING N N 94 A1JJX C18 H22 SING N N 95 A1JJX C19 H23 SING N N 96 A1JJX C19 H24 SING N N 97 A1JJX C21 H25 SING N N 98 A1JJX O6 H26 SING N N 99 A1JJX C23 H27 SING N N 100 A1JJX C23 H28 SING N N 101 A1JJX C23 H29 SING N N 102 A1JJX C24 H30 SING N N 103 A1JJX C24 H31 SING N N 104 A1JJX C24 H32 SING N N 105 A1JJX C25 H33 SING N N 106 A1JJX C25 H34 SING N N 107 A1JJX O9 H35 SING N N 108 A1JJX O12 H36 SING N N 109 A1JJX C26 H37 SING N N 110 A1JJX C26 H38 SING N N 111 A1JJX C27 H39 SING N N 112 A1JJX C28 H40 SING N N 113 A1JJX C29 H41 SING N N 114 A1JJX N5 H42 SING N N 115 A1JJX N5 H43 SING N N 116 A1JJX C32 H44 SING N N 117 A1JJX C34 H45 SING N N 118 A1JJX O15 H46 SING N N 119 A1JJX C35 H47 SING N N 120 A1JJX O17 H48 SING N N 121 A1JJX O18 H49 SING N N 122 A1JJX C36 H50 SING N N 123 A1JJX C37 H51 SING N N 124 A1JJX C38 H52 SING N N 125 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JJX InChI InChI 1.06 "InChI=1S/C38H52N7O19P3S2/c1-22(69-26-10-8-24(9-11-26)59-17-23-6-5-7-25(16-23)58-4)37(50)68-15-14-40-28(46)12-13-41-35(49)32(48)38(2,3)19-61-67(56,57)64-66(54,55)60-18-27-31(63-65(51,52)53)30(47)36(62-27)45-21-44-29-33(39)42-20-43-34(29)45/h5-11,16,20-22,27,30-32,36,47-48H,12-15,17-19H2,1-4H3,(H,40,46)(H,41,49)(H,54,55)(H,56,57)(H2,39,42,43)(H2,51,52,53)/t22-,27-,30-,31-,32+,36-/m1/s1" A1JJX InChIKey InChI 1.06 LSVHIKVGQUEGEB-IRGRYGCCSA-N A1JJX SMILES_CANONICAL CACTVS 3.385 "COc1cccc(COc2ccc(S[C@H](C)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O[P](O)(O)=O)n4cnc5c(N)ncnc45)cc2)c1" A1JJX SMILES CACTVS 3.385 "COc1cccc(COc2ccc(S[CH](C)C(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O[P](O)(O)=O)n4cnc5c(N)ncnc45)cc2)c1" A1JJX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)Sc4ccc(cc4)OCc5cccc(c5)OC" A1JJX SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)Sc4ccc(cc4)OCc5cccc(c5)OC" # _pdbx_chem_comp_identifier.comp_id A1JJX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-[4-[(3-methoxyphenyl)methoxy]phenyl]sulfanylpropanethioate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JJX "Create component" 2025-07-16 PDBE A1JJX "Initial release" 2026-07-29 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1JJX _pdbx_chem_comp_synonyms.name "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-[4-[(3-methoxyphenyl)methoxy]phenyl]sulfanylpropanethioate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #