data_A1JJY # _chem_comp.id A1JJY _chem_comp.name "2-(4-(2-Phenylethoxy)phenylthiol)propanoyl-CoA" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C38 H52 N7 O18 P3 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-[4-(2-phenylethoxy)phenyl]sulfanylpropanethioate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-07-16 _chem_comp.pdbx_modified_date 2026-07-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1051.907 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JJY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RZ1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JJY C4 C1 C 0 1 Y N N N N N -30.039 95.910 -28.263 -13.542 2.175 1.868 C4 A1JJY 1 A1JJY C14 C2 C 0 1 Y N N N N N -35.086 102.251 -28.866 -8.277 7.110 -1.422 C14 A1JJY 2 A1JJY C5 C3 C 0 1 Y N N N N N -30.446 97.115 -28.808 -12.751 3.294 2.041 C5 A1JJY 3 A1JJY C6 C4 C 0 1 Y N N N N N -31.141 98.041 -28.036 -11.719 3.558 1.153 C6 A1JJY 4 A1JJY C11 C5 C 0 1 Y N N N N N -35.987 100.241 -30.544 -5.766 6.042 -0.978 C11 A1JJY 5 A1JJY C7 C6 C 0 1 N N N N N N -32.369 100.139 -27.896 -9.896 4.871 0.372 C7 A1JJY 6 A1JJY C8 C7 C 0 1 N N N N N N -32.754 101.277 -28.811 -9.134 6.150 0.725 C8 A1JJY 7 A1JJY C9 C8 C 0 1 Y N N N N N -34.194 101.256 -29.270 -8.032 6.372 -0.279 C9 A1JJY 8 A1JJY C10 C9 C 0 1 Y N N N N N -34.664 100.250 -30.118 -6.777 5.838 -0.057 C10 A1JJY 9 A1JJY C12 C10 C 0 1 Y N N N N N -36.853 101.237 -30.137 -6.013 6.776 -2.123 C12 A1JJY 10 A1JJY C13 C11 C 0 1 Y N N N N N -36.407 102.240 -29.299 -7.268 7.309 -2.345 C13 A1JJY 11 A1JJY N1 N1 N 0 1 N N N N N N -33.783 88.546 -28.579 -7.346 -3.223 -0.526 N1 A1JJY 12 A1JJY N2 N2 N 0 1 N N N N N N -34.741 87.169 -32.065 -2.758 -4.929 -0.184 N2 A1JJY 13 A1JJY C3 C12 C 0 1 Y N N N N N -30.310 95.601 -26.929 -13.303 1.314 0.804 C3 A1JJY 14 A1JJY N3 N3 N 0 1 Y N N N N N -35.500 91.172 -42.548 8.578 3.516 0.621 N3 A1JJY 15 A1JJY C1 C13 C 0 1 N N N N N N -31.193 93.147 -23.921 -14.427 -2.096 -1.299 C1 A1JJY 16 A1JJY C2 C14 C 0 1 N N R N N N -31.236 93.172 -25.427 -13.531 -0.949 -0.827 C2 A1JJY 17 A1JJY S1 S1 S 0 1 N N N N N N -29.810 94.056 -26.187 -14.307 -0.117 0.586 S1 A1JJY 18 A1JJY O1 O1 O 0 1 N N N N N N -31.525 99.226 -28.624 -10.941 4.661 1.324 O1 A1JJY 19 A1JJY C15 C15 C 0 1 Y N N N N N -31.404 97.749 -26.710 -11.480 2.699 0.090 C15 A1JJY 20 A1JJY C16 C16 C 0 1 Y N N N N N -30.998 96.544 -26.167 -12.272 1.583 -0.088 C16 A1JJY 21 A1JJY C17 C17 C 0 1 N N N N N N -31.418 91.758 -25.948 -12.190 -1.497 -0.412 C17 A1JJY 22 A1JJY O2 O2 O 0 1 N N N N N N -31.821 90.818 -25.252 -11.976 -1.759 0.754 O2 A1JJY 23 A1JJY S2 S2 S 0 1 N N N N N N -31.087 91.602 -27.681 -10.969 -1.751 -1.584 S2 A1JJY 24 A1JJY C18 C18 C 0 1 N N N N N N -31.787 89.945 -28.014 -9.647 -2.394 -0.527 C18 A1JJY 25 A1JJY C19 C19 C 0 1 N N N N N N -33.296 89.895 -28.242 -8.416 -2.702 -1.381 C19 A1JJY 26 A1JJY C20 C20 C 0 1 N N N N N N -33.404 87.899 -29.685 -6.159 -3.565 -1.065 C20 A1JJY 27 A1JJY O3 O3 O 0 1 N N N N N N -32.639 88.410 -30.526 -5.976 -3.441 -2.257 O3 A1JJY 28 A1JJY C21 C21 C 0 1 N N N N N N -33.927 86.493 -29.824 -5.059 -4.100 -0.185 C21 A1JJY 29 A1JJY C22 C22 C 0 1 N N N N N N -34.150 86.098 -31.272 -3.827 -4.408 -1.039 C22 A1JJY 30 A1JJY C23 C23 C 0 1 N N N N N N -35.960 87.664 -31.834 -1.571 -5.271 -0.722 C23 A1JJY 31 A1JJY O4 O4 O 0 1 N N N N N N -36.721 87.256 -30.931 -1.418 -5.238 -1.925 O4 A1JJY 32 A1JJY C24 C24 C 0 1 N N R N N N -36.376 88.811 -32.752 -0.432 -5.694 0.170 C24 A1JJY 33 A1JJY O5 O5 O 0 1 N N N N N N -35.349 89.121 -33.703 -0.903 -5.823 1.513 O5 A1JJY 34 A1JJY C25 C25 C 0 1 N N N N N N -36.708 90.122 -31.970 0.677 -4.641 0.116 C25 A1JJY 35 A1JJY C26 C26 C 0 1 N N N N N N -37.819 89.868 -30.943 1.199 -4.524 -1.317 C26 A1JJY 36 A1JJY C27 C27 C 0 1 N N N N N N -35.475 90.702 -31.266 0.119 -3.290 0.569 C27 A1JJY 37 A1JJY C28 C28 C 0 1 N N N N N N -37.125 91.220 -32.960 1.820 -5.057 1.044 C28 A1JJY 38 A1JJY O6 O6 O 0 1 N N N N N N -38.422 90.858 -33.492 2.856 -4.074 0.994 O6 A1JJY 39 A1JJY P1 P1 P 0 1 N N N N N N -38.918 91.318 -34.939 4.216 -4.189 1.847 P1 A1JJY 40 A1JJY O7 O7 O 0 1 N N N N N N -38.593 92.758 -35.063 4.874 -5.482 1.556 O7 A1JJY 41 A1JJY O8 O8 O 0 1 N N N N N N -40.207 90.562 -34.921 3.872 -4.104 3.418 O8 A1JJY 42 A1JJY O9 O9 O 0 1 N N N N N N -37.995 90.602 -36.011 5.204 -2.982 1.448 O9 A1JJY 43 A1JJY P2 P2 P 0 1 N N N N N N -38.073 89.048 -36.425 6.789 -2.739 1.594 P2 A1JJY 44 A1JJY O10 O10 O 0 1 N N N N N N -39.234 88.204 -36.018 7.515 -3.960 1.180 O10 A1JJY 45 A1JJY O11 O11 O 0 1 N N N N N N -36.782 88.441 -36.000 7.141 -2.399 3.128 O11 A1JJY 46 A1JJY O12 O12 O 0 1 N N N N N N -38.035 89.294 -38.004 7.231 -1.507 0.656 O12 A1JJY 47 A1JJY C29 C29 C 0 1 N N N N N N -37.191 90.344 -38.513 8.593 -1.110 0.485 C29 A1JJY 48 A1JJY C30 C30 C 0 1 N N R N N N -37.766 90.844 -39.815 8.659 0.087 -0.465 C30 A1JJY 49 A1JJY O13 O13 O 0 1 N N N N N N -36.695 91.431 -40.583 8.044 1.233 0.148 O13 A1JJY 50 A1JJY C31 C31 C 0 1 N N R N N N -36.809 90.990 -41.936 8.775 2.394 -0.301 C31 A1JJY 51 A1JJY C32 C32 C 0 1 Y N N N N N -34.284 90.935 -41.963 8.141 3.434 1.910 C32 A1JJY 52 A1JJY N4 N4 N 0 1 Y N N N N N -33.270 91.311 -42.699 8.082 4.622 2.436 N4 A1JJY 53 A1JJY C33 C33 C 0 1 Y N N N N N -33.860 91.875 -43.817 8.476 5.540 1.521 C33 A1JJY 54 A1JJY C34 C34 C 0 1 Y N N N N N -33.310 92.477 -44.957 8.617 6.939 1.521 C34 A1JJY 55 A1JJY N5 N5 N 0 1 N N N N N N -31.999 92.643 -45.138 8.309 7.681 2.648 N5 A1JJY 56 A1JJY N6 N6 N 0 1 Y N N N N N -34.180 92.986 -45.867 9.054 7.531 0.415 N6 A1JJY 57 A1JJY C35 C35 C 0 1 Y N N N N N -35.493 92.834 -45.659 9.350 6.831 -0.665 C35 A1JJY 58 A1JJY N7 N7 N 0 1 Y N N N N N -36.121 92.267 -44.636 9.233 5.521 -0.711 N7 A1JJY 59 A1JJY C36 C36 C 0 1 Y N N N N N -35.238 91.808 -43.734 8.805 4.841 0.347 C36 A1JJY 60 A1JJY C37 C37 C 0 1 N N R N N N -37.387 89.591 -41.842 10.252 1.923 -0.279 C37 A1JJY 61 A1JJY O14 O14 O 0 1 N N N N N N -37.868 89.325 -43.135 11.043 2.685 -1.193 O14 A1JJY 62 A1JJY C38 C38 C 0 1 N N S N N N -38.432 89.803 -40.736 10.130 0.450 -0.750 C38 A1JJY 63 A1JJY O15 O15 O 0 1 N N N N N N -39.668 90.348 -41.200 10.413 0.346 -2.147 O15 A1JJY 64 A1JJY P3 P3 P 0 1 N N N N N N -41.080 89.569 -41.307 11.590 -0.581 -2.736 P3 A1JJY 65 A1JJY O16 O16 O 0 1 N N N N N N -42.144 90.500 -40.748 11.707 -0.355 -4.325 O16 A1JJY 66 A1JJY O17 O17 O 0 1 N N N N N N -41.201 89.280 -42.794 12.872 -0.221 -2.090 O17 A1JJY 67 A1JJY O18 O18 O 0 1 N N N N N N -41.042 88.262 -40.562 11.255 -2.128 -2.437 O18 A1JJY 68 A1JJY H1 H1 H 0 1 N N N N N N -29.505 95.200 -28.877 -14.342 1.967 2.562 H1 A1JJY 69 A1JJY H2 H2 H 0 1 N N N N N N -34.746 103.038 -28.210 -9.258 7.527 -1.595 H2 A1JJY 70 A1JJY H3 H3 H 0 1 N N N N N N -30.223 97.339 -29.841 -12.936 3.964 2.868 H3 A1JJY 71 A1JJY H4 H4 H 0 1 N N N N N N -36.338 99.454 -31.194 -4.785 5.625 -0.804 H4 A1JJY 72 A1JJY H5 H5 H 0 1 N N N N N N -31.824 100.532 -27.025 -10.327 4.969 -0.625 H5 A1JJY 73 A1JJY H6 H6 H 0 1 N N N N N N -33.274 99.615 -27.556 -9.211 4.023 0.390 H6 A1JJY 74 A1JJY H7 H7 H 0 1 N N N N N N -32.109 101.234 -29.701 -9.819 6.998 0.707 H7 A1JJY 75 A1JJY H8 H8 H 0 1 N N N N N N -32.578 102.222 -28.276 -8.703 6.052 1.722 H8 A1JJY 76 A1JJY H9 H9 H 0 1 N N N N N N -33.992 99.471 -30.446 -6.585 5.261 0.836 H9 A1JJY 77 A1JJY H10 H10 H 0 1 N N N N N N -37.879 101.231 -30.474 -5.223 6.935 -2.843 H10 A1JJY 78 A1JJY H11 H11 H 0 1 N N N N N N -37.086 103.017 -28.980 -7.461 7.883 -3.240 H11 A1JJY 79 A1JJY H12 H12 H 0 1 N N N N N N -34.423 88.097 -27.955 -7.493 -3.322 0.428 H12 A1JJY 80 A1JJY H13 H13 H 0 1 N N N N N N -34.208 87.552 -32.819 -2.904 -5.028 0.770 H13 A1JJY 81 A1JJY H14 H14 H 0 1 N N N N N N -32.071 92.606 -23.538 -14.632 -2.764 -0.463 H14 A1JJY 82 A1JJY H15 H15 H 0 1 N N N N N N -30.275 92.639 -23.589 -15.365 -1.691 -1.679 H15 A1JJY 83 A1JJY H16 H16 H 0 1 N N N N N N -31.201 94.178 -23.537 -13.922 -2.649 -2.091 H16 A1JJY 84 A1JJY H17 H17 H 0 1 N N N N N N -32.117 93.757 -25.730 -13.396 -0.235 -1.639 H17 A1JJY 85 A1JJY H18 H18 H 0 1 N N N N N N -31.929 98.466 -26.096 -10.676 2.906 -0.601 H18 A1JJY 86 A1JJY H19 H19 H 0 1 N N N N N N -31.218 96.329 -25.132 -12.086 0.914 -0.915 H19 A1JJY 87 A1JJY H20 H20 H 0 1 N N N N N N -31.554 89.301 -27.153 -9.390 -1.650 0.226 H20 A1JJY 88 A1JJY H21 H21 H 0 1 N N N N N N -31.296 89.546 -28.914 -9.986 -3.307 -0.037 H21 A1JJY 89 A1JJY H22 H22 H 0 1 N N N N N N -33.548 90.575 -29.069 -8.077 -1.790 -1.872 H22 A1JJY 90 A1JJY H23 H23 H 0 1 N N N N N N -33.801 90.231 -27.324 -8.673 -3.446 -2.135 H23 A1JJY 91 A1JJY H24 H24 H 0 1 N N N N N N -34.884 86.417 -29.286 -4.802 -3.356 0.569 H24 A1JJY 92 A1JJY H25 H25 H 0 1 N N N N N N -33.199 85.800 -29.377 -5.398 -5.013 0.306 H25 A1JJY 93 A1JJY H26 H26 H 0 1 N N N N N N -34.823 85.228 -31.299 -3.488 -3.496 -1.530 H26 A1JJY 94 A1JJY H27 H27 H 0 1 N N N N N N -33.181 85.826 -31.715 -4.084 -5.152 -1.793 H27 A1JJY 95 A1JJY H28 H28 H 0 1 N N N N N N -37.286 88.504 -33.289 -0.040 -6.652 -0.171 H28 A1JJY 96 A1JJY H29 H29 H 0 1 N N N N N N -35.126 88.340 -34.195 -1.266 -5.006 1.883 H29 A1JJY 97 A1JJY H30 H30 H 0 1 N N N N N N -37.501 89.080 -30.245 0.423 -4.097 -1.953 H30 A1JJY 98 A1JJY H31 H31 H 0 1 N N N N N N -38.020 90.794 -30.384 2.077 -3.877 -1.332 H31 A1JJY 99 A1JJY H32 H32 H 0 1 N N N N N N -38.734 89.549 -31.464 1.470 -5.512 -1.687 H32 A1JJY 100 A1JJY H33 H33 H 0 1 N N N N N N -35.099 89.978 -30.528 -0.253 -3.374 1.590 H33 A1JJY 101 A1JJY H34 H34 H 0 1 N N N N N N -34.691 90.908 -32.010 0.909 -2.540 0.530 H34 A1JJY 102 A1JJY H35 H35 H 0 1 N N N N N N -35.750 91.637 -30.755 -0.695 -2.994 -0.092 H35 A1JJY 103 A1JJY H36 H36 H 0 1 N N N N N N -36.390 91.288 -33.776 1.448 -5.141 2.065 H36 A1JJY 104 A1JJY H37 H37 H 0 1 N N N N N N -37.189 92.188 -32.442 2.217 -6.020 0.721 H37 A1JJY 105 A1JJY H38 H38 H 0 1 N N N N N N -40.932 91.169 -35.010 3.438 -3.281 3.682 H38 A1JJY 106 A1JJY H39 H39 H 0 1 N N N N N N -36.950 87.623 -35.546 6.698 -1.609 3.467 H39 A1JJY 107 A1JJY H40 H40 H 0 1 N N N N N N -36.177 89.953 -38.683 9.014 -0.831 1.451 H40 A1JJY 108 A1JJY H41 H41 H 0 1 N N N N N N -37.149 91.169 -37.787 9.163 -1.939 0.065 H41 A1JJY 109 A1JJY H42 H42 H 0 1 N N N N N N -38.513 91.619 -39.587 8.149 -0.152 -1.399 H42 A1JJY 110 A1JJY H43 H43 H 0 1 N N N N N N -37.537 91.624 -42.463 8.476 2.674 -1.311 H43 A1JJY 111 A1JJY H44 H44 H 0 1 N N N N N N -34.173 90.482 -40.989 7.881 2.517 2.419 H44 A1JJY 112 A1JJY H45 H45 H 0 1 N N N N N N -31.841 93.157 -45.981 7.992 7.237 3.450 H45 A1JJY 113 A1JJY H46 H46 H 0 1 N N N N N N -31.617 93.148 -44.364 8.411 8.646 2.636 H46 A1JJY 114 A1JJY H47 H47 H 0 1 N N N N N N -36.133 93.229 -46.434 9.702 7.353 -1.543 H47 A1JJY 115 A1JJY H48 H48 H 0 1 N N N N N N -36.621 88.871 -41.518 10.663 1.978 0.729 H48 A1JJY 116 A1JJY H49 H49 H 0 1 N N N N N N -38.250 88.456 -43.158 11.076 3.630 -0.992 H49 A1JJY 117 A1JJY H50 H50 H 0 1 N N N N N N -38.588 88.864 -40.185 10.798 -0.191 -0.175 H50 A1JJY 118 A1JJY H51 H51 H 0 1 N N N N N N -42.735 90.761 -41.445 12.398 -0.883 -4.748 H51 A1JJY 119 A1JJY H52 H52 H 0 1 N N N N N N -41.102 87.543 -41.180 10.427 -2.434 -2.831 H52 A1JJY 120 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JJY N6 C35 SING Y N 1 A1JJY N6 C34 DOUB Y N 2 A1JJY C35 N7 DOUB Y N 3 A1JJY N5 C34 SING N N 4 A1JJY C34 C33 SING Y N 5 A1JJY N7 C36 SING Y N 6 A1JJY C33 C36 DOUB Y N 7 A1JJY C33 N4 SING Y N 8 A1JJY C36 N3 SING Y N 9 A1JJY O14 C37 SING N N 10 A1JJY O17 P3 DOUB N N 11 A1JJY N4 C32 DOUB Y N 12 A1JJY N3 C32 SING Y N 13 A1JJY N3 C31 SING N N 14 A1JJY C31 C37 SING N N 15 A1JJY C31 O13 SING N N 16 A1JJY C37 C38 SING N N 17 A1JJY P3 O15 SING N N 18 A1JJY P3 O16 SING N N 19 A1JJY P3 O18 SING N N 20 A1JJY O15 C38 SING N N 21 A1JJY C38 C30 SING N N 22 A1JJY O13 C30 SING N N 23 A1JJY C30 C29 SING N N 24 A1JJY C29 O12 SING N N 25 A1JJY O12 P2 SING N N 26 A1JJY P2 O10 DOUB N N 27 A1JJY P2 O9 SING N N 28 A1JJY P2 O11 SING N N 29 A1JJY O9 P1 SING N N 30 A1JJY O7 P1 DOUB N N 31 A1JJY P1 O8 SING N N 32 A1JJY P1 O6 SING N N 33 A1JJY O5 C24 SING N N 34 A1JJY O6 C28 SING N N 35 A1JJY C28 C25 SING N N 36 A1JJY C24 C25 SING N N 37 A1JJY C24 C23 SING N N 38 A1JJY N2 C23 SING N N 39 A1JJY N2 C22 SING N N 40 A1JJY C25 C27 SING N N 41 A1JJY C25 C26 SING N N 42 A1JJY C23 O4 DOUB N N 43 A1JJY C22 C21 SING N N 44 A1JJY C11 C12 DOUB Y N 45 A1JJY C11 C10 SING Y N 46 A1JJY O3 C20 DOUB N N 47 A1JJY C12 C13 SING Y N 48 A1JJY C10 C9 DOUB Y N 49 A1JJY C21 C20 SING N N 50 A1JJY C20 N1 SING N N 51 A1JJY C13 C14 DOUB Y N 52 A1JJY C9 C14 SING Y N 53 A1JJY C9 C8 SING N N 54 A1JJY C8 C7 SING N N 55 A1JJY C5 C4 DOUB Y N 56 A1JJY C5 C6 SING Y N 57 A1JJY O1 C6 SING N N 58 A1JJY O1 C7 SING N N 59 A1JJY N1 C19 SING N N 60 A1JJY C4 C3 SING Y N 61 A1JJY C19 C18 SING N N 62 A1JJY C6 C15 DOUB Y N 63 A1JJY C18 S2 SING N N 64 A1JJY S2 C17 SING N N 65 A1JJY C3 S1 SING N N 66 A1JJY C3 C16 DOUB Y N 67 A1JJY C15 C16 SING Y N 68 A1JJY S1 C2 SING N N 69 A1JJY C17 C2 SING N N 70 A1JJY C17 O2 DOUB N N 71 A1JJY C2 C1 SING N N 72 A1JJY C4 H1 SING N N 73 A1JJY C14 H2 SING N N 74 A1JJY C5 H3 SING N N 75 A1JJY C11 H4 SING N N 76 A1JJY C7 H5 SING N N 77 A1JJY C7 H6 SING N N 78 A1JJY C8 H7 SING N N 79 A1JJY C8 H8 SING N N 80 A1JJY C10 H9 SING N N 81 A1JJY C12 H10 SING N N 82 A1JJY C13 H11 SING N N 83 A1JJY N1 H12 SING N N 84 A1JJY N2 H13 SING N N 85 A1JJY C1 H14 SING N N 86 A1JJY C1 H15 SING N N 87 A1JJY C1 H16 SING N N 88 A1JJY C2 H17 SING N N 89 A1JJY C15 H18 SING N N 90 A1JJY C16 H19 SING N N 91 A1JJY C18 H20 SING N N 92 A1JJY C18 H21 SING N N 93 A1JJY C19 H22 SING N N 94 A1JJY C19 H23 SING N N 95 A1JJY C21 H24 SING N N 96 A1JJY C21 H25 SING N N 97 A1JJY C22 H26 SING N N 98 A1JJY C22 H27 SING N N 99 A1JJY C24 H28 SING N N 100 A1JJY O5 H29 SING N N 101 A1JJY C26 H30 SING N N 102 A1JJY C26 H31 SING N N 103 A1JJY C26 H32 SING N N 104 A1JJY C27 H33 SING N N 105 A1JJY C27 H34 SING N N 106 A1JJY C27 H35 SING N N 107 A1JJY C28 H36 SING N N 108 A1JJY C28 H37 SING N N 109 A1JJY O8 H38 SING N N 110 A1JJY O11 H39 SING N N 111 A1JJY C29 H40 SING N N 112 A1JJY C29 H41 SING N N 113 A1JJY C30 H42 SING N N 114 A1JJY C31 H43 SING N N 115 A1JJY C32 H44 SING N N 116 A1JJY N5 H45 SING N N 117 A1JJY N5 H46 SING N N 118 A1JJY C35 H47 SING N N 119 A1JJY C37 H48 SING N N 120 A1JJY O14 H49 SING N N 121 A1JJY C38 H50 SING N N 122 A1JJY O16 H51 SING N N 123 A1JJY O18 H52 SING N N 124 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JJY InChI InChI 1.06 "InChI=1S/C38H52N7O18P3S2/c1-23(68-26-11-9-25(10-12-26)58-17-14-24-7-5-4-6-8-24)37(50)67-18-16-40-28(46)13-15-41-35(49)32(48)38(2,3)20-60-66(56,57)63-65(54,55)59-19-27-31(62-64(51,52)53)30(47)36(61-27)45-22-44-29-33(39)42-21-43-34(29)45/h4-12,21-23,27,30-32,36,47-48H,13-20H2,1-3H3,(H,40,46)(H,41,49)(H,54,55)(H,56,57)(H2,39,42,43)(H2,51,52,53)/t23-,27-,30-,31-,32+,36-/m1/s1" A1JJY InChIKey InChI 1.06 RYPJCXSQNCGCEY-JUIOOPGCSA-N A1JJY SMILES_CANONICAL CACTVS 3.385 "C[C@@H](Sc1ccc(OCCc2ccccc2)cc1)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O[P](O)(O)=O)n4cnc5c(N)ncnc45" A1JJY SMILES CACTVS 3.385 "C[CH](Sc1ccc(OCCc2ccccc2)cc1)C(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O[P](O)(O)=O)n4cnc5c(N)ncnc45" A1JJY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)Sc4ccc(cc4)OCCc5ccccc5" A1JJY SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)Sc4ccc(cc4)OCCc5ccccc5" # _pdbx_chem_comp_identifier.comp_id A1JJY _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-[4-(2-phenylethoxy)phenyl]sulfanylpropanethioate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JJY "Create component" 2025-07-16 PDBE A1JJY "Initial release" 2026-07-29 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1JJY _pdbx_chem_comp_synonyms.name "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-[4-(2-phenylethoxy)phenyl]sulfanylpropanethioate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #