data_A1JJZ # _chem_comp.id A1JJZ _chem_comp.name "2-(4-(2-(3-Trifluoromethylphenethoxy)phenylthiol)propanoyl-CoA" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C39 H51 F3 N7 O18 P3 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-[4-[2-[3-(trifluoromethyl)phenyl]ethoxy]phenyl]sulfanylpropanethioate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-07-16 _chem_comp.pdbx_modified_date 2026-07-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1119.905 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JJZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RZ2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JJZ C4 C1 C 0 1 Y N N N N N -30.035 95.690 -28.246 -13.323 1.540 1.959 C4 A1JJZ 1 A1JJZ C14 C2 C 0 1 N N N N N N -35.831 100.393 -30.501 -4.257 5.045 -0.610 C14 A1JJZ 2 A1JJZ C5 C3 C 0 1 Y N N N N N -30.415 96.922 -28.749 -12.555 2.672 2.149 C5 A1JJZ 3 A1JJZ C6 C4 C 0 1 Y N N N N N -30.975 97.879 -27.913 -11.530 2.972 1.264 C6 A1JJZ 4 A1JJZ C11 C5 C 0 1 Y N N N N N -34.519 102.983 -28.082 -7.163 6.875 -2.177 C11 A1JJZ 5 A1JJZ C7 C6 C 0 1 N N N N N N -30.641 100.284 -28.046 -9.737 4.335 0.501 C7 A1JJZ 6 A1JJZ C8 C7 C 0 1 N N N N N N -31.136 101.427 -28.922 -9.001 5.623 0.874 C8 A1JJZ 7 A1JJZ C9 C8 C 0 1 Y N N N N N -32.628 101.699 -28.896 -7.906 5.885 -0.127 C9 A1JJZ 8 A1JJZ C10 C9 C 0 1 Y N N N N N -33.155 102.723 -28.108 -8.168 6.635 -1.258 C10 A1JJZ 9 A1JJZ C12 C10 C 0 1 Y N N N N N -35.395 102.234 -28.854 -5.898 6.359 -1.968 C12 A1JJZ 10 A1JJZ C13 C11 C 0 1 Y N N N N N -34.892 101.213 -29.657 -5.636 5.608 -0.838 C13 A1JJZ 11 A1JJZ N1 N1 N 0 1 N N N N N N -33.803 88.286 -28.648 -7.021 -3.689 -0.530 N1 A1JJZ 12 A1JJZ N2 N2 N 0 1 N N N N N N -34.785 86.995 -32.034 -2.397 -5.304 -0.221 N2 A1JJZ 13 A1JJZ C3 C12 C 0 1 Y N N N N N -30.215 95.381 -26.896 -13.068 0.701 0.882 C3 A1JJZ 14 A1JJZ N3 N3 N 0 1 Y N N N N N -35.549 90.972 -42.376 8.762 3.361 0.703 N3 A1JJZ 15 A1JJZ C1 C13 C 0 1 N N N N N N -31.174 93.056 -23.954 -14.125 -2.697 -1.274 C1 A1JJZ 16 A1JJZ C2 C14 C 0 1 N N R N N N -31.210 93.028 -25.471 -13.252 -1.540 -0.785 C2 A1JJZ 17 A1JJZ S1 S1 S 0 1 N N N N N N -29.747 93.799 -26.218 -14.043 -0.747 0.642 S1 A1JJZ 18 A1JJZ O1 O1 O 0 1 N N N N N N -31.377 99.098 -28.407 -10.775 4.087 1.451 O1 A1JJZ 19 A1JJZ F1 F1 F 0 1 N N N N N N -35.294 99.276 -30.986 -4.329 3.649 -0.538 F1 A1JJZ 20 A1JJZ F2 F2 F 0 1 N N N N N N -36.899 99.988 -29.839 -3.422 5.414 -1.670 F2 A1JJZ 21 A1JJZ F3 F3 F 0 1 N N N N N N -36.331 101.057 -31.540 -3.740 5.548 0.588 F3 A1JJZ 22 A1JJZ C15 C15 C 0 1 Y N N N N N -33.520 100.958 -29.673 -6.639 5.373 0.084 C15 A1JJZ 23 A1JJZ C16 C16 C 0 1 Y N N N N N -31.169 97.576 -26.577 -11.275 2.135 0.187 C16 A1JJZ 24 A1JJZ C17 C17 C 0 1 Y N N N N N -30.790 96.345 -26.076 -12.045 1.005 -0.007 C17 A1JJZ 25 A1JJZ C18 C18 C 0 1 N N N N N N -31.396 91.609 -25.961 -11.899 -2.067 -0.380 C18 A1JJZ 26 A1JJZ O2 O2 O 0 1 N N N N N N -31.779 90.690 -25.223 -11.678 -2.343 0.780 O2 A1JJZ 27 A1JJZ S2 S2 S 0 1 N N N N N N -31.138 91.392 -27.701 -10.675 -2.276 -1.559 S2 A1JJZ 28 A1JJZ C19 C19 C 0 1 N N N N N N -31.905 89.735 -27.872 -9.338 -2.909 -0.514 C19 A1JJZ 29 A1JJZ C20 C20 C 0 1 N N N N N N -33.356 89.666 -28.359 -8.102 -3.177 -1.375 C20 A1JJZ 30 A1JJZ C21 C21 C 0 1 N N N N N N -33.374 87.603 -29.717 -5.827 -3.997 -1.075 C21 A1JJZ 31 A1JJZ O3 O3 O 0 1 N N N N N N -32.605 88.109 -30.542 -5.649 -3.851 -2.266 O3 A1JJZ 32 A1JJZ C22 C22 C 0 1 N N N N N N -33.864 86.188 -29.889 -4.715 -4.524 -0.206 C22 A1JJZ 33 A1JJZ C23 C23 C 0 1 N N N N N N -34.194 85.861 -31.332 -3.478 -4.792 -1.066 C23 A1JJZ 34 A1JJZ C24 C24 C 0 1 N N N N N N -36.032 87.417 -31.820 -1.204 -5.613 -0.766 C24 A1JJZ 35 A1JJZ O4 O4 O 0 1 N N N N N N -36.799 86.899 -30.988 -1.054 -5.557 -1.969 O4 A1JJZ 36 A1JJZ C25 C25 C 0 1 N N R N N N -36.498 88.591 -32.687 -0.055 -6.026 0.118 C25 A1JJZ 37 A1JJZ O5 O5 O 0 1 N N N N N N -35.454 88.947 -33.599 -0.521 -6.186 1.459 O5 A1JJZ 38 A1JJZ C26 C26 C 0 1 N N N N N N -36.929 89.840 -31.845 1.031 -4.950 0.079 C26 A1JJZ 39 A1JJZ C27 C27 C 0 1 N N N N N N -35.703 90.745 -31.615 1.549 -4.799 -1.352 C27 A1JJZ 40 A1JJZ C28 C28 C 0 1 N N N N N N -37.553 89.459 -30.495 0.447 -3.618 0.554 C28 A1JJZ 41 A1JJZ C29 C29 C 0 1 N N N N N N -38.123 90.577 -32.460 2.185 -5.357 0.998 C29 A1JJZ 42 A1JJZ O6 O6 O 0 1 N N N N N N -37.831 91.320 -33.654 3.200 -4.352 0.962 O6 A1JJZ 43 A1JJZ P1 P1 P 0 1 N N N N N N -38.855 91.302 -34.887 4.563 -4.452 1.812 P1 A1JJZ 44 A1JJZ O7 O7 O 0 1 N N N N N N -40.289 90.937 -34.747 4.221 -4.399 3.385 O7 A1JJZ 45 A1JJZ O8 O8 O 0 1 N N N N N N -38.243 92.299 -35.790 5.248 -5.726 1.499 O8 A1JJZ 46 A1JJZ O9 O9 O 0 1 N N N N N N -38.555 89.767 -35.167 5.525 -3.218 1.431 O9 A1JJZ 47 A1JJZ P2 P2 P 0 1 N N N N N N -38.226 88.714 -36.299 7.105 -2.944 1.579 P2 A1JJZ 48 A1JJZ O10 O10 O 0 1 N N N N N N -39.407 87.808 -36.370 7.856 -4.143 1.144 O10 A1JJZ 49 A1JJZ O11 O11 O 0 1 N N N N N N -36.924 88.057 -35.998 7.452 -2.622 3.118 O11 A1JJZ 50 A1JJZ O12 O12 O 0 1 N N N N N N -38.051 89.880 -37.379 7.520 -1.689 0.660 O12 A1JJZ 51 A1JJZ C30 C30 C 0 1 N N N N N N -37.283 89.623 -38.580 8.873 -1.260 0.493 C30 A1JJZ 52 A1JJZ C31 C31 C 0 1 N N R N N N -37.898 90.372 -39.745 8.913 -0.047 -0.438 C31 A1JJZ 53 A1JJZ O13 O13 O 0 1 N N N N N N -36.887 91.155 -40.429 8.275 1.075 0.195 O13 A1JJZ 54 A1JJZ C32 C32 C 0 1 N N R N N N -36.883 90.775 -41.808 8.981 2.259 -0.236 C32 A1JJZ 55 A1JJZ C33 C33 C 0 1 Y N N N N N -34.318 90.732 -41.818 8.411 3.245 2.016 C33 A1JJZ 56 A1JJZ N4 N4 N 0 1 Y N N N N N -33.317 91.116 -42.573 8.301 4.425 2.553 N4 A1JJZ 57 A1JJZ C34 C34 C 0 1 Y N N N N N -33.928 91.654 -43.694 8.573 5.371 1.622 C34 A1JJZ 58 A1JJZ C35 C35 C 0 1 Y N N N N N -33.411 92.243 -44.860 8.616 6.776 1.624 C35 A1JJZ 59 A1JJZ N5 N5 N 0 1 N N N N N N -32.111 92.424 -45.080 8.326 7.491 2.772 N5 A1JJZ 60 A1JJZ N6 N6 N 0 1 Y N N N N N -34.301 92.712 -45.773 8.941 7.401 0.497 N6 A1JJZ 61 A1JJZ C36 C36 C 0 1 Y N N N N N -35.608 92.551 -45.539 9.220 6.726 -0.603 C36 A1JJZ 62 A1JJZ N7 N7 N 0 1 Y N N N N N -36.206 92.006 -44.486 9.193 5.411 -0.652 N7 A1JJZ 63 A1JJZ C37 C37 C 0 1 Y N N N N N -35.305 91.573 -43.586 8.878 4.700 0.426 C37 A1JJZ 64 A1JJZ C38 C38 C 0 1 N N R N N N -37.388 89.346 -41.828 10.467 1.818 -0.224 C38 A1JJZ 65 A1JJZ O14 O14 O 0 1 N N N N N N -37.693 89.117 -43.181 11.241 2.611 -1.127 O14 A1JJZ 66 A1JJZ C39 C39 C 0 1 N N S N N N -38.532 89.474 -40.820 10.375 0.351 -0.718 C39 A1JJZ 67 A1JJZ O15 O15 O 0 1 N N N N N N -39.706 90.106 -41.334 10.658 0.275 -2.117 O15 A1JJZ 68 A1JJZ P3 P3 P 0 1 N N N N N N -41.173 89.407 -41.278 11.853 -0.618 -2.722 P3 A1JJZ 69 A1JJZ O16 O16 O 0 1 N N N N N N -41.270 88.299 -40.240 11.798 -0.569 -4.331 O16 A1JJZ 70 A1JJZ O17 O17 O 0 1 N N N N N N -42.084 90.610 -41.072 13.267 -0.038 -2.216 O17 A1JJZ 71 A1JJZ O18 O18 O 0 1 N N N N N N -41.369 88.648 -42.586 11.703 -2.018 -2.266 O18 A1JJZ 72 A1JJZ H1 H1 H 0 1 N N N N N N -29.594 94.958 -28.906 -14.118 1.304 2.651 H1 A1JJZ 73 A1JJZ H2 H2 H 0 1 N N N N N N -30.275 97.140 -29.797 -12.753 3.324 2.987 H2 A1JJZ 74 A1JJZ H3 H3 H 0 1 N N N N N N -34.901 103.775 -27.455 -7.368 7.462 -3.060 H3 A1JJZ 75 A1JJZ H4 H4 H 0 1 N N N N N N -29.566 100.122 -28.215 -10.171 4.439 -0.493 H4 A1JJZ 76 A1JJZ H5 H5 H 0 1 N N N N N N -30.814 100.523 -26.986 -9.034 3.501 0.505 H5 A1JJZ 77 A1JJZ H6 H6 H 0 1 N N N N N N -30.856 101.198 -29.961 -9.703 6.457 0.871 H6 A1JJZ 78 A1JJZ H7 H7 H 0 1 N N N N N N -30.623 102.344 -28.597 -8.566 5.519 1.869 H7 A1JJZ 79 A1JJZ H8 H8 H 0 1 N N N N N N -32.489 103.325 -27.507 -9.158 7.035 -1.423 H8 A1JJZ 80 A1JJZ H9 H9 H 0 1 N N N N N N -36.455 102.440 -28.833 -5.115 6.543 -2.688 H9 A1JJZ 81 A1JJZ H10 H10 H 0 1 N N N N N N -34.449 87.847 -28.023 -7.163 -3.806 0.423 H10 A1JJZ 82 A1JJZ H11 H11 H 0 1 N N N N N N -34.228 87.480 -32.709 -2.540 -5.421 0.732 H11 A1JJZ 83 A1JJZ H12 H12 H 0 1 N N N N N N -32.081 92.578 -23.556 -14.315 -3.383 -0.449 H12 A1JJZ 84 A1JJZ H13 H13 H 0 1 N N N N N N -30.287 92.512 -23.598 -15.071 -2.306 -1.647 H13 A1JJZ 85 A1JJZ H14 H14 H 0 1 N N N N N N -31.128 94.099 -23.608 -13.610 -3.227 -2.076 H14 A1JJZ 86 A1JJZ H15 H15 H 0 1 N N N N N N -32.064 93.631 -25.812 -13.133 -0.811 -1.586 H15 A1JJZ 87 A1JJZ H16 H16 H 0 1 N N N N N N -33.139 100.167 -30.302 -6.434 4.786 0.968 H16 A1JJZ 88 A1JJZ H17 H17 H 0 1 N N N N N N -31.620 98.306 -25.921 -10.477 2.370 -0.502 H17 A1JJZ 89 A1JJZ H18 H18 H 0 1 N N N N N N -30.943 96.128 -25.029 -11.846 0.354 -0.845 H18 A1JJZ 90 A1JJZ H19 H19 H 0 1 N N N N N N -31.867 89.253 -26.884 -9.095 -2.171 0.251 H19 A1JJZ 91 A1JJZ H20 H20 H 0 1 N N N N N N -31.293 89.162 -28.584 -9.657 -3.836 -0.038 H20 A1JJZ 92 A1JJZ H21 H21 H 0 1 N N N N N N -33.446 90.264 -29.278 -7.783 -2.250 -1.851 H21 A1JJZ 93 A1JJZ H22 H22 H 0 1 N N N N N N -34.008 90.090 -27.581 -8.345 -3.914 -2.140 H22 A1JJZ 94 A1JJZ H23 H23 H 0 1 N N N N N N -34.770 86.052 -29.280 -4.472 -3.787 0.560 H23 A1JJZ 95 A1JJZ H24 H24 H 0 1 N N N N N N -33.081 85.498 -29.541 -5.034 -5.451 0.271 H24 A1JJZ 96 A1JJZ H25 H25 H 0 1 N N N N N N -34.906 85.023 -31.351 -3.159 -3.865 -1.543 H25 A1JJZ 97 A1JJZ H26 H26 H 0 1 N N N N N N -33.268 85.568 -31.849 -3.721 -5.529 -1.831 H26 A1JJZ 98 A1JJZ H27 H27 H 0 1 N N N N N N -37.378 88.259 -33.258 0.356 -6.971 -0.239 H27 A1JJZ 99 A1JJZ H28 H28 H 0 1 N N N N N N -35.200 88.184 -34.104 -0.900 -5.383 1.842 H28 A1JJZ 100 A1JJZ H29 H29 H 0 1 N N N N N N -36.001 91.624 -31.024 0.763 -4.378 -1.980 H29 A1JJZ 101 A1JJZ H30 H30 H 0 1 N N N N N N -34.929 90.183 -31.072 2.412 -4.134 -1.358 H30 A1JJZ 102 A1JJZ H31 H31 H 0 1 N N N N N N -35.303 91.074 -32.585 1.839 -5.775 -1.739 H31 A1JJZ 103 A1JJZ H32 H32 H 0 1 N N N N N N -37.835 90.372 -29.950 0.078 -3.726 1.574 H32 A1JJZ 104 A1JJZ H33 H33 H 0 1 N N N N N N -38.448 88.843 -30.666 1.221 -2.851 0.527 H33 A1JJZ 105 A1JJZ H34 H34 H 0 1 N N N N N N -36.823 88.889 -29.902 -0.375 -3.328 -0.101 H34 A1JJZ 106 A1JJZ H35 H35 H 0 1 N N N N N N -38.514 91.279 -31.709 1.816 -5.465 2.018 H35 A1JJZ 107 A1JJZ H36 H36 H 0 1 N N N N N N -38.895 89.832 -32.702 2.601 -6.306 0.660 H36 A1JJZ 108 A1JJZ H37 H37 H 0 1 N N N N N N -40.809 91.456 -35.349 3.770 -3.590 3.662 H37 A1JJZ 109 A1JJZ H38 H38 H 0 1 N N N N N N -37.057 87.122 -35.894 6.994 -1.847 3.470 H38 A1JJZ 110 A1JJZ H39 H39 H 0 1 N N N N N N -37.288 88.544 -38.794 9.290 -0.988 1.463 H39 A1JJZ 111 A1JJZ H40 H40 H 0 1 N N N N N N -36.247 89.962 -38.432 9.460 -2.070 0.060 H40 A1JJZ 112 A1JJZ H41 H41 H 0 1 N N N N N N -38.677 91.044 -39.355 8.406 -0.282 -1.374 H41 A1JJZ 113 A1JJZ H42 H42 H 0 1 N N N N N N -37.600 91.400 -42.360 8.671 2.546 -1.241 H42 A1JJZ 114 A1JJZ H43 H43 H 0 1 N N N N N N -34.187 90.271 -40.850 8.248 2.311 2.533 H43 A1JJZ 115 A1JJZ H44 H44 H 0 1 N N N N N N -31.983 92.911 -45.944 8.090 7.024 3.589 H44 A1JJZ 116 A1JJZ H45 H45 H 0 1 N N N N N N -31.718 92.961 -44.333 8.358 8.461 2.761 H45 A1JJZ 117 A1JJZ H46 H46 H 0 1 N N N N N N -36.268 92.914 -46.313 9.480 7.274 -1.497 H46 A1JJZ 118 A1JJZ H47 H47 H 0 1 N N N N N N -36.618 88.657 -41.450 10.878 1.865 0.784 H47 A1JJZ 119 A1JJZ H48 H48 H 0 1 N N N N N N -38.021 88.232 -43.287 11.254 3.553 -0.911 H48 A1JJZ 120 A1JJZ H49 H49 H 0 1 N N N N N N -38.764 88.488 -40.391 11.057 -0.285 -0.155 H49 A1JJZ 121 A1JJZ H50 H50 H 0 1 N N N N N N -41.421 87.468 -40.676 12.490 -1.087 -4.764 H50 A1JJZ 122 A1JJZ H51 H51 H 0 1 N N N N N N -42.658 90.705 -41.823 13.433 0.878 -2.480 H51 A1JJZ 123 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JJZ N6 C36 SING Y N 1 A1JJZ N6 C35 DOUB Y N 2 A1JJZ C36 N7 DOUB Y N 3 A1JJZ N5 C35 SING N N 4 A1JJZ C35 C34 SING Y N 5 A1JJZ N7 C37 SING Y N 6 A1JJZ C34 C37 DOUB Y N 7 A1JJZ C34 N4 SING Y N 8 A1JJZ C37 N3 SING Y N 9 A1JJZ O14 C38 SING N N 10 A1JJZ O18 P3 DOUB N N 11 A1JJZ N4 C33 DOUB Y N 12 A1JJZ N3 C33 SING Y N 13 A1JJZ N3 C32 SING N N 14 A1JJZ C38 C32 SING N N 15 A1JJZ C38 C39 SING N N 16 A1JJZ C32 O13 SING N N 17 A1JJZ O15 P3 SING N N 18 A1JJZ O15 C39 SING N N 19 A1JJZ P3 O17 SING N N 20 A1JJZ P3 O16 SING N N 21 A1JJZ C39 C31 SING N N 22 A1JJZ O13 C31 SING N N 23 A1JJZ C31 C30 SING N N 24 A1JJZ C30 O12 SING N N 25 A1JJZ O12 P2 SING N N 26 A1JJZ O10 P2 DOUB N N 27 A1JJZ P2 O11 SING N N 28 A1JJZ P2 O9 SING N N 29 A1JJZ O8 P1 DOUB N N 30 A1JJZ O9 P1 SING N N 31 A1JJZ P1 O7 SING N N 32 A1JJZ P1 O6 SING N N 33 A1JJZ O6 C29 SING N N 34 A1JJZ O5 C25 SING N N 35 A1JJZ C25 C26 SING N N 36 A1JJZ C25 C24 SING N N 37 A1JJZ C29 C26 SING N N 38 A1JJZ N2 C24 SING N N 39 A1JJZ N2 C23 SING N N 40 A1JJZ C26 C27 SING N N 41 A1JJZ C26 C28 SING N N 42 A1JJZ C24 O4 DOUB N N 43 A1JJZ F3 C14 SING N N 44 A1JJZ C23 C22 SING N N 45 A1JJZ F1 C14 SING N N 46 A1JJZ O3 C21 DOUB N N 47 A1JJZ C14 F2 SING N N 48 A1JJZ C14 C13 SING N N 49 A1JJZ C22 C21 SING N N 50 A1JJZ C21 N1 SING N N 51 A1JJZ C15 C13 DOUB Y N 52 A1JJZ C15 C9 SING Y N 53 A1JJZ C13 C12 SING Y N 54 A1JJZ C8 C9 SING N N 55 A1JJZ C8 C7 SING N N 56 A1JJZ C9 C10 DOUB Y N 57 A1JJZ C12 C11 DOUB Y N 58 A1JJZ C5 C4 DOUB Y N 59 A1JJZ C5 C6 SING Y N 60 A1JJZ N1 C20 SING N N 61 A1JJZ O1 C7 SING N N 62 A1JJZ O1 C6 SING N N 63 A1JJZ C20 C19 SING N N 64 A1JJZ C4 C3 SING Y N 65 A1JJZ C10 C11 SING Y N 66 A1JJZ C6 C16 DOUB Y N 67 A1JJZ C19 S2 SING N N 68 A1JJZ S2 C18 SING N N 69 A1JJZ C3 S1 SING N N 70 A1JJZ C3 C17 DOUB Y N 71 A1JJZ C16 C17 SING Y N 72 A1JJZ S1 C2 SING N N 73 A1JJZ C18 C2 SING N N 74 A1JJZ C18 O2 DOUB N N 75 A1JJZ C2 C1 SING N N 76 A1JJZ C4 H1 SING N N 77 A1JJZ C5 H2 SING N N 78 A1JJZ C11 H3 SING N N 79 A1JJZ C7 H4 SING N N 80 A1JJZ C7 H5 SING N N 81 A1JJZ C8 H6 SING N N 82 A1JJZ C8 H7 SING N N 83 A1JJZ C10 H8 SING N N 84 A1JJZ C12 H9 SING N N 85 A1JJZ N1 H10 SING N N 86 A1JJZ N2 H11 SING N N 87 A1JJZ C1 H12 SING N N 88 A1JJZ C1 H13 SING N N 89 A1JJZ C1 H14 SING N N 90 A1JJZ C2 H15 SING N N 91 A1JJZ C15 H16 SING N N 92 A1JJZ C16 H17 SING N N 93 A1JJZ C17 H18 SING N N 94 A1JJZ C19 H19 SING N N 95 A1JJZ C19 H20 SING N N 96 A1JJZ C20 H21 SING N N 97 A1JJZ C20 H22 SING N N 98 A1JJZ C22 H23 SING N N 99 A1JJZ C22 H24 SING N N 100 A1JJZ C23 H25 SING N N 101 A1JJZ C23 H26 SING N N 102 A1JJZ C25 H27 SING N N 103 A1JJZ O5 H28 SING N N 104 A1JJZ C27 H29 SING N N 105 A1JJZ C27 H30 SING N N 106 A1JJZ C27 H31 SING N N 107 A1JJZ C28 H32 SING N N 108 A1JJZ C28 H33 SING N N 109 A1JJZ C28 H34 SING N N 110 A1JJZ C29 H35 SING N N 111 A1JJZ C29 H36 SING N N 112 A1JJZ O7 H37 SING N N 113 A1JJZ O11 H38 SING N N 114 A1JJZ C30 H39 SING N N 115 A1JJZ C30 H40 SING N N 116 A1JJZ C31 H41 SING N N 117 A1JJZ C32 H42 SING N N 118 A1JJZ C33 H43 SING N N 119 A1JJZ N5 H44 SING N N 120 A1JJZ N5 H45 SING N N 121 A1JJZ C36 H46 SING N N 122 A1JJZ C38 H47 SING N N 123 A1JJZ O14 H48 SING N N 124 A1JJZ C39 H49 SING N N 125 A1JJZ O16 H50 SING N N 126 A1JJZ O17 H51 SING N N 127 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JJZ InChI InChI 1.06 "InChI=1S/C39H51F3N7O18P3S2/c1-22(72-26-9-7-25(8-10-26)62-15-12-23-5-4-6-24(17-23)39(40,41)42)37(54)71-16-14-44-28(50)11-13-45-35(53)32(52)38(2,3)19-64-70(60,61)67-69(58,59)63-18-27-31(66-68(55,56)57)30(51)36(65-27)49-21-48-29-33(43)46-20-47-34(29)49/h4-10,17,20-22,27,30-32,36,51-52H,11-16,18-19H2,1-3H3,(H,44,50)(H,45,53)(H,58,59)(H,60,61)(H2,43,46,47)(H2,55,56,57)/t22-,27-,30-,31-,32+,36-/m1/s1" A1JJZ InChIKey InChI 1.06 HFVAVXPPKJIDGQ-IRGRYGCCSA-N A1JJZ SMILES_CANONICAL CACTVS 3.385 "C[C@@H](Sc1ccc(OCCc2cccc(c2)C(F)(F)F)cc1)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O[P](O)(O)=O)n4cnc5c(N)ncnc45" A1JJZ SMILES CACTVS 3.385 "C[CH](Sc1ccc(OCCc2cccc(c2)C(F)(F)F)cc1)C(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O[P](O)(O)=O)n4cnc5c(N)ncnc45" A1JJZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)Sc4ccc(cc4)OCCc5cccc(c5)C(F)(F)F" A1JJZ SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)Sc4ccc(cc4)OCCc5cccc(c5)C(F)(F)F" # _pdbx_chem_comp_identifier.comp_id A1JJZ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-[4-[2-[3-(trifluoromethyl)phenyl]ethoxy]phenyl]sulfanylpropanethioate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JJZ "Create component" 2025-07-16 PDBE A1JJZ "Initial release" 2026-07-29 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1JJZ _pdbx_chem_comp_synonyms.name "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-[4-[2-[3-(trifluoromethyl)phenyl]ethoxy]phenyl]sulfanylpropanethioate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #