data_A1JK6 # _chem_comp.id A1JK6 _chem_comp.name "2-[[2-[(1~{R},5~{S})-7-phenyl-3,7-diazabicyclo[3.3.1]nonan-3-yl]-1,3-thiazol-4-yl]methyl]-3,4-dihydro-1~{H}-isoquinoline-7-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H30 N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-07-21 _chem_comp.pdbx_modified_date 2025-12-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 474.618 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JK6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9S1O _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JK6 C1 C1 C 0 1 Y N N N N N -32.576 41.211 9.488 4.237 -1.448 0.116 C1 A1JK6 1 A1JK6 C2 C2 C 0 1 Y N N N N N -32.937 42.085 8.469 5.458 -0.842 0.417 C2 A1JK6 2 A1JK6 C3 C3 C 0 1 Y N N N N N -32.766 41.724 7.145 5.573 0.530 0.354 C3 A1JK6 3 A1JK6 C7 C4 C 0 1 N N N N N N -30.961 36.514 5.793 1.122 3.757 -0.790 C7 A1JK6 4 A1JK6 C8 C5 C 0 1 Y N N N N N -29.464 36.477 5.817 -0.132 3.348 -0.062 C8 A1JK6 5 A1JK6 C9 C6 C 0 1 Y N N N N N -28.714 36.241 4.713 -0.566 3.972 1.033 C9 A1JK6 6 A1JK6 C10 C7 C 0 1 Y N N N N N -27.461 36.589 6.763 -1.949 2.091 0.251 C10 A1JK6 7 A1JK6 C11 C8 C 0 1 N N N N N N -26.885 37.381 9.024 -3.935 1.069 0.986 C11 A1JK6 8 A1JK6 C12 C9 C 0 1 N N S N N N -26.413 38.825 9.226 -4.868 -0.118 0.734 C12 A1JK6 9 A1JK6 C13 C10 C 0 1 N N N N N N -24.916 38.911 8.939 -5.464 0.007 -0.673 C13 A1JK6 10 A1JK6 C14 C11 C 0 1 N N R N N N -24.672 38.477 7.493 -4.308 0.009 -1.681 C14 A1JK6 11 A1JK6 C15 C12 C 0 1 N N N N N N -25.416 39.421 6.550 -3.524 -1.298 -1.541 C15 A1JK6 12 A1JK6 C16 C13 C 0 1 N N N N N N -27.147 39.819 8.332 -4.072 -1.422 0.823 C16 A1JK6 13 A1JK6 C19 C14 C 0 1 Y N N N N N -28.262 40.773 3.688 -1.671 -4.617 1.055 C19 A1JK6 14 A1JK6 C20 C15 C 0 1 Y N N N N N -29.089 41.790 4.103 -0.599 -4.801 0.201 C20 A1JK6 15 A1JK6 C21 C16 C 0 1 Y N N N N N -29.186 42.090 5.447 -0.321 -3.865 -0.777 C21 A1JK6 16 A1JK6 C22 C17 C 0 1 Y N N N N N -28.459 41.370 6.381 -1.115 -2.742 -0.906 C22 A1JK6 17 A1JK6 C24 C18 C 0 1 N N N N N N -31.304 38.221 7.517 2.068 1.532 -0.701 C24 A1JK6 18 A1JK6 O1 O1 O 0 1 N N N N N N -32.064 41.051 11.781 3.036 -3.440 -0.080 O1 A1JK6 19 A1JK6 C C19 C 0 1 N N N N N N -32.760 41.558 10.921 4.100 -2.917 0.182 C A1JK6 20 A1JK6 O O2 O 0 1 N N N N N N -33.761 42.357 11.204 5.155 -3.677 0.534 O A1JK6 21 A1JK6 C26 C20 C 0 1 Y N N N N N -32.067 39.965 9.154 3.146 -0.656 -0.242 C26 A1JK6 22 A1JK6 C25 C21 C 0 1 Y N N N N N -31.866 39.591 7.827 3.274 0.720 -0.304 C25 A1JK6 23 A1JK6 C4 C22 C 0 1 Y N N N N N -32.238 40.478 6.802 4.485 1.313 -0.008 C4 A1JK6 24 A1JK6 N N1 N 0 1 N N N N N N -31.566 37.807 6.131 2.248 2.937 -0.323 N A1JK6 25 A1JK6 C6 C23 C 0 1 N N N N N N -31.169 38.870 5.201 3.528 3.446 -0.854 C6 A1JK6 26 A1JK6 C5 C24 C 0 1 N N N N N N -32.071 40.086 5.353 4.665 2.809 -0.056 C5 A1JK6 27 A1JK6 N1 N2 N 0 1 Y N N N N N -28.747 36.656 7.001 -0.894 2.344 -0.461 N1 A1JK6 28 A1JK6 S S1 S 0 1 Y N N N N N -27.032 36.246 5.099 -2.051 3.185 1.560 S A1JK6 29 A1JK6 N2 N3 N 0 1 N N N N N N -26.509 36.839 7.711 -2.861 1.081 -0.014 N2 A1JK6 30 A1JK6 C23 C25 C 0 1 N N N N N N -25.103 37.020 7.329 -3.387 1.193 -1.379 C23 A1JK6 31 A1JK6 N3 N4 N 0 1 N N N N N N -26.826 39.630 6.909 -2.998 -1.419 -0.177 N3 A1JK6 32 A1JK6 C17 C26 C 0 1 Y N N N N N -27.608 40.346 5.968 -2.193 -2.554 -0.050 C17 A1JK6 33 A1JK6 C18 C27 C 0 1 Y N N N N N -27.514 40.055 4.608 -2.472 -3.499 0.928 C18 A1JK6 34 A1JK6 H1 H1 H 0 1 N N N N N N -33.353 43.051 8.713 6.309 -1.445 0.699 H1 A1JK6 35 A1JK6 H2 H2 H 0 1 N N N N N N -33.045 42.416 6.365 6.517 0.999 0.588 H2 A1JK6 36 A1JK6 H7 H3 H 0 1 N N N N N N -31.330 35.769 6.513 0.985 3.609 -1.862 H7 A1JK6 37 A1JK6 H8 H4 H 0 1 N N N N N N -31.291 36.240 4.780 1.331 4.808 -0.592 H8 A1JK6 38 A1JK6 H9 H5 H 0 1 N N N N N N -29.115 36.072 3.725 -0.090 4.814 1.513 H9 A1JK6 39 A1JK6 H10 H6 H 0 1 N N N N N N -27.981 37.353 9.115 -4.503 1.998 0.919 H10 A1JK6 40 A1JK6 H11 H7 H 0 1 N N N N N N -26.436 36.751 9.806 -3.501 0.984 1.983 H11 A1JK6 41 A1JK6 H12 H8 H 0 1 N N N N N N -26.585 39.105 10.276 -5.669 -0.123 1.474 H12 A1JK6 42 A1JK6 H13 H9 H 0 1 N N N N N N -24.570 39.946 9.079 -6.123 -0.838 -0.871 H13 A1JK6 43 A1JK6 H14 H10 H 0 1 N N N N N N -24.368 38.246 9.623 -6.024 0.938 -0.754 H14 A1JK6 44 A1JK6 H15 H11 H 0 1 N N N N N N -23.595 38.549 7.283 -4.703 0.097 -2.694 H15 A1JK6 45 A1JK6 H16 H12 H 0 1 N N N N N N -24.907 40.396 6.563 -4.183 -2.141 -1.752 H16 A1JK6 46 A1JK6 H17 H13 H 0 1 N N N N N N -25.376 39.000 5.535 -2.696 -1.302 -2.251 H17 A1JK6 47 A1JK6 H18 H14 H 0 1 N N N N N N -26.861 40.839 8.627 -3.639 -1.516 1.820 H18 A1JK6 48 A1JK6 H19 H15 H 0 1 N N N N N N -28.230 39.688 8.471 -4.737 -2.267 0.638 H19 A1JK6 49 A1JK6 H21 H16 H 0 1 N N N N N N -28.195 40.532 2.637 -1.885 -5.351 1.818 H21 A1JK6 50 A1JK6 H22 H17 H 0 1 N N N N N N -29.661 42.352 3.380 0.023 -5.679 0.299 H22 A1JK6 51 A1JK6 H23 H18 H 0 1 N N N N N N -29.833 42.891 5.772 0.517 -4.011 -1.442 H23 A1JK6 52 A1JK6 H24 H19 H 0 1 N N N N N N -28.552 41.603 7.432 -0.898 -2.010 -1.670 H24 A1JK6 53 A1JK6 H27 H20 H 0 1 N N N N N N -31.764 37.489 8.197 1.928 1.465 -1.780 H27 A1JK6 54 A1JK6 H28 H21 H 0 1 N N N N N N -30.216 38.240 7.680 1.186 1.135 -0.198 H28 A1JK6 55 A1JK6 H H22 H 0 1 N N N N N N -33.831 42.456 12.146 5.017 -4.634 0.563 H A1JK6 56 A1JK6 H29 H23 H 0 1 N N N N N N -31.821 39.268 9.941 2.198 -1.120 -0.472 H29 A1JK6 57 A1JK6 H5 H25 H 0 1 N N N N N N -31.242 38.493 4.170 3.619 3.180 -1.906 H5 A1JK6 58 A1JK6 H6 H26 H 0 1 N N N N N N -30.130 39.163 5.411 3.563 4.530 -0.746 H6 A1JK6 59 A1JK6 H3 H27 H 0 1 N N N N N N -33.059 39.852 4.930 4.663 3.207 0.959 H3 A1JK6 60 A1JK6 H4 H28 H 0 1 N N N N N N -31.628 40.930 4.804 5.617 3.044 -0.532 H4 A1JK6 61 A1JK6 H25 H29 H 0 1 N N N N N N -24.975 36.724 6.277 -2.558 1.198 -2.088 H25 A1JK6 62 A1JK6 H26 H30 H 0 1 N N N N N N -24.472 36.385 7.968 -3.948 2.124 -1.476 H26 A1JK6 63 A1JK6 H20 H31 H 0 1 N N N N N N -26.856 39.268 4.270 -3.310 -3.356 1.595 H20 A1JK6 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JK6 O C SING N N 1 A1JK6 C O1 DOUB N N 2 A1JK6 C1 C SING N N 3 A1JK6 C1 C2 DOUB Y N 4 A1JK6 C2 C3 SING Y N 5 A1JK6 C3 C4 DOUB Y N 6 A1JK6 C4 C5 SING N N 7 A1JK6 C5 C6 SING N N 8 A1JK6 C6 N SING N N 9 A1JK6 C7 N SING N N 10 A1JK6 C8 C7 SING N N 11 A1JK6 C8 C9 DOUB Y N 12 A1JK6 C9 S SING Y N 13 A1JK6 S C10 SING Y N 14 A1JK6 C10 N1 DOUB Y N 15 A1JK6 N1 C8 SING Y N 16 A1JK6 N2 C10 SING N N 17 A1JK6 N2 C11 SING N N 18 A1JK6 C11 C12 SING N N 19 A1JK6 C12 C13 SING N N 20 A1JK6 C13 C14 SING N N 21 A1JK6 C15 C14 SING N N 22 A1JK6 N3 C15 SING N N 23 A1JK6 C16 N3 SING N N 24 A1JK6 C12 C16 SING N N 25 A1JK6 C17 N3 SING N N 26 A1JK6 C17 C18 DOUB Y N 27 A1JK6 C18 C19 SING Y N 28 A1JK6 C19 C20 DOUB Y N 29 A1JK6 C20 C21 SING Y N 30 A1JK6 C21 C22 DOUB Y N 31 A1JK6 C22 C17 SING Y N 32 A1JK6 C14 C23 SING N N 33 A1JK6 C23 N2 SING N N 34 A1JK6 N C24 SING N N 35 A1JK6 C24 C25 SING N N 36 A1JK6 C4 C25 SING Y N 37 A1JK6 C25 C26 DOUB Y N 38 A1JK6 C26 C1 SING Y N 39 A1JK6 C2 H1 SING N N 40 A1JK6 C3 H2 SING N N 41 A1JK6 C7 H7 SING N N 42 A1JK6 C7 H8 SING N N 43 A1JK6 C9 H9 SING N N 44 A1JK6 C11 H10 SING N N 45 A1JK6 C11 H11 SING N N 46 A1JK6 C12 H12 SING N N 47 A1JK6 C13 H13 SING N N 48 A1JK6 C13 H14 SING N N 49 A1JK6 C14 H15 SING N N 50 A1JK6 C15 H16 SING N N 51 A1JK6 C15 H17 SING N N 52 A1JK6 C16 H18 SING N N 53 A1JK6 C16 H19 SING N N 54 A1JK6 C19 H21 SING N N 55 A1JK6 C20 H22 SING N N 56 A1JK6 C21 H23 SING N N 57 A1JK6 C22 H24 SING N N 58 A1JK6 C24 H27 SING N N 59 A1JK6 C24 H28 SING N N 60 A1JK6 O H SING N N 61 A1JK6 C26 H29 SING N N 62 A1JK6 C6 H5 SING N N 63 A1JK6 C6 H6 SING N N 64 A1JK6 C5 H3 SING N N 65 A1JK6 C5 H4 SING N N 66 A1JK6 C23 H25 SING N N 67 A1JK6 C23 H26 SING N N 68 A1JK6 C18 H20 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JK6 InChI InChI 1.06 "InChI=1S/C27H30N4O2S/c32-26(33)22-7-6-21-8-9-29(16-23(21)11-22)17-24-18-34-27(28-24)31-14-19-10-20(15-31)13-30(12-19)25-4-2-1-3-5-25/h1-7,11,18-20H,8-10,12-17H2,(H,32,33)/t19-,20+" A1JK6 InChIKey InChI 1.06 XGAITRPKSKWJAF-BGYRXZFFSA-N A1JK6 SMILES_CANONICAL CACTVS 3.385 "OC(=O)c1ccc2CCN(Cc3csc(n3)N4C[C@H]5C[C@@H](C4)CN(C5)c6ccccc6)Cc2c1" A1JK6 SMILES CACTVS 3.385 "OC(=O)c1ccc2CCN(Cc3csc(n3)N4C[CH]5C[CH](C4)CN(C5)c6ccccc6)Cc2c1" A1JK6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N2C[C@H]3C[C@@H](C2)CN(C3)c4nc(cs4)CN5CCc6ccc(cc6C5)C(=O)O" A1JK6 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N2CC3CC(C2)CN(C3)c4nc(cs4)CN5CCc6ccc(cc6C5)C(=O)O" # _pdbx_chem_comp_identifier.comp_id A1JK6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[2-[(1~{R},5~{S})-7-phenyl-3,7-diazabicyclo[3.3.1]nonan-3-yl]-1,3-thiazol-4-yl]methyl]-3,4-dihydro-1~{H}-isoquinoline-7-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JK6 "Create component" 2025-07-21 PDBE A1JK6 "Initial release" 2025-12-24 RCSB #