data_A1JKP # _chem_comp.id A1JKP _chem_comp.name "Ruthenium[II]-cymene-phosphaadamantane" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H23 N3 P Ru" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-07-16 _chem_comp.pdbx_modified_date 2026-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 389.418 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JKP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RXU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JKP C10 C1 C 0 1 N N N N N N -30.751 -49.313 38.093 -30.751 -49.313 38.093 C10 A1JKP 1 A1JKP C16 C2 C 0 1 N N N N N N -30.411 -47.090 34.343 -30.411 -47.090 34.343 C16 A1JKP 2 A1JKP C17 C3 C 0 1 N N N N N N -31.262 -48.817 32.828 -31.262 -48.817 32.828 C17 A1JKP 3 A1JKP C18 C4 C 0 1 N N N N N N -32.301 -49.220 35.007 -32.301 -49.220 35.007 C18 A1JKP 4 A1JKP C20 C5 C 0 1 N N N N N N -33.209 -46.512 34.802 -33.209 -46.512 34.802 C20 A1JKP 5 A1JKP C2 C6 C 0 1 N N N N N N -29.624 -48.486 37.720 -29.624 -48.486 37.720 C2 A1JKP 6 A1JKP C3 C7 C 0 1 N N N N N N -29.342 -47.279 38.463 -29.342 -47.279 38.463 C3 A1JKP 7 A1JKP C4 C8 C 0 1 N N N N N N -30.178 -46.898 39.568 -30.178 -46.898 39.568 C4 A1JKP 8 A1JKP C5 C9 C 0 1 N N N N N N -31.312 -47.719 39.936 -31.312 -47.719 39.936 C5 A1JKP 9 A1JKP C6 C10 C 0 1 N N N N N N -32.171 -47.293 41.099 -32.171 -47.293 41.099 C6 A1JKP 10 A1JKP C7 C11 C 0 1 N N N N N N -31.301 -47.182 42.364 -31.301 -47.182 42.364 C7 A1JKP 11 A1JKP C8 C12 C 0 1 N N N N N N -33.411 -48.177 41.333 -33.411 -48.177 41.333 C8 A1JKP 12 A1JKP C9 C13 C 0 1 N N N N N N -31.590 -48.929 39.193 -31.590 -48.929 39.193 C9 A1JKP 13 A1JKP RU RU1 RU 0 0 N N N N N N -31.481 -47.264 37.756 -31.481 -47.264 37.756 RU A1JKP 14 A1JKP C1 C14 C 0 1 N N N N N N -28.732 -48.887 36.582 -28.732 -48.887 36.582 C1 A1JKP 15 A1JKP P1 P1 P 0 1 N N N N N N -31.814 -47.505 35.468 -31.814 -47.505 35.468 P1 A1JKP 16 A1JKP N3 N1 N 0 1 N N N N N N -32.508 -49.196 33.544 -32.508 -49.196 33.544 N3 A1JKP 17 A1JKP C21 C15 C 0 1 N N N N N N -33.635 -48.302 33.191 -33.635 -48.302 33.191 C21 A1JKP 18 A1JKP N2 N2 N 0 1 N N N N N N -33.298 -46.871 33.369 -33.298 -46.871 33.369 N2 A1JKP 19 A1JKP C19 C16 C 0 1 N N N N N N -32.051 -46.523 32.640 -32.051 -46.523 32.640 C19 A1JKP 20 A1JKP N1 N3 N 0 1 N N N N N N -30.900 -47.388 32.980 -30.900 -47.388 32.980 N1 A1JKP 21 A1JKP H16A H1 H 0 0 N N N N N N -30.147 -46.026 34.433 -30.147 -46.026 34.433 H16A A1JKP 22 A1JKP H16B H2 H 0 0 N N N N N N -29.532 -47.707 34.580 -29.532 -47.707 34.580 H16B A1JKP 23 A1JKP H17A H3 H 0 0 N N N N N N -31.398 -49.029 31.757 -31.398 -49.029 31.757 H17A A1JKP 24 A1JKP H17B H4 H 0 0 N N N N N N -30.436 -49.428 33.220 -30.436 -49.428 33.221 H17B A1JKP 25 A1JKP H18A H5 H 0 0 N N N N N N -31.503 -49.929 35.270 -31.503 -49.930 35.270 H18A A1JKP 26 A1JKP H18B H6 H 0 0 N N N N N N -33.230 -49.506 35.521 -33.230 -49.507 35.521 H18B A1JKP 27 A1JKP H20A H7 H 0 0 N N N N N N -34.145 -46.766 35.321 -34.145 -46.766 35.321 H20A A1JKP 28 A1JKP H20B H8 H 0 0 N N N N N N -33.006 -45.437 34.918 -33.006 -45.437 34.918 H20B A1JKP 29 A1JKP H6 H9 H 0 1 N N N N N N -32.540 -46.281 40.877 -32.540 -46.281 40.877 H6 A1JKP 30 A1JKP H71 H10 H 0 1 N N N N N N -31.927 -46.871 43.214 -31.927 -46.871 43.214 H71 A1JKP 31 A1JKP H72 H11 H 0 1 N N N N N N -30.845 -48.159 42.582 -30.845 -48.159 42.582 H72 A1JKP 32 A1JKP H73 H12 H 0 1 N N N N N N -30.509 -46.437 42.200 -30.509 -46.437 42.200 H73 A1JKP 33 A1JKP H81 H13 H 0 1 N N N N N N -33.976 -47.795 42.196 -33.976 -47.795 42.196 H81 A1JKP 34 A1JKP H82 H14 H 0 1 N N N N N N -34.050 -48.156 40.438 -34.050 -48.156 40.438 H82 A1JKP 35 A1JKP H83 H15 H 0 1 N N N N N N -33.092 -49.211 41.532 -33.092 -49.211 41.532 H83 A1JKP 36 A1JKP H1 H16 H 0 1 N N N N N N -32.626 -49.298 39.196 -32.626 -49.298 39.196 H1 A1JKP 37 A1JKP H11 H17 H 0 1 N N N N N N -29.100 -49.824 36.140 -29.100 -49.825 36.140 H11 A1JKP 38 A1JKP H12 H18 H 0 1 N N N N N N -28.734 -48.096 35.818 -28.734 -48.096 35.818 H12 A1JKP 39 A1JKP H13 H19 H 0 1 N N N N N N -27.707 -49.035 36.954 -27.707 -49.035 36.954 H13 A1JKP 40 A1JKP H21A H21 H 0 0 N N N N N N -34.494 -48.545 33.834 -34.494 -48.545 33.834 H21A A1JKP 41 A1JKP H21B H22 H 0 0 N N N N N N -33.905 -48.473 32.138 -33.905 -48.473 32.139 H21B A1JKP 42 A1JKP H19A H24 H 0 0 N N N N N N -31.787 -45.483 32.882 -31.787 -45.483 32.882 H19A A1JKP 43 A1JKP H19B H25 H 0 0 N N N N N N -32.244 -46.611 31.561 -32.244 -46.611 31.561 H19B A1JKP 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JKP P1 C16 SING N N 1 A1JKP C18 P1 SING N N 2 A1JKP C20 P1 SING N N 3 A1JKP P1 RU SING N N 4 A1JKP C1 C2 SING N N 5 A1JKP C16 N1 SING N N 6 A1JKP N1 C17 SING N N 7 A1JKP N1 C19 SING N N 8 A1JKP C2 C3 SING N N 9 A1JKP C2 C10 DOUB N N 10 A1JKP C2 RU SING N N 11 A1JKP C19 N2 SING N N 12 A1JKP N2 C20 SING N N 13 A1JKP N2 C21 SING N N 14 A1JKP C3 C4 DOUB N N 15 A1JKP C3 RU SING N N 16 A1JKP C17 N3 SING N N 17 A1JKP N3 C18 SING N N 18 A1JKP C21 N3 SING N N 19 A1JKP C4 C5 SING N N 20 A1JKP C4 RU SING N N 21 A1JKP C6 C5 SING N N 22 A1JKP C5 C9 SING N N 23 A1JKP C5 RU SING N N 24 A1JKP C7 C6 SING N N 25 A1JKP C8 C6 SING N N 26 A1JKP C9 C10 SING N N 27 A1JKP C9 RU SING N N 28 A1JKP C10 RU SING N N 29 A1JKP C16 H16A SING N N 30 A1JKP C16 H16B SING N N 31 A1JKP C17 H17A SING N N 32 A1JKP C17 H17B SING N N 33 A1JKP C18 H18A SING N N 34 A1JKP C18 H18B SING N N 35 A1JKP C20 H20A SING N N 36 A1JKP C20 H20B SING N N 37 A1JKP C6 H6 SING N N 38 A1JKP C7 H71 SING N N 39 A1JKP C7 H72 SING N N 40 A1JKP C7 H73 SING N N 41 A1JKP C8 H81 SING N N 42 A1JKP C8 H82 SING N N 43 A1JKP C8 H83 SING N N 44 A1JKP C9 H1 SING N N 45 A1JKP C1 H11 SING N N 46 A1JKP C1 H12 SING N N 47 A1JKP C1 H13 SING N N 48 A1JKP C21 H21A SING N N 49 A1JKP C21 H21B SING N N 50 A1JKP C19 H19A SING N N 51 A1JKP C19 H19B SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JKP InChI InChI 1.06 "InChI=1S/C10H11.C6H12N3P.Ru/c1-8(2)10-6-4-9(3)5-7-10;1-7-2-9-3-8(1)5-10(4-7)6-9;/h6,8H,1-3H3;1-6H2;/q;;-1/p+1" A1JKP InChIKey InChI 1.06 NBBMWLSURICRKU-UHFFFAOYSA-O A1JKP SMILES_CANONICAL CACTVS 3.385 "[Ru].CC(C)C1CC=C(C)C=C1.C2N3CN4CN2CP(C3)C4" A1JKP SMILES CACTVS 3.385 "[Ru].CC(C)C1CC=C(C)C=C1.C2N3CN4CN2CP(C3)C4" A1JKP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C12C3[Ru]1456(C3=C4(C5=C62)C)[P]78CN9CN(C7)CN(C9)C8" A1JKP SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C12C3[Ru]1456(C3=C4(C5=C62)C)[P]78CN9CN(C7)CN(C9)C8" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JKP "Create component" 2025-07-16 PDBE A1JKP "Initial release" 2026-07-22 RCSB #