data_A1JKR # _chem_comp.id A1JKR _chem_comp.name "2-[[4-[3-[3-[4-[(2-carboxyphenyl)amino]-2-chloranyl-phenoxy]propyl-(2-hydroxyethyl)amino]propoxy]-3-chloranyl-phenyl]amino]benzoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H35 Cl2 N3 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-07-16 _chem_comp.pdbx_modified_date 2026-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 668.564 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JKR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9RY5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JKR C13 C1 C 0 1 Y N N N N N -1.398 -21.756 -23.690 7.804 0.852 0.955 C13 A1JKR 1 A1JKR C15 C2 C 0 1 Y N N N N N 0.988 -21.957 -23.396 6.311 -0.941 0.375 C15 A1JKR 2 A1JKR C20 C3 C 0 1 N N N N N N 0.092 -22.003 -17.655 2.281 2.856 -0.469 C20 A1JKR 3 A1JKR C21 C4 C 0 1 N N N N N N -0.450 -20.597 -17.216 0.927 2.299 -0.911 C21 A1JKR 4 A1JKR C24 C5 C 0 1 N N N N N N 0.551 -18.459 -16.390 0.378 4.271 -2.204 C24 A1JKR 5 A1JKR C28 C6 C 0 1 N N N N N N -0.394 -21.987 -13.041 -3.326 1.789 -0.158 C28 A1JKR 6 A1JKR C01 C7 C 0 1 Y N N N N N 1.463 -23.928 -28.491 8.228 -4.530 -0.984 C01 A1JKR 7 A1JKR C02 C8 C 0 1 Y N N N N N 2.102 -25.026 -26.456 8.002 -5.031 1.350 C02 A1JKR 8 A1JKR C03 C9 C 0 1 Y N N N N N 2.166 -24.928 -27.845 8.020 -5.443 0.027 C03 A1JKR 9 A1JKR C04 C10 C 0 1 Y N N N N N 1.371 -24.057 -25.718 8.193 -3.703 1.672 C04 A1JKR 10 A1JKR C05 C11 C 0 1 Y N N N N N 0.766 -22.934 -27.773 8.422 -3.180 -0.675 C05 A1JKR 11 A1JKR C06 C12 C 0 1 Y N N N N N 0.701 -22.991 -26.365 8.404 -2.767 0.667 C06 A1JKR 12 A1JKR C07 C13 C 0 1 N N N N N N 0.024 -21.838 -28.555 8.646 -2.199 -1.750 C07 A1JKR 13 A1JKR O08 O1 O 0 1 N N N N N N 0.002 -21.833 -29.829 8.885 -1.040 -1.475 O08 A1JKR 14 A1JKR O09 O2 O 0 1 N N N N N N -0.559 -20.934 -27.959 8.585 -2.586 -3.040 O09 A1JKR 15 A1JKR N10 N1 N 0 1 N N N N N N -0.004 -21.869 -25.668 8.595 -1.429 0.988 N10 A1JKR 16 A1JKR C11 C14 C 0 1 Y N N N N N -0.128 -21.877 -24.239 7.568 -0.504 0.772 C11 A1JKR 17 A1JKR C12 C15 C 0 1 Y N N N N N -1.589 -21.704 -22.318 6.789 1.765 0.741 C12 A1JKR 18 A1JKR C14 C16 C 0 1 Y N N N N N -0.470 -21.801 -21.493 5.535 1.327 0.339 C14 A1JKR 19 A1JKR C16 C17 C 0 1 Y N N N N N 0.840 -21.905 -22.019 5.300 -0.027 0.151 C16 A1JKR 20 A1JKR CL17 CL1 CL 0 0 N N N N N N -3.241 -21.528 -21.646 7.082 3.460 0.977 CL17 A1JKR 21 A1JKR O18 O3 O 0 1 N N N N N N -0.731 -21.738 -20.094 4.536 2.226 0.129 O18 A1JKR 22 A1JKR C19 C18 C 0 1 N N N N N N 0.276 -22.292 -19.199 3.271 1.705 -0.284 C19 A1JKR 23 A1JKR N22 N2 N 0 1 N N N N N N 0.274 -19.867 -16.166 -0.024 3.405 -1.089 N22 A1JKR 24 A1JKR C23 C19 C 0 1 N N N N N N 0.450 -20.391 -14.818 -1.390 2.899 -1.281 C23 A1JKR 25 A1JKR C25 C20 C 0 1 N N N N N N 1.509 -17.766 -15.417 -0.474 5.542 -2.197 C25 A1JKR 26 A1JKR O26 O4 O 0 1 N N N N N N 2.671 -18.507 -15.457 -0.270 6.245 -0.970 O26 A1JKR 27 A1JKR C27 C21 C 0 1 N N N N N N 0.001 -21.833 -14.523 -1.951 2.424 0.061 C27 A1JKR 28 A1JKR O29 O5 O 0 1 N N N N N N 0.737 -21.770 -12.134 -3.850 1.345 1.095 O29 A1JKR 29 A1JKR C30 C22 C 0 1 Y N N N N N 0.442 -21.792 -10.732 -5.074 0.752 1.078 C30 A1JKR 30 A1JKR C31 C23 C 0 1 Y N N N N N 1.335 -21.829 -8.522 -6.889 -0.299 2.243 C31 A1JKR 31 A1JKR C32 C24 C 0 1 Y N N N N N 1.577 -21.770 -9.905 -5.645 0.303 2.261 C32 A1JKR 32 A1JKR C33 C25 C 0 1 Y N N N N N 0.031 -21.839 -7.962 -7.567 -0.454 1.041 C33 A1JKR 33 A1JKR C34 C26 C 0 1 Y N N N N N -0.869 -21.829 -10.201 -5.754 0.603 -0.122 C34 A1JKR 34 A1JKR C35 C27 C 0 1 Y N N N N N -1.048 -21.854 -8.817 -6.998 0.002 -0.141 C35 A1JKR 35 A1JKR CL36 CL2 CL 0 0 N N N N N N 3.269 -21.709 -10.563 -4.796 0.497 3.762 CL36 A1JKR 36 A1JKR N37 N3 N 0 1 N N N N N N 0.010 -21.872 -6.501 -8.824 -1.070 1.021 N37 A1JKR 37 A1JKR C38 C28 C 0 1 Y N N N N N -0.770 -22.931 -5.799 -9.448 -1.333 -0.191 C38 A1JKR 38 A1JKR C39 C29 C 0 1 Y N N N N N -1.723 -23.767 -3.721 -9.675 -2.677 -2.193 C39 A1JKR 39 A1JKR C40 C30 C 0 1 Y N N N N N -0.897 -22.859 -4.405 -9.037 -2.423 -0.975 C40 A1JKR 40 A1JKR C41 C31 C 0 1 Y N N N N N -2.450 -24.752 -4.390 -10.699 -1.859 -2.615 C41 A1JKR 41 A1JKR C42 C32 C 0 1 Y N N N N N -1.494 -23.950 -6.465 -10.488 -0.523 -0.632 C42 A1JKR 42 A1JKR C43 C33 C 0 1 Y N N N N N -2.310 -24.852 -5.766 -11.107 -0.787 -1.836 C43 A1JKR 43 A1JKR C44 C34 C 0 1 N N N N N N -0.042 -21.829 -3.637 -7.940 -3.293 -0.517 C44 A1JKR 44 A1JKR O45 O6 O 0 1 N N N N N N -0.009 -21.831 -2.350 -7.470 -4.266 -1.324 O45 A1JKR 45 A1JKR O46 O7 O 0 1 N N N N N N 0.638 -21.009 -4.235 -7.459 -3.135 0.587 O46 A1JKR 46 A1JKR H1 H1 H 0 1 N N N N N N -2.255 -21.701 -24.346 8.780 1.193 1.268 H1 A1JKR 47 A1JKR H2 H2 H 0 1 N N N N N N 1.974 -22.060 -23.824 6.128 -1.995 0.228 H2 A1JKR 48 A1JKR H3 H3 H 0 1 N N N N N N -0.607 -22.757 -17.265 2.658 3.541 -1.229 H3 A1JKR 49 A1JKR H4 H4 H 0 1 N N N N N N 1.076 -22.135 -17.180 2.164 3.390 0.475 H4 A1JKR 50 A1JKR H5 H5 H 0 1 N N N N N N -0.458 -19.957 -18.111 1.044 1.766 -1.855 H5 A1JKR 51 A1JKR H6 H6 H 0 1 N N N N N N -1.481 -20.742 -16.860 0.550 1.614 -0.151 H6 A1JKR 52 A1JKR H7 H7 H 0 1 N N N N N N 0.979 -18.363 -17.399 1.430 4.538 -2.096 H7 A1JKR 53 A1JKR H8 H8 H 0 1 N N N N N N -0.409 -17.923 -16.346 0.233 3.742 -3.146 H8 A1JKR 54 A1JKR H9 H9 H 0 1 N N N N N N -1.180 -21.254 -12.807 -4.001 2.525 -0.594 H9 A1JKR 55 A1JKR H10 H10 H 0 1 N N N N N N -0.783 -23.004 -12.883 -3.230 0.938 -0.833 H10 A1JKR 56 A1JKR H11 H11 H 0 1 N N N N N N 1.447 -23.907 -29.571 8.245 -4.857 -2.013 H11 A1JKR 57 A1JKR H12 H12 H 0 1 N N N N N N 2.605 -25.833 -25.944 7.838 -5.754 2.135 H12 A1JKR 58 A1JKR H13 H13 H 0 1 N N N N N N 2.761 -25.628 -28.413 7.870 -6.485 -0.214 H13 A1JKR 59 A1JKR H14 H14 H 0 1 N N N N N N 1.326 -24.135 -24.642 8.177 -3.391 2.706 H14 A1JKR 60 A1JKR H15 H15 H 0 1 N N N N N N -0.955 -20.343 -28.589 8.738 -1.906 -3.710 H15 A1JKR 61 A1JKR H16 H16 H 0 1 N N N N N N -0.389 -21.114 -26.199 9.441 -1.136 1.362 H16 A1JKR 62 A1JKR H17 H17 H 0 1 N N N N N N 1.699 -21.943 -21.366 4.323 -0.367 -0.159 H17 A1JKR 63 A1JKR H18 H18 H 0 1 N N N N N N 0.279 -23.383 -19.336 2.894 1.020 0.476 H18 A1JKR 64 A1JKR H19 H19 H 0 1 N N N N N N 1.251 -21.882 -19.501 3.388 1.171 -1.228 H19 A1JKR 65 A1JKR H21 H21 H 0 1 N N N N N N 1.523 -20.332 -14.585 -2.020 3.696 -1.676 H21 A1JKR 66 A1JKR H22 H22 H 0 1 N N N N N N -0.110 -19.732 -14.138 -1.373 2.066 -1.983 H22 A1JKR 67 A1JKR H23 H23 H 0 1 N N N N N N 1.701 -16.731 -15.737 -0.185 6.178 -3.033 H23 A1JKR 68 A1JKR H24 H24 H 0 1 N N N N N N 1.089 -17.763 -14.400 -1.526 5.274 -2.291 H24 A1JKR 69 A1JKR H25 H25 H 0 1 N N N N N N 3.311 -18.124 -14.869 -0.780 7.063 -0.895 H25 A1JKR 70 A1JKR H26 H26 H 0 1 N N N N N N -0.865 -22.078 -15.155 -2.047 3.274 0.736 H26 A1JKR 71 A1JKR H27 H27 H 0 1 N N N N N N 0.828 -22.522 -14.750 -1.276 1.688 0.497 H27 A1JKR 72 A1JKR H28 H28 H 0 1 N N N N N N 2.182 -21.869 -7.853 -7.331 -0.653 3.162 H28 A1JKR 73 A1JKR H29 H29 H 0 1 N N N N N N -1.724 -21.838 -10.861 -5.312 0.957 -1.041 H29 A1JKR 74 A1JKR H30 H30 H 0 1 N N N N N N -2.048 -21.886 -8.411 -7.527 -0.115 -1.075 H30 A1JKR 75 A1JKR H31 H31 H 0 1 N N N N N N 0.516 -21.188 -5.975 -9.259 -1.312 1.853 H31 A1JKR 76 A1JKR H32 H32 H 0 1 N N N N N N -1.797 -23.700 -2.646 -9.364 -3.513 -2.802 H32 A1JKR 77 A1JKR H33 H33 H 0 1 N N N N N N -3.105 -25.420 -3.850 -11.191 -2.056 -3.556 H33 A1JKR 78 A1JKR H34 H34 H 0 1 N N N N N N -1.416 -24.035 -7.539 -10.812 0.313 -0.031 H34 A1JKR 79 A1JKR H35 H35 H 0 1 N N N N N N -2.833 -25.630 -6.303 -11.914 -0.155 -2.174 H35 A1JKR 80 A1JKR H36 H36 H 0 1 N N N N N N 0.578 -21.149 -2.047 -6.750 -4.811 -0.980 H36 A1JKR 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JKR O08 C07 DOUB N N 1 A1JKR C07 O09 SING N N 2 A1JKR C07 C05 SING N N 3 A1JKR C01 C03 DOUB Y N 4 A1JKR C01 C05 SING Y N 5 A1JKR C03 C02 SING Y N 6 A1JKR C05 C06 DOUB Y N 7 A1JKR C02 C04 DOUB Y N 8 A1JKR C06 C04 SING Y N 9 A1JKR C06 N10 SING N N 10 A1JKR N10 C11 SING N N 11 A1JKR C11 C13 DOUB Y N 12 A1JKR C11 C15 SING Y N 13 A1JKR C13 C12 SING Y N 14 A1JKR C15 C16 DOUB Y N 15 A1JKR C12 CL17 SING N N 16 A1JKR C12 C14 DOUB Y N 17 A1JKR C16 C14 SING Y N 18 A1JKR C14 O18 SING N N 19 A1JKR O18 C19 SING N N 20 A1JKR C19 C20 SING N N 21 A1JKR C20 C21 SING N N 22 A1JKR C21 N22 SING N N 23 A1JKR C24 N22 SING N N 24 A1JKR C24 C25 SING N N 25 A1JKR N22 C23 SING N N 26 A1JKR O26 C25 SING N N 27 A1JKR C23 C27 SING N N 28 A1JKR C27 C28 SING N N 29 A1JKR C28 O29 SING N N 30 A1JKR O29 C30 SING N N 31 A1JKR C30 C34 DOUB Y N 32 A1JKR C30 C32 SING Y N 33 A1JKR CL36 C32 SING N N 34 A1JKR C34 C35 SING Y N 35 A1JKR C32 C31 DOUB Y N 36 A1JKR C35 C33 DOUB Y N 37 A1JKR C31 C33 SING Y N 38 A1JKR C33 N37 SING N N 39 A1JKR N37 C38 SING N N 40 A1JKR C42 C38 DOUB Y N 41 A1JKR C42 C43 SING Y N 42 A1JKR C38 C40 SING Y N 43 A1JKR C43 C41 DOUB Y N 44 A1JKR C40 C39 DOUB Y N 45 A1JKR C40 C44 SING N N 46 A1JKR C41 C39 SING Y N 47 A1JKR O46 C44 DOUB N N 48 A1JKR C44 O45 SING N N 49 A1JKR C13 H1 SING N N 50 A1JKR C15 H2 SING N N 51 A1JKR C20 H3 SING N N 52 A1JKR C20 H4 SING N N 53 A1JKR C21 H5 SING N N 54 A1JKR C21 H6 SING N N 55 A1JKR C24 H7 SING N N 56 A1JKR C24 H8 SING N N 57 A1JKR C28 H9 SING N N 58 A1JKR C28 H10 SING N N 59 A1JKR C01 H11 SING N N 60 A1JKR C02 H12 SING N N 61 A1JKR C03 H13 SING N N 62 A1JKR C04 H14 SING N N 63 A1JKR O09 H15 SING N N 64 A1JKR N10 H16 SING N N 65 A1JKR C16 H17 SING N N 66 A1JKR C19 H18 SING N N 67 A1JKR C19 H19 SING N N 68 A1JKR C23 H21 SING N N 69 A1JKR C23 H22 SING N N 70 A1JKR C25 H23 SING N N 71 A1JKR C25 H24 SING N N 72 A1JKR O26 H25 SING N N 73 A1JKR C27 H26 SING N N 74 A1JKR C27 H27 SING N N 75 A1JKR C31 H28 SING N N 76 A1JKR C34 H29 SING N N 77 A1JKR C35 H30 SING N N 78 A1JKR N37 H31 SING N N 79 A1JKR C39 H32 SING N N 80 A1JKR C41 H33 SING N N 81 A1JKR C42 H34 SING N N 82 A1JKR C43 H35 SING N N 83 A1JKR O45 H36 SING N N 84 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JKR InChI InChI 1.06 "InChI=1S/C34H35Cl2N3O7/c35-27-21-23(37-29-9-3-1-7-25(29)33(41)42)11-13-31(27)45-19-5-15-39(17-18-40)16-6-20-46-32-14-12-24(22-28(32)36)38-30-10-4-2-8-26(30)34(43)44/h1-4,7-14,21-22,37-38,40H,5-6,15-20H2,(H,41,42)(H,43,44)" A1JKR InChIKey InChI 1.06 LSCCJHCDMCYODT-UHFFFAOYSA-N A1JKR SMILES_CANONICAL CACTVS 3.385 "OCCN(CCCOc1ccc(Nc2ccccc2C(O)=O)cc1Cl)CCCOc3ccc(Nc4ccccc4C(O)=O)cc3Cl" A1JKR SMILES CACTVS 3.385 "OCCN(CCCOc1ccc(Nc2ccccc2C(O)=O)cc1Cl)CCCOc3ccc(Nc4ccccc4C(O)=O)cc3Cl" A1JKR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)C(=O)O)Nc2ccc(c(c2)Cl)OCCCN(CCCOc3ccc(cc3Cl)Nc4ccccc4C(=O)O)CCO" A1JKR SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)C(=O)O)Nc2ccc(c(c2)Cl)OCCCN(CCCOc3ccc(cc3Cl)Nc4ccccc4C(=O)O)CCO" # _pdbx_chem_comp_identifier.comp_id A1JKR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[4-[3-[3-[4-[(2-carboxyphenyl)amino]-2-chloranyl-phenoxy]propyl-(2-hydroxyethyl)amino]propoxy]-3-chloranyl-phenyl]amino]benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JKR "Create component" 2025-07-16 PDBE A1JKR "Initial release" 2026-07-22 RCSB #