data_A1JL2 # _chem_comp.id A1JL2 _chem_comp.name "(1~{R},2~{R})-2-azanyl-~{N}-[4-[(1~{R})-1-[propanoyl-[4-(trifluoromethyloxy)phenyl]amino]ethyl]phenyl]cyclopentane-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H28 F3 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-08-01 _chem_comp.pdbx_modified_date 2026-01-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 463.493 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JL2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9S6M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JL2 C1 C1 C 0 1 N N R N N N 40.940 -1.277 19.787 -1.032 2.118 1.589 C1 A1JL2 1 A1JL2 C2 C2 C 0 1 Y N N N N N 40.284 0.003 19.291 0.190 1.279 1.315 C2 A1JL2 2 A1JL2 C3 C3 C 0 1 Y N N N N N 41.037 1.092 18.867 0.644 0.389 2.271 C3 A1JL2 3 A1JL2 C7 C4 C 0 1 Y N N N N N 38.900 0.110 19.248 0.852 1.398 0.107 C7 A1JL2 4 A1JL2 C8 C5 C 0 1 N N N N N N 38.749 4.554 17.209 4.592 -0.526 -0.150 C8 A1JL2 5 A1JL2 C9 C6 C 0 1 N N R N N N 37.649 5.440 16.649 5.831 -1.351 -0.389 C9 A1JL2 6 A1JL2 C10 C7 C 0 1 N N N N N N 37.695 5.587 15.122 6.509 -1.713 0.955 C10 A1JL2 7 A1JL2 C11 C8 C 0 1 N N N N N N 36.902 6.863 14.866 7.976 -1.980 0.537 C11 A1JL2 8 A1JL2 C12 C9 C 0 1 N N N N N N 37.369 7.799 15.977 8.259 -0.923 -0.550 C12 A1JL2 9 A1JL2 C13 C10 C 0 1 N N R N N N 37.711 6.892 17.169 6.895 -0.523 -1.139 C13 A1JL2 10 A1JL2 C14 C11 C 0 1 Y N N N N N 40.598 -2.394 17.530 -2.655 1.114 0.001 C14 A1JL2 11 A1JL2 C15 C12 C 0 1 Y N N N N N 39.823 -3.554 17.493 -3.268 1.103 -1.245 C15 A1JL2 12 A1JL2 C16 C13 C 0 1 Y N N N N N 38.946 -3.771 16.440 -4.056 0.032 -1.617 C16 A1JL2 13 A1JL2 C19 C14 C 0 1 Y N N N N N 40.482 -1.467 16.500 -2.835 0.049 0.872 C19 A1JL2 14 A1JL2 C20 C15 C 0 1 N N N N N N 37.208 -3.873 14.062 -5.155 -3.148 -0.165 C20 A1JL2 15 A1JL2 C21 C16 C 0 1 N N N N N N 42.725 -2.603 18.748 -1.829 3.315 -0.378 C21 A1JL2 16 A1JL2 C22 C17 C 0 1 N N N N N N 43.241 -3.470 17.629 -2.983 3.626 -1.296 C22 A1JL2 17 A1JL2 O2 O1 O 0 1 N N N N N N 43.424 -2.385 19.730 -0.881 4.069 -0.318 O2 A1JL2 18 A1JL2 C23 C18 C 0 1 N N N N N N 44.338 -2.786 16.844 -3.243 5.134 -1.295 C23 A1JL2 19 A1JL2 N2 N1 N 0 1 N N N N N N 41.450 -2.117 18.660 -1.850 2.198 0.376 N2 A1JL2 20 A1JL2 C18 C19 C 0 1 Y N N N N N 39.607 -1.684 15.453 -3.624 -1.022 0.500 C18 A1JL2 21 A1JL2 C17 C20 C 0 1 Y N N N N N 38.839 -2.832 15.424 -4.236 -1.033 -0.745 C17 A1JL2 22 A1JL2 O1 O2 O 0 1 N N N N N N 37.963 -2.819 14.308 -5.013 -2.087 -1.111 O1 A1JL2 23 A1JL2 F2 F1 F 0 1 N N N N N N 36.344 -4.098 15.035 -5.981 -4.142 -0.700 F2 A1JL2 24 A1JL2 F1 F2 F 0 1 N N N N N N 37.936 -4.961 13.891 -3.897 -3.689 0.121 F1 A1JL2 25 A1JL2 F F3 F 0 1 N N N N N N 36.510 -3.681 12.962 -5.726 -2.650 1.012 F A1JL2 26 A1JL2 C C21 C 0 1 N N N N N N 40.031 -2.092 20.708 -0.602 3.525 2.008 C A1JL2 27 A1JL2 C6 C22 C 0 1 Y N N N N N 38.283 1.262 18.797 1.972 0.630 -0.147 C6 A1JL2 28 A1JL2 C5 C23 C 0 1 Y N N N N N 39.041 2.344 18.370 2.433 -0.261 0.813 C5 A1JL2 29 A1JL2 C4 C24 C 0 1 Y N N N N N 40.427 2.252 18.414 1.764 -0.381 2.024 C4 A1JL2 30 A1JL2 N N2 N 0 1 N N N N N N 38.302 3.404 17.778 3.568 -1.039 0.559 N A1JL2 31 A1JL2 O O3 O 0 1 N N N N N N 39.939 4.876 17.146 4.518 0.599 -0.596 O A1JL2 32 A1JL2 N1 N3 N 0 1 N N N N N N 36.779 7.114 18.320 6.855 -0.834 -2.574 N1 A1JL2 33 A1JL2 H H1 H 0 1 N N N N N N 41.811 -0.976 20.387 -1.614 1.662 2.390 H A1JL2 34 A1JL2 H6 H2 H 0 1 N N N N N N 42.115 1.034 18.891 0.122 0.296 3.212 H6 A1JL2 35 A1JL2 H9 H3 H 0 1 N N N N N N 38.294 -0.723 19.573 0.492 2.091 -0.639 H9 A1JL2 36 A1JL2 H1 H4 H 0 1 N N N N N N 36.675 5.012 16.929 5.585 -2.254 -0.947 H1 A1JL2 37 A1JL2 H11 H5 H 0 1 N N N N N N 38.731 5.690 14.767 6.453 -0.877 1.653 H11 A1JL2 38 A1JL2 H12 H6 H 0 1 N N N N N N 37.223 4.724 14.629 6.061 -2.608 1.386 H12 A1JL2 39 A1JL2 H13 H7 H 0 1 N N N N N N 37.137 7.280 13.876 8.646 -1.843 1.386 H13 A1JL2 40 A1JL2 H14 H8 H 0 1 N N N N N N 35.821 6.675 14.938 8.079 -2.985 0.127 H14 A1JL2 41 A1JL2 H15 H9 H 0 1 N N N N N N 38.258 8.362 15.656 8.744 -0.053 -0.108 H15 A1JL2 42 A1JL2 H16 H10 H 0 1 N N N N N N 36.568 8.502 16.248 8.892 -1.348 -1.329 H16 A1JL2 43 A1JL2 H2 H11 H 0 1 N N N N N N 38.741 7.106 17.491 6.718 0.542 -0.983 H2 A1JL2 44 A1JL2 H19 H12 H 0 1 N N N N N N 39.906 -4.284 18.285 -3.128 1.932 -1.923 H19 A1JL2 45 A1JL2 H20 H13 H 0 1 N N N N N N 38.347 -4.670 16.411 -4.533 0.023 -2.586 H20 A1JL2 46 A1JL2 H22 H14 H 0 1 N N N N N N 41.082 -0.569 16.519 -2.359 0.057 1.842 H22 A1JL2 47 A1JL2 H23 H15 H 0 1 N N N N N N 43.638 -4.403 18.056 -2.741 3.299 -2.308 H23 A1JL2 48 A1JL2 H24 H16 H 0 1 N N N N N N 42.409 -3.704 16.948 -3.875 3.103 -0.949 H24 A1JL2 49 A1JL2 H25 H17 H 0 1 N N N N N N 44.684 -3.452 16.040 -4.078 5.359 -1.959 H25 A1JL2 50 A1JL2 H26 H18 H 0 1 N N N N N N 43.949 -1.855 16.406 -3.485 5.460 -0.284 H26 A1JL2 51 A1JL2 H27 H19 H 0 1 N N N N N N 45.178 -2.553 17.515 -2.352 5.656 -1.642 H27 A1JL2 52 A1JL2 H21 H20 H 0 1 N N N N N N 39.524 -0.957 14.658 -3.764 -1.851 1.177 H21 A1JL2 53 A1JL2 H3 H21 H 0 1 N N N N N N 40.558 -3.001 21.033 -1.325 4.251 1.638 H3 A1JL2 54 A1JL2 H4 H22 H 0 1 N N N N N N 39.765 -1.488 21.588 -0.554 3.581 3.095 H4 A1JL2 55 A1JL2 H5 H23 H 0 1 N N N N N N 39.116 -2.372 20.166 0.380 3.744 1.589 H5 A1JL2 56 A1JL2 H8 H24 H 0 1 N N N N N N 37.205 1.321 18.777 2.488 0.723 -1.091 H8 A1JL2 57 A1JL2 H7 H25 H 0 1 N N N N N N 41.032 3.088 18.094 2.118 -1.076 2.771 H7 A1JL2 58 A1JL2 H10 H26 H 0 1 N N N N N N 37.309 3.286 17.781 3.616 -1.949 0.893 H10 A1JL2 59 A1JL2 H17 H27 H 0 1 N N N N N N 37.031 6.509 19.075 7.561 -0.316 -3.076 H17 A1JL2 60 A1JL2 H18 H28 H 0 1 N N N N N N 36.842 8.066 18.621 6.953 -1.826 -2.732 H18 A1JL2 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JL2 C C1 SING N N 1 A1JL2 C1 C2 SING N N 2 A1JL2 C2 C3 DOUB Y N 3 A1JL2 C3 C4 SING Y N 4 A1JL2 C4 C5 DOUB Y N 5 A1JL2 C5 C6 SING Y N 6 A1JL2 C6 C7 DOUB Y N 7 A1JL2 C5 N SING N N 8 A1JL2 N C8 SING N N 9 A1JL2 C8 O DOUB N N 10 A1JL2 C8 C9 SING N N 11 A1JL2 C9 C10 SING N N 12 A1JL2 C10 C11 SING N N 13 A1JL2 C11 C12 SING N N 14 A1JL2 C12 C13 SING N N 15 A1JL2 C13 N1 SING N N 16 A1JL2 C1 N2 SING N N 17 A1JL2 N2 C14 SING N N 18 A1JL2 C14 C15 DOUB Y N 19 A1JL2 C15 C16 SING Y N 20 A1JL2 C16 C17 DOUB Y N 21 A1JL2 C17 C18 SING Y N 22 A1JL2 C18 C19 DOUB Y N 23 A1JL2 C17 O1 SING N N 24 A1JL2 O1 C20 SING N N 25 A1JL2 C20 F SING N N 26 A1JL2 C20 F1 SING N N 27 A1JL2 C20 F2 SING N N 28 A1JL2 N2 C21 SING N N 29 A1JL2 C21 O2 DOUB N N 30 A1JL2 C21 C22 SING N N 31 A1JL2 C22 C23 SING N N 32 A1JL2 C7 C2 SING Y N 33 A1JL2 C13 C9 SING N N 34 A1JL2 C19 C14 SING Y N 35 A1JL2 C1 H SING N N 36 A1JL2 C3 H6 SING N N 37 A1JL2 C7 H9 SING N N 38 A1JL2 C9 H1 SING N N 39 A1JL2 C10 H11 SING N N 40 A1JL2 C10 H12 SING N N 41 A1JL2 C11 H13 SING N N 42 A1JL2 C11 H14 SING N N 43 A1JL2 C12 H15 SING N N 44 A1JL2 C12 H16 SING N N 45 A1JL2 C13 H2 SING N N 46 A1JL2 C15 H19 SING N N 47 A1JL2 C16 H20 SING N N 48 A1JL2 C19 H22 SING N N 49 A1JL2 C22 H23 SING N N 50 A1JL2 C22 H24 SING N N 51 A1JL2 C23 H25 SING N N 52 A1JL2 C23 H26 SING N N 53 A1JL2 C23 H27 SING N N 54 A1JL2 C18 H21 SING N N 55 A1JL2 C H3 SING N N 56 A1JL2 C H4 SING N N 57 A1JL2 C H5 SING N N 58 A1JL2 C6 H8 SING N N 59 A1JL2 C4 H7 SING N N 60 A1JL2 N H10 SING N N 61 A1JL2 N1 H17 SING N N 62 A1JL2 N1 H18 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JL2 InChI InChI 1.06 "InChI=1S/C24H28F3N3O3/c1-3-22(31)30(18-11-13-19(14-12-18)33-24(25,26)27)15(2)16-7-9-17(10-8-16)29-23(32)20-5-4-6-21(20)28/h7-15,20-21H,3-6,28H2,1-2H3,(H,29,32)/t15-,20-,21-/m1/s1" A1JL2 InChIKey InChI 1.06 HEJXNOPCFGXXDM-IPHXSNPTSA-N A1JL2 SMILES_CANONICAL CACTVS 3.385 "CCC(=O)N([C@H](C)c1ccc(NC(=O)[C@@H]2CCC[C@H]2N)cc1)c3ccc(OC(F)(F)F)cc3" A1JL2 SMILES CACTVS 3.385 "CCC(=O)N([CH](C)c1ccc(NC(=O)[CH]2CCC[CH]2N)cc1)c3ccc(OC(F)(F)F)cc3" A1JL2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(c1ccc(cc1)OC(F)(F)F)[C@H](C)c2ccc(cc2)NC(=O)[C@@H]3CCC[C@H]3N" A1JL2 SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(c1ccc(cc1)OC(F)(F)F)C(C)c2ccc(cc2)NC(=O)C3CCCC3N" # _pdbx_chem_comp_identifier.comp_id A1JL2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{R},2~{R})-2-azanyl-~{N}-[4-[(1~{R})-1-[propanoyl-[4-(trifluoromethyloxy)phenyl]amino]ethyl]phenyl]cyclopentane-1-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JL2 "Create component" 2025-08-01 PDBE A1JL2 "Initial release" 2026-01-14 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1JL2 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C23 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #